RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 OR6B3Q8NGW1 331 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 NPLOC4Q8TAT6 608 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 STK32AQ8WU08 396 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 OSMRQ99650 979 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 GJD2Q9UKL4 321 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 CDC42EP1Q00587 391 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 FAM182AQ5T1J6 154 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 C9orf57Q5W0N0 161 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 NOTUMQ6P988 496 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 UNC93AQ86WB7 457 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 PCDH19Q8TAB3 1148 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 MZB1Q8WU39 189 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 TBCBQ99426 244 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 SNRNP25Q9BV90 132 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 DPEP3Q9H4B8 488 aa21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 SSU72Q9NP77 194 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-203ENST00000359902 ELK3P41970 407 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 HDAC4P56524 1084 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 DNAJC3Q13217 504 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 ARHGAP17Q68EM7 881 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 SLC9A4Q6AI14 798 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 PLEKHH3Q7Z736 793 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 DCAKDQ8WVC6 231 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 SPOCK2Q92563 424 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 RMDN2Q96LZ7 410 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 NXF3Q9H4D5 531 aaKnown RBP21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 CNTN3Q9P232 1028 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 CHMP2BQ9UQN3 213 aa21.7■■□□□ 1.06
CCDC88B-203ENST00000359902 APOL1O14791 398 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 HCRTO43612 131 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 SMIM10L2AP0DMW4 78 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 SMIM10L2BP0DMW5 78 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 TGM2P21980 687 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 MSH2P43246 934 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 BCAR1P56945 870 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 MGAT5Q09328 741 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 PDK4Q16654 411 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 RNF43Q68DV7 783 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 FITM2Q8N6M3 262 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 GBP7Q8N8V2 638 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 RTP4Q96DX8 246 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 KLHL14Q9P2G3 628 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 HEY1Q9Y5J3 304 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 TEX264Q9Y6I9 313 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 RALGAPA2Q2PPJ7 1873 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 GLTPD2A6NH11 291 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 CHADO15335 359 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 KCNN4O15554 427 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 DYNC1LI2O43237 492 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 RECQL4O94761 1208 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 DARSP14868 501 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 TFE3P19532 575 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 SNX16P57768 344 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 SYCP2LQ5T4T6 812 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 ICE2Q659A1 982 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 VSIG1Q86XK7 387 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 ZDHHC17Q8IUH5 632 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 C7orf31Q8N865 590 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 FAF2Q96CS3 445 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 RXFP1Q9HBX9 757 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 PAK5Q9P286 719 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 STARD13Q9Y3M8 1113 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 NRCAMQ92823 1304 aa21.69■■□□□ 1.06
CCDC88B-203ENST00000359902 A8MXQ7 604 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 MDM4O15151 490 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 ATP2A2P16615 1042 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 AKAP5P24588 427 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 BNIP1Q12981 228 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 PARP9Q8IXQ6 854 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 CCDC63Q8NA47 563 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 UPF1Q92900 1129 aaKnown RBP eCLIP21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 RAB6BQ9NRW1 208 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 SMIM35A0A1B0GVV1 85 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 A6NJR5 290 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 RBL1P28749 1068 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 CBLBQ13191 982 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 ECHDC2Q86YB7 292 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 CLEC4CQ8WTT0 213 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 CYTH2Q99418 400 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 SLCO1B3Q9NPD5 702 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 PHTF1Q9UMS5 762 aa21.68■■□□□ 1.06
CCDC88B-203ENST00000359902 BCLAF3A2AJT9 711 aaKnown RBP21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 MBLAC1A4D2B0 266 aaPredicted RBP21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 AVILO75366 819 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 PDGFRBP09619 1106 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 NCALDP61601 193 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 ELF3P78545 371 aaPredicted RBP21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 HIC1Q14526 733 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 PCBP1Q15365 356 aaKnown RBP eCLIP21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 PRAMEF19Q5SWL8 479 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 HHATQ5VTY9 493 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 AGGF1Q8N302 714 aaeCLIP21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 KBTBD7Q8WVZ9 684 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 NCAPGQ9BPX3 1015 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 ZNF670Q9BS34 389 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 C11orf84Q9BUA3 381 aaPredicted RBP21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 APOL6Q9BWW8 343 aa21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 TRIM6Q9C030 488 aaPredicted RBP21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 UBQLN1Q9UMX0 589 aaKnown RBP21.67■■□□□ 1.06
CCDC88B-203ENST00000359902 CLEC11AQ9Y240 323 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms