RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 EMC1Q8N766 993 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 RXFP2Q8WXD0 754 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 RPRD1AQ96P16 312 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 PDCD2LQ9BRP1 358 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 APOL5Q9BWW9 433 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 NCKIPSDQ9NZQ3 722 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 TRMT6Q9UJA5 497 aaKnown RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 HEATR9A2RTY3 570 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 PGK2P07205 417 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 TFE3P19532 575 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 YY1P25490 414 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 MYL6P60660 151 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 PSMC6P62333 389 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 MEA1Q16626 185 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 TRMT5Q32P41 509 aaKnown RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 EARS2Q5JPH6 523 aaKnown RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 ZNF484Q5JVG2 852 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 TMC3Q7Z5M5 1100 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 TXNRD3Q86VQ6 643 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 FAM131BQ86XD5 332 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 ANKRD13AQ8IZ07 590 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 HDAC7Q8WUI4 952 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 AP4S1Q9Y587 144 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 V9GYQ6 96 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 PRRG1O14668 218 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 RIPK2O43353 540 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 MAPTP10636 758 aaKnown RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 OR1G1P47890 313 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 MPP3Q13368 585 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 OLFML2BQ68BL8 750 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 HORMAD1Q86X24 394 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 ZNF786Q8N393 782 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 ATP6V0D2Q8N8Y2 350 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 JADE3Q92613 823 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 VCPIP1Q96JH7 1222 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 GPATCH2LQ9NWQ4 482 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 SEPT3Q9UH03 358 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 DDX20Q9UHI6 824 aaKnown RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 TAGLN3Q9UI15 199 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 CRLS1Q9UJA2 301 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 SERPIND1P05546 499 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 ZCCHC18P0CG32 403 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 VCAM1P19320 739 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 RARRES1P49788 294 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 ORC1Q13415 861 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 PCNX4Q63HM2 1172 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 UGT3A1Q6NUS8 523 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 WDR49Q8IV35 697 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 HOMEZQ8IX15 550 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 MCOLN2Q8IZK6 566 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 GPC2Q8N158 579 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 SNX31Q8N9S9 440 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 BLOC1S5Q8TDH9 187 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 PNMA5Q96PV4 448 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 AP4E1Q9UPM8 1137 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 SCAF8Q9UPN6 1271 aaKnown RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 KCNH4Q9UQ05 1017 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-203ENST00000372407 AK9Q5TCS8 1911 aa11.8□□□□□ -0.52
PTPRF-203ENST00000372407 OCM2P0CE71 109 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 OCMP0CE72 109 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 SERPINB5P36952 375 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 CHRNB3Q05901 458 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 MGAT5Q09328 741 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 ZNF606Q8WXB4 792 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 RUVBL2Q9Y230 463 aaKnown RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 RGPD8O14715 1765 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 TCRBV5S4A2TA0A5A2 114 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 DDX3XO00571 662 aaKnown RBP eCLIP11.79□□□□□ -0.527e-10■■□□□ 12.8
PTPRF-203ENST00000372407 JCHAINP01591 159 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 SLC26A2P50443 739 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 STRA8Q7Z7C7 330 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 TRIM69Q86WT6 500 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 DNAAF5Q86Y56 855 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 GMCL1P1Q8NEA9 526 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 B4GALNT2Q8NHY0 566 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 PGM2Q96G03 612 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 VPS50Q96JG6 964 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 TMEM120AQ9BXJ8 343 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 PRG3Q9Y2Y8 225 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 VWA5AO00534 786 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 USP1O94782 785 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 RBP1P09455 135 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 PSMC3P17980 439 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 TMED10P49755 219 aaKnown RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 PEX5P50542 639 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 GCNT1Q02742 428 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 ZNF844Q08AG5 666 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 ADGRA1Q86SQ6 560 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 ATXN2LQ8WWM7 1075 aaKnown RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 USP13Q92995 863 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 ZNF333Q96JL9 665 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 CNBD2Q96M20 576 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 ANKRD27Q96NW4 1050 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 ABI2Q9NYB9 513 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 KLK14Q9P0G3 267 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 SNX13Q9Y5W8 968 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 C2orf81A6NN90 581 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 GOLGA8TH3BQL2 631 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 BGNP21810 368 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms