RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SPATA17Q96L03 361 aa10.98□□□□□ -0.65
NEDD8-202ENST00000396828 TTLL2Q9BWV7 592 aa10.98□□□□□ -0.65
NEDD8-202ENST00000396828 TRIM5Q9C035 493 aa10.98□□□□□ -0.65
NEDD8-202ENST00000396828 ZNF518BQ9C0D4 1074 aa10.98□□□□□ -0.65
NEDD8-202ENST00000396828 ZDHHC4Q9NPG8 344 aa10.98□□□□□ -0.65
NEDD8-202ENST00000396828 SMPD4Q9NXE4 827 aa10.98□□□□□ -0.65
NEDD8-202ENST00000396828 ARHGAP26Q9UNA1 814 aa10.98□□□□□ -0.65
NEDD8-202ENST00000396828 SLC16A3O15427 465 aaKnown RBP10.97□□□□□ -0.65
NEDD8-202ENST00000396828 CBFA2T2O43439 604 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 CHRM1P11229 460 aaPredicted RBP10.97□□□□□ -0.65
NEDD8-202ENST00000396828 ZNF18P17022 549 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 PTPN1P18031 435 aaKnown RBP10.97□□□□□ -0.65
NEDD8-202ENST00000396828 TNNI1P19237 187 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 MPLP40238 635 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 MYL6P60660 151 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 CYP24A1Q07973 514 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 TAF10Q12962 218 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 WDR72Q3MJ13 1102 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 CCDC40Q4G0X9 1142 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 FILIP1LQ4L180 1135 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 C2orf27AQ580R0 203 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 HSP90AA4PQ58FG1 418 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 TCP11X2Q5H9J9 407 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 SARM1Q6SZW1 724 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 VSTM1Q6UX27 236 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 FILIP1Q7Z7B0 1213 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 C12orf40Q86WS4 652 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 C12orf56Q8IXR9 622 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 ADGRG2Q8IZP9 1017 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 OR6B3Q8NGW1 331 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 USP33Q8TEY7 942 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 TMEM174Q8WUU8 243 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 ATP2A3Q93084 1043 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 WBP2Q969T9 261 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 LOXL4Q96JB6 756 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 KCNK16Q96T55 309 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 B3GNT5Q9BYG0 378 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 TPSD1Q9BZJ3 242 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 XYLT2Q9H1B5 865 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 HSD3B7Q9H2F3 369 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 FRMD4BQ9Y2L6 1034 aa10.97□□□□□ -0.65
NEDD8-202ENST00000396828 KIAA0391O15091 583 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 EXOC3O60645 756 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 TACC1O75410 805 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 AKAP3O75969 853 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 APBB3O95704 486 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 OLFM2O95897 454 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 ABL1P00519 1130 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 CYP17A1P05093 508 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 EPB41P11171 864 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 ATP1A3P13637 1013 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 TCF3P15923 654 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 BCKDHBP21953 392 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 PSMC2P35998 433 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 MTIF2P46199 727 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 PGFP49763 221 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 LIMK1P53667 647 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 NOP14P78316 857 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 SLC7A9P82251 487 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 FANCCQ00597 558 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 AMPD2Q01433 879 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 IFRD2Q12894 506 aaPredicted RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 PSMD6Q15008 389 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 SURF1Q15526 300 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 FBXO43Q4G163 708 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 N4BP2L1Q5TBK1 243 aaPredicted RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 STPG1Q5TH74 334 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 EMC10Q5UCC4 262 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 CEP135Q66GS9 1140 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 RHBDF2Q6PJF5 856 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 TMEM92Q6UXU6 159 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 PAQR9Q6ZVX9 377 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 SLC9A9Q8IVB4 645 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 ZC3H3Q8IXZ2 948 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 CCDC33Q8N5R6 958 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 FRMD1Q8N878 549 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 CNOT6LQ96LI5 555 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 C8orf48Q96LL4 319 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 CGRRF1Q99675 332 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 SDCBP2Q9H190 292 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 SNX25Q9H3E2 840 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 SMYD3Q9H7B4 428 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 METTL14Q9HCE5 456 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 TRPM5Q9NZQ8 1165 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 NXF1Q9UBU9 619 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 EBF1Q9UH73 591 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 CHORDC1Q9UHD1 332 aaPredicted RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 R3HCC1Q9Y3T6 440 aaKnown RBP10.96□□□□□ -0.65
NEDD8-202ENST00000396828 CPQQ9Y646 472 aa10.96□□□□□ -0.65
NEDD8-202ENST00000396828 NUP205Q92621 2012 aa10.96□□□□□ -0.66
NEDD8-202ENST00000396828 ADCY5O95622 1261 aa10.95□□□□□ -0.66
NEDD8-202ENST00000396828 OAS1P00973 400 aaKnown RBP10.95□□□□□ -0.66
NEDD8-202ENST00000396828 DGKEP52429 567 aa10.95□□□□□ -0.66
NEDD8-202ENST00000396828 UBASH3AP57075 661 aa10.95□□□□□ -0.66
NEDD8-202ENST00000396828 CREB5Q02930 508 aa10.95□□□□□ -0.66
NEDD8-202ENST00000396828 DHCR24Q15392 516 aa10.95□□□□□ -0.66
NEDD8-202ENST00000396828 TDRD10Q5VZ19 366 aaKnown RBP10.95□□□□□ -0.66
NEDD8-202ENST00000396828 IL31Q6EBC2 164 aa10.95□□□□□ -0.66
NEDD8-202ENST00000396828 C12orf50Q8NA57 414 aaPredicted RBP10.95□□□□□ -0.66
NEDD8-202ENST00000396828 XXYLT1Q8NBI6 393 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms