RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CKMP06732 381 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 AIF1P55008 147 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 OTUD4Q01804 1114 aaKnown RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 PTRHD1Q6GMV3 140 aaKnown RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 FAM117BQ6P1L5 589 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ZNF467Q7Z7K2 595 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 METTL3Q86U44 580 aaKnown RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 TMEM199Q8N511 208 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 RIN2Q8WYP3 895 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SHC3Q92529 594 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 PDGFCQ9NRA1 345 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 IRAK4Q9NWZ3 460 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 HACD3Q9P035 362 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 STOML1Q9UBI4 398 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 NR2E3Q9Y5X4 410 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 STK25O00506 426 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 FGF10O15520 208 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 RNASEH1O60930 286 aaKnown RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SPAG7O75391 227 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SOAT2O75908 522 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 NOS2P35228 1153 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 AVPR1AP37288 418 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 HIBCHQ6NVY1 386 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 TOP6BLQ8N6T0 577 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SLC20A1Q8WUM9 679 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ZNF669Q96BR6 464 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 LRRC39Q96DD0 335 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 TEX12Q9BXU0 123 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ASPSCR1Q9BZE9 553 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 RNF208Q9H0X6 261 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 RIC8BQ9NVN3 520 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 PCDHGC5Q9Y5F6 944 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 NWD2Q9ULI1 1742 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SLC12A8A0AV02 714 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 RHOCP08134 193 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 HMOX2P30519 316 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 AKT1P31749 480 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 CLK2P49760 499 aaKnown RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ESRRGP62508 458 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 CDK16Q00536 496 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 GRIK3Q13003 919 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 AGAP9Q5VTM2 703 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 CAVIN3Q969G5 261 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ELMO2Q96JJ3 720 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ADAM2Q99965 735 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 SPATA16Q9BXB7 569 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 CDT1Q9H211 546 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 TSPYL2Q9H2G4 693 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 WDR70Q9NW82 654 aa12.39□□□□□ -0.43
PTPRF-205ENST00000414879 THG1LQ9NWX6 298 aaKnown RBP12.39□□□□□ -0.43
PTPRF-205ENST00000414879 ARFGEF2Q9Y6D5 1785 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 SF3B1O75533 1304 aaKnown RBP eCLIP12.38□□□□□ -0.43
PTPRF-205ENST00000414879 ZNF541Q9H0D2 1346 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 SIGLEC16A6NMB1 481 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 DIAPH2O60879 1101 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 TRPA1O75762 1119 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 ESRRBO95718 433 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 ASS1P00966 412 aaKnown RBP12.38□□□□□ -0.43
PTPRF-205ENST00000414879 CARSP49589 748 aaKnown RBP12.38□□□□□ -0.43
PTPRF-205ENST00000414879 TBX4P57082 545 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 ITGA9Q13797 1035 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 DNAL1Q4LDG9 190 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 ANKS3Q6ZW76 656 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 TMC7Q7Z402 723 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 ARHGEF19Q8IW93 802 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 SENP8Q96LD8 212 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 LACRTQ9GZZ8 138 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 KCTD10Q9H3F6 313 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 ZCCHC17Q9NP64 241 aaKnown RBP12.38□□□□□ -0.43
PTPRF-205ENST00000414879 RAD54BQ9Y620 910 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 DUSP11O75319 330 aaKnown RBP12.38□□□□□ -0.43
PTPRF-205ENST00000414879 ANP32DO95626 131 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 NPY2RP49146 381 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 KYNUQ16719 465 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 USP33Q8TEY7 942 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 MBOAT7Q96N66 472 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 GPR20Q99678 358 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 DDX3XO00571 662 aaKnown RBP eCLIP12.38□□□□□ -0.43
PTPRF-205ENST00000414879 DCLRE1AQ6PJP8 1040 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.38□□□□□ -0.43
PTPRF-205ENST00000414879 PHF13Q86YI8 300 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-205ENST00000414879 CMTM5Q96DZ9 223 aa12.38□□□□□ -0.43
PTPRF-205ENST00000414879 SLC9A3R1O14745 358 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-205ENST00000414879 B4GALT4O60513 344 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 GLI1P08151 1106 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 PRKAA2P54646 552 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 SKIV2LQ15477 1246 aaKnown RBP12.37□□□□□ -0.43
PTPRF-205ENST00000414879 DDX42Q86XP3 938 aaKnown RBP eCLIP12.37□□□□□ -0.43
PTPRF-205ENST00000414879 SLAIN1Q8ND83 568 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 N4BP2L2Q92802 583 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-205ENST00000414879 XPO6Q96QU8 1125 aaKnown RBP12.37□□□□□ -0.43
PTPRF-205ENST00000414879 SYTL2Q9HCH5 934 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 UTP6Q9NYH9 597 aaKnown RBP12.37□□□□□ -0.43
PTPRF-205ENST00000414879 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-205ENST00000414879 CASTOR2A6NHX0 329 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 IRF1P10914 325 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 SERPINB8P50452 374 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 ITGB3BPQ13352 177 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-205ENST00000414879 CATSPER1Q8NEC5 780 aa12.37□□□□□ -0.43
PTPRF-205ENST00000414879 TRAPPC12Q8WVT3 735 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms