RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 OGDHQ02218 1023 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 VEPH1Q14D04 833 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 TAF5Q15542 800 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 CDO1Q16878 200 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 SEL1L2Q5TEA6 688 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 SDHAF4Q5VUM1 108 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 PLPP4Q5VZY2 271 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 DENND5BQ6ZUT9 1274 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 SCML4Q8N228 414 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 ARHGAP18Q8N392 663 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 MICAL1Q8TDZ2 1067 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 SPATA17Q96L03 361 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 RXFP1Q9HBX9 757 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 NGRNQ9NPE2 291 aaKnown RBP17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 HSFX1Q9UBD0 423 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 MAFFQ9ULX9 164 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 LAMA3Q16787 3333 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 ATF2P15336 505 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 CETN2P41208 172 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 MATKP42679 507 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 GPR15P49685 360 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 SULT1E1P49888 294 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 RWDD2BP57060 319 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 ATP11AP98196 1134 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 AMPD2Q01433 879 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 ZNF252P-AS1Q0IIN9 211 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 DCAF6Q58WW2 860 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 FAM109BQ6ICB4 259 aaPredicted RBP17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 DEFB106AQ8N104 65 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 TTC9BQ8N6N2 239 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 MNS1Q8NEH6 495 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 SCAMP5Q8TAC9 235 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 POF1BQ8WVV4 589 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 NDRG1Q92597 394 aaKnown RBP17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 LRCH3Q96II8 777 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 CEP295NLQ96MC4 621 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 CFAP57Q96MR6 1250 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 GDF15Q99988 308 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 COMMD8Q9NX08 183 aa17.92■□□□□ 0.46
CCDC28B-202ENST00000421922 C5orf67F2Z3F1 127 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 CES2O00748 559 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 TEX28O15482 410 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 PRPSAP2O60256 369 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 CEP104O60308 925 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 SRGAP2O75044 1071 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 SOAT2O75908 522 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 ABLIM3O94929 683 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 KRT7P08729 469 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 YWHAQP27348 245 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 NOS2P35228 1153 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 PTPN9P43378 593 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 PLD1Q13393 1074 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 BTBD8Q5XKL5 378 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 PM20D1Q6GTS8 502 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 CEP112Q8N8E3 955 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 FAM172AQ8WUF8 416 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 FBXO32Q969P5 355 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 CARD9Q9H257 536 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 RRN3Q9NYV6 651 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 PCDHA3Q9Y5H8 950 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 USP3Q9Y6I4 520 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 PLXNA3P51805 1871 aa17.91■□□□□ 0.46
CCDC28B-202ENST00000421922 A0A1W2PPC1 479 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 YJEFN3A6XGL0 299 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 E7ENQ6 273 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 TNFRSF10BO14763 440 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 DDX3YO15523 660 aaKnown RBP17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 VNN2O95498 520 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 CNPP09543 421 aaKnown RBP17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 NCAM1P13591 858 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 KLRC2P26717 231 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 YWHAGP61981 247 aaKnown RBP eCLIP17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 CLUL1Q15846 466 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 C15orf59Q2T9L4 293 aaPredicted RBP17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 CCDC14Q49A88 953 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 DAB2IPQ5VWQ8 1189 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 CPNE8Q86YQ8 564 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 SPPL3Q8TCT6 385 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 GPR152Q8TDT2 470 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 GIPC2Q8TF65 315 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 CD101Q93033 1021 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 SLITRK1Q96PX8 696 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 SLC2A13Q96QE2 648 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 DDX23Q9BUQ8 820 aaKnown RBP17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 CRISPLD1Q9H336 500 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 DDX56Q9NY93 547 aaKnown RBP17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 RNF14Q9UBS8 474 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 MAGED2Q9UNF1 606 aaPredicted RBP17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 SCML2Q9UQR0 700 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 YIPF1Q9Y548 306 aa17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 ZNF638Q14966 1978 aaKnown RBP17.9■□□□□ 0.46
CCDC28B-202ENST00000421922 SLC38A8A6NNN8 435 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 LILRB3O75022 631 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 LRCH4O75427 683 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 KRT1P04264 644 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 CSH1P0DML2 217 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 CSH2P0DML3 217 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 PCK1P35558 622 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 EPHB3P54753 998 aa17.89■□□□□ 0.46
CCDC28B-202ENST00000421922 ERVK-21P61565 698 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms