RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 HDAC7Q8WUI4 952 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 SMARCD1Q96GM5 515 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 KCNK16Q96T55 309 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 SEPT5Q99719 369 aaPredicted RBP14.11□□□□□ -0.15
LIMS1-204ENST00000409441 PLEKHA4Q9H4M7 779 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 OSGEPQ9NPF4 335 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 KRT82Q9NSB4 513 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 TAS2R14Q9NYV8 317 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 FBXW11Q9UKB1 542 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 PCDHGC3Q9UN70 934 aa14.11□□□□□ -0.15
LIMS1-204ENST00000409441 MIF4GDA9UHW6 222 aaKnown RBP14.1□□□□□ -0.15
LIMS1-204ENST00000409441 SOAT2O75908 522 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 BEST1O76090 585 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 HEXIM1O94992 359 aaKnown RBP14.1□□□□□ -0.15
LIMS1-204ENST00000409441 MYBL2P10244 700 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 MAP3K7CLP57077 242 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 PPP2R5EQ16537 467 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 DDR2Q16832 855 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 PKDCCQ504Y2 493 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 DENND1BQ6P3S1 775 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 CCDC149Q6ZUS6 474 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 TTC30AQ86WT1 665 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 SCN4BQ8IWT1 228 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 MYLIPQ8WY64 445 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 KRT12Q99456 494 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 NAP1L3Q99457 506 aaPredicted RBP14.1□□□□□ -0.15
LIMS1-204ENST00000409441 SMOQ99835 787 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 CARD9Q9H257 536 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 LHX5Q9H2C1 402 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 CSNK1G1Q9HCP0 422 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 TMEM30AQ9NV96 361 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 DPP7Q9UHL4 492 aa14.1□□□□□ -0.15
LIMS1-204ENST00000409441 F8VP50 259 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 M0QYV0 167 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 POLR3GO15318 223 aaPredicted RBP14.09□□□□□ -0.15
LIMS1-204ENST00000409441 DDX3YO15523 660 aaKnown RBP14.09□□□□□ -0.15
LIMS1-204ENST00000409441 NPR3P17342 541 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 GPD2P43304 727 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 ALDH1A3P47895 512 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 SLC8A3P57103 927 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 RPL10AP62906 217 aaKnown RBP14.09□□□□□ -0.15
LIMS1-204ENST00000409441 SLC7A5Q01650 507 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 FMO1Q01740 532 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 PDE4CQ08493 712 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 KCNC3Q14003 757 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 LIN9Q5TKA1 542 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 CLEC20AQ6ZU45 233 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 PASD1Q8IV76 773 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 WDTC1Q8N5D0 677 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 EFHBQ8N7U6 833 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 VN1R2Q8NFZ6 395 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 SLC7A14Q8TBB6 771 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 C8orf48Q96LL4 319 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 GUCD1Q96NT3 240 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 GOLPH3Q9H4A6 298 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 SLITRK6Q9H5Y7 841 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 MAN1C1Q9NR34 630 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 MTMR10Q9NXD2 777 aa14.09□□□□□ -0.15
LIMS1-204ENST00000409441 CYP1A2P05177 515 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 C8AP07357 584 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 GPR15P49685 360 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 BCAT1P54687 386 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 BST2Q10589 180 aaKnown RBP14.08□□□□□ -0.15
LIMS1-204ENST00000409441 SDHAF4Q5VUM1 108 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 TMEM184AQ6ZMB5 413 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 RTL10Q7L3V2 364 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 MICALL1Q8N3F8 863 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 ZMIZ2Q8NF64 920 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 SLC35F5Q8WV83 523 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 PCDHB18PQ96TA0 734 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 DMAP1Q9NPF5 467 aaPredicted RBP14.08□□□□□ -0.15
LIMS1-204ENST00000409441 CTTNBP2NLQ9P2B4 639 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 UVRAGQ9P2Y5 699 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 INSL5Q9Y5Q6 135 aa14.08□□□□□ -0.15
LIMS1-204ENST00000409441 COL4A4P53420 1690 aaPredicted RBP14.08□□□□□ -0.15
LIMS1-204ENST00000409441 PRRC2BQ5JSZ5 2229 aaKnown RBP14.08□□□□□ -0.16
LIMS1-204ENST00000409441 BHMG1C9JSJ3 638 aaPredicted RBP14.08□□□□□ -0.16
LIMS1-204ENST00000409441 TULP2O00295 520 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 TRIM66O15016 1216 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 LINC01565O15544 149 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 SETSIPP0DME0 302 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 TWF1Q12792 350 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 ADAM15Q13444 863 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 PPM1LQ5SGD2 360 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 ELMSAN1Q6PJG2 1045 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 SND1Q7KZF4 910 aaKnown RBP eCLIP14.08□□□□□ -0.16
LIMS1-204ENST00000409441 PIGZQ86VD9 579 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 GSPT2Q8IYD1 628 aaKnown RBP14.08□□□□□ -0.16
LIMS1-204ENST00000409441 UBL4BQ8N7F7 174 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 TMEM35BQ8NCS4 154 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 GPR152Q8TDT2 470 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 GIPC2Q8TF65 315 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 CASP10Q92851 521 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 EXOC4Q96A65 974 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 EPB41L5Q9HCM4 733 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 PSD3Q9NYI0 1048 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 COG5Q9UP83 839 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 SSUH2Q9Y2M2 353 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 YIPF1Q9Y548 306 aa14.08□□□□□ -0.16
LIMS1-204ENST00000409441 CEP83Q9Y592 693 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms