RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 PPP1R10Q96QC0 940 aaKnown RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 CROCC2H7BZ55 1655 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 A0A087WXM4 84 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 SUPT7LO94864 414 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 APBA3O96018 575 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 PRKAR1AP10644 381 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 CPA2P48052 419 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 IRAK1P51617 712 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF846Q147U1 533 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 CCDC24Q8N4L8 307 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 FAM172AQ8WUF8 416 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 NMRK2Q9NPI5 230 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 DYRK1BQ9Y463 629 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 HPCAL1P37235 193 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 NAIF1Q69YI7 327 aaPredicted RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 EXOC3L1Q86VI1 746 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 OR7A2PQ8NGA2 310 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 Q96MT0 163 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 CD248Q9HCU0 757 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 RSL24D1Q9UHA3 163 aaKnown RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 PFDN2Q9UHV9 154 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 USP11P51784 963 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 ITGA8P53708 1063 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SNRPFP62306 86 aaKnown RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 NACC2Q96BF6 587 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 LGR6Q9HBX8 967 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 CMTM6Q9NX76 183 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 AP3M1Q9Y2T2 418 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 STX16-NPEPL1H3BU86 382 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 STX16O14662 325 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 KPNA1P52294 538 aaPredicted RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SRP54P61011 504 aaKnown RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SPIRE1Q08AE8 756 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 LRRC17Q8N6Y2 441 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 MYLPFQ96A32 169 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SHANK2Q9UPX8 1470 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 VPS4BO75351 444 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 APOC1P02654 83 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 ITGA3P26006 1051 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 FAM98CQ17RN3 349 aaKnown RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 INO80DQ53TQ3 878 aaPredicted RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 B3GNT6Q6ZMB0 384 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 FAM228AQ86W67 206 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 AMER2Q8N7J2 671 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 TDRD5Q8NAT2 981 aaKnown RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 HAO1Q9UJM8 370 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 TBCELQ5QJ74 424 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 TTC27Q6P3X3 843 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 HEY2Q9UBP5 337 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 PRKAG3Q9UGI9 489 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 WBP11Q9Y2W2 641 aaKnown RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 CASZ1Q86V15 1759 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 TADA2AO75478 443 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 YY1P25490 414 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SLC29A2Q14542 456 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 JAMLQ86YT9 394 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 ZDHHC13Q8IUH4 622 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 EEF1AKMT1Q8WVE0 214 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 GPRASP2Q96D09 838 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 REPS1Q96D71 796 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 WHRNQ9P202 907 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 GSAPA4D1B5 854 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 CYP26A1O43174 497 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SMNDC1O75940 238 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 PTGES3Q15185 160 aaKnown RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 TMEM132CQ8N3T6 1108 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 VPS51Q9UID3 782 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SKAP2O75563 359 aaPredicted RBP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 MFSD14CQ5VZR4 134 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 B3GALNT2Q8NCR0 500 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SPIRE2Q8WWL2 714 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 WDR24Q96S15 920 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 CLPBQ9H078 707 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 ANAPC2Q9UJX6 822 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SNX9Q9Y5X1 595 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 RBBP4Q09028 425 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 CDH18Q13634 790 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 SERAC1Q96JX3 654 aa11.98□□□□□ -0.49
VPS13A-205ENST00000376636 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS13A-205ENST00000376636 GRIK3Q13003 919 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 QPRTQ15274 297 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 SLC13A5Q86YT5 568 aaPredicted RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PPP1R14BQ96C90 147 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 GABBR1Q9UBS5 961 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 CHORDC1Q9UHD1 332 aaPredicted RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF222Q9UK12 451 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 GPATCH8Q9UKJ3 1502 aaKnown RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF185O15231 689 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 SCGNO76038 276 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 RARBP10826 455 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PTPN4P29074 926 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 SV2CQ496J9 727 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 SNRNP48Q6IEG0 339 aaKnown RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF669Q96BR6 464 aaPredicted RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 ELOVL6Q9H5J4 265 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 PTSQ03393 145 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 CPA5Q8WXQ8 436 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 FAM120BQ96EK7 910 aaKnown RBP11.97□□□□□ -0.49
VPS13A-205ENST00000376636 FAM111AQ96PZ2 611 aa11.97□□□□□ -0.49
VPS13A-205ENST00000376636 ADPRHL2Q9NX46 363 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms