RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 GRM2Q14416 872 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 TEX44Q53QW1 395 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 SH2D4BQ5SQS7 431 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 TATDN1Q6P1N9 297 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 DARS2Q6PI48 645 aaKnown RBP16.48■□□□□ 0.23
CKAP4-201ENST00000378026 C1orf228Q6PIY5 440 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 TRIM72Q6ZMU5 477 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 LDHDQ86WU2 507 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 VCPIP1Q96JH7 1222 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 CLMNQ96JQ2 1002 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 UBAP1Q9NZ09 502 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 CDH22Q9UJ99 828 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 POMPQ9Y244 141 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 SDR42E2A6NKP2 422 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 ADCY3O60266 1144 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 KCNA4P22459 653 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 RFC1P35251 1148 aaPredicted RBP16.48■□□□□ 0.23
CKAP4-201ENST00000378026 RC3H1Q5TC82 1133 aaKnown RBP16.48■□□□□ 0.23
CKAP4-201ENST00000378026 HHIPL2Q6UWX4 724 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 ZFP28Q8NHY6 868 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 SPATA18Q8TC71 538 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 ZBTB45Q96K62 511 aaPredicted RBP16.48■□□□□ 0.23
CKAP4-201ENST00000378026 PRICKLE1Q96MT3 831 aaPredicted RBP16.48■□□□□ 0.23
CKAP4-201ENST00000378026 ST6GALNAC4Q9H4F1 302 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 APOBEC2Q9Y235 224 aaKnown RBP16.48■□□□□ 0.23
CKAP4-201ENST00000378026 MAD1L1Q9Y6D9 718 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 AK5Q9Y6K8 562 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 E2F8A0AVK6 867 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 SERPINB2P05120 415 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 EIF2AK2P19525 551 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 PCSK6P29122 969 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 ZACNQ401N2 412 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 ZBTB41Q5SVQ8 909 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 TRIM42Q8IWZ5 723 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 CPXCR1Q8N123 301 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 KCTD6Q8NC69 237 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 FBXL18Q96ME1 805 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 PRPF18Q99633 342 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 SMYD2Q9NRG4 433 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 RAB6BQ9NRW1 208 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 PTTG2Q9NZH5 202 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 TMOD2Q9NZR1 351 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 ZC3H7BQ9UGR2 993 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 HEMK1Q9Y5R4 338 aaPredicted RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 NDC80O14777 642 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 RFPL1O75677 317 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 LIG4P49917 911 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 ADARP55265 1226 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 SNRPFP62306 86 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 MTMR1Q13613 665 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 ACAP1Q15027 740 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 MAP3K21Q5TCX8 1036 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 WDR75Q8IWA0 830 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 MAP7D3Q8IWC1 876 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 JOSD2Q8TAC2 188 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 TMEM174Q8WUU8 243 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 CEP170P1Q96L14 293 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 TDRD3Q9H7E2 651 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 DDX56Q9NY93 547 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 TEX264Q9Y6I9 313 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 NFIBO00712 420 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 ZC3H11AO75152 810 aaKnown RBP eCLIP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 RPL5P46777 297 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 ALDH1A3P47895 512 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 MMRN1Q13201 1228 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 DBN1Q16643 649 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 TKFCQ3LXA3 575 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 RBM12BQ8IXT5 1001 aaKnown RBP16.47■□□□□ 0.23
CKAP4-201ENST00000378026 C1orf21Q9H246 121 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 SIRPGQ9P1W8 387 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 PPME1Q9Y570 386 aa16.47■□□□□ 0.23
CKAP4-201ENST00000378026 C3orf70A6NLC5 250 aaPredicted RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 MCF2LO15068 1137 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 C4BPAP04003 597 aaKnown RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 FDFT1P37268 417 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 CNGA3Q16281 694 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 MYLK3Q32MK0 819 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 PPP6R3Q5H9R7 873 aaPredicted RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 GPAT2Q6NUI2 795 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 ADGRG6Q86SQ4 1221 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 GALNT4Q8N4A0 578 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 AGO4Q9HCK5 861 aaKnown RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 COL5A3P25940 1745 aaPredicted RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 FOCADQ5VW36 1801 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 ZNF541Q9H0D2 1346 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 H7C0C1 242 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 ATP9BO43861 1147 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 SIN3BO75182 1162 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 STAM2O75886 525 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 BPGMP07738 259 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 CSH1P0DML2 217 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 CSH2P0DML3 217 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 KDELR1P24390 212 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 ATP5OP48047 213 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 SH3BGRP55822 239 aaPredicted RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 TBL3Q12788 808 aaKnown RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 PIGHQ14442 188 aaPredicted RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 FASTKD1Q53R41 847 aaKnown RBP16.46■□□□□ 0.23
CKAP4-201ENST00000378026 SCARA5Q6ZMJ2 495 aa16.46■□□□□ 0.23
CKAP4-201ENST00000378026 C15orf39Q6ZRI6 1047 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms