RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 ACVR2AP27037 513 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 ATP6V1E1P36543 226 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 NSUN2Q08J23 767 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13A-207ENST00000419472 MPP3Q13368 585 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 MAMLD1Q13495 774 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 ZNF484Q5JVG2 852 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 ATPAF1Q5TC12 328 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-207ENST00000419472 IL27RAQ6UWB1 636 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 LINS1Q8NG48 757 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 ZNF480Q8WV37 535 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 CUL5Q93034 780 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 LENG1Q96BZ8 264 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-207ENST00000419472 MCRS1Q96EZ8 462 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 CYFIP2Q96F07 1278 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 TSPAN18Q96SJ8 248 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 RBM15Q96T37 977 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13A-207ENST00000419472 GPR20Q99678 358 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 PHF7Q9BWX1 381 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-207ENST00000419472 PANK3Q9H999 370 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 SLC23A1Q9UHI7 598 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 ZDHHC8Q9ULC8 765 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 ATP11BQ9Y2G3 1177 aa5.55□□□□□ -1.52
VPS13A-207ENST00000419472 USP15Q9Y4E8 981 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-207ENST00000419472 KIF28PB7ZC32 967 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 VILLO15195 856 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 NTSR2O95665 410 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 IL18BPO95998 194 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 ATP6V1B1P15313 513 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 SDHBP21912 280 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 PTPN7P35236 360 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 GLRBP48167 497 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 RBM5P52756 815 aaKnown RBP eCLIP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 POLE2P56282 527 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 RPS3AP61247 264 aaKnown RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 NFATC3Q12968 1075 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 CHAF1BQ13112 559 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 BAK1Q16611 211 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 TRIM71Q2Q1W2 868 aaKnown RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 OR8H1Q8NGG4 311 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 METTL6Q8TCB7 284 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 SMCR8Q8TEV9 937 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 NCSTNQ92542 709 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 ATP2A3Q93084 1043 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 PERPQ96FX8 193 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 ZNF764Q96H86 408 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 TESK2Q96S53 571 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 BTBD2Q9BX70 525 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 TMEM140Q9NV12 185 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 MTRRQ9UBK8 725 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 CORO1CQ9ULV4 474 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 TMEM5Q9Y2B1 443 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 RALGAPBQ86X10 1494 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 TRPM1Q7Z4N2 1603 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 TULP2O00295 520 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 PROCP04070 461 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 F13BP05160 661 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 UBL4AP11441 157 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 LAMP2P13473 410 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 ARL3P36405 182 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 CD96P40200 585 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 MLLT6P55198 1093 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 MEF2AQ02078 507 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 STK4Q13043 487 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 SKIDA1Q1XH10 827 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 MMEL1Q495T6 779 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 FAXCQ5TGI0 409 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 RAB11FIP2Q7L804 512 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 RASGRP3Q8IV61 690 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 ADSSL1Q8N142 457 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 KCNN1Q92952 543 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 C11orf54Q9H0W9 315 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 SPATA6Q9NWH7 488 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 SIDT1Q9NXL6 827 aaKnown RBP5.54□□□□□ -1.52
VPS13A-207ENST00000419472 CDC42EP3Q9UKI2 254 aa5.54□□□□□ -1.52
VPS13A-207ENST00000419472 CCDC78A2IDD5 438 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 FAM90A20PA6NIJ5 464 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 ZNF785A8K8V0 405 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 M0QYG6 137 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 VSIG8P0DPA2 414 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 SERPINA4P29622 427 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 PTDSS1P48651 473 aaKnown RBP5.53□□□□□ -1.52
VPS13A-207ENST00000419472 CPT1AP50416 773 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 ANKRD1Q15327 319 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 MED22Q15528 200 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 NFIL3Q16649 462 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 DUSP28Q4G0W2 176 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 PRAMEF14Q5SWL7 426 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 GPR149Q86SP6 731 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 PLXDC1Q8IUK5 500 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 NETO2Q8NC67 525 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 GRAMD1AQ96CP6 724 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 SPATA17Q96L03 361 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 PPP1R9BQ96SB3 815 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 MECRQ9BV79 373 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 ING3Q9NXR8 418 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 STK26Q9P289 416 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 TOPAZ1Q8N9V7 1692 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 MARF1Q9Y4F3 1742 aaKnown RBP5.53□□□□□ -1.52
VPS13A-207ENST00000419472 TULP4Q9NRJ4 1543 aa5.53□□□□□ -1.52
VPS13A-207ENST00000419472 TCRBV7S2A1N4TA0A589 114 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms