RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 PDZD8Q8NEN9 1154 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 SCUBE2Q9NQ36 999 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 SENP1Q9P0U3 644 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 MAP1BP46821 2468 aaKnown RBP17■□□□□ 0.31
SMARCA4-201ENST00000344626 FGFR1P11362 822 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 ART3Q13508 389 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 RNF135Q8IUD6 432 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 CDH9Q9ULB4 789 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 RWDD3Q9Y3V2 267 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 SLC9A3R1O14745 358 aaPredicted RBP17■□□□□ 0.31
SMARCA4-201ENST00000344626 RENBPP51606 427 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 CLDND1Q9NY35 253 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 USP18Q9UMW8 372 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 NEU2Q9Y3R4 380 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 CDY1Q9Y6F8 540 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 A0A087X0T9 212 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 MICAL2O94851 1124 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 FAM228BP0C875 321 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 TRIB2Q92519 343 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 MAML1Q92585 1016 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 SLC35C1Q96A29 364 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 XAB2Q9HCS7 855 aaKnown RBP17■□□□□ 0.31
SMARCA4-201ENST00000344626 MORF4L1Q9UBU8 362 aa17■□□□□ 0.31
SMARCA4-201ENST00000344626 MRPL42Q9Y6G3 142 aaKnown RBP17■□□□□ 0.31
SMARCA4-201ENST00000344626 MCL1Q07820 350 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 ZNF618Q5T7W0 954 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 KIRREL3Q8IZU9 778 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 TBCBQ99426 244 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 TRIM55Q9BYV6 548 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 EML4Q9HC35 981 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 CRLS1Q9UJA2 301 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 COL16A1Q07092 1604 aaPredicted RBP16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 CSH1P0DML2 217 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 CSH2P0DML3 217 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 GPM6BQ13491 265 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 TRMT10CQ7L0Y3 403 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 RBM15Q96T37 977 aaKnown RBP eCLIP16.99■□□□□ 0.312e-6■■■■□ 21.5
SMARCA4-201ENST00000344626 AIPL1Q9NZN9 384 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 A0A0A6YYK5 440 aaPredicted RBP16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 USP27XA6NNY8 438 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 CLCN6P51797 869 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 RHOAP61586 193 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 TTC31Q49AM3 519 aaPredicted RBP16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 TFDP3Q5H9I0 405 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 FSCBQ5H9T9 825 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 SDHAF4Q5VUM1 108 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 NPAS4Q8IUM7 802 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 PHRF1Q9P1Y6 1649 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 ESYT3A0FGR9 886 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 PROSCO94903 275 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 MAP3K6O95382 1288 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 PTPN1P18031 435 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 NCKAP1LP55160 1127 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 ADCK2Q7Z695 626 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 ANKMY2Q8IV38 441 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 ADAM32Q8TC27 787 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 C18orf25Q96B23 403 aaPredicted RBP16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 GOLGA2P5Q9HBQ8 144 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 DERAQ9Y315 318 aa16.99■□□□□ 0.31
SMARCA4-201ENST00000344626 TRAV19A0A0A6YYK7 116 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 RRM1P23921 792 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 IFNA8P32881 189 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 RBBP7Q16576 425 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 ARMC6Q6NXE6 501 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 EMC1Q8N766 993 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 TCF25Q9BQ70 676 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 STN1Q9H668 368 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 SYF2O95926 243 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 CCDC130P13994 396 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 PPIL6Q8IXY8 311 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 TRIM33Q9UPN9 1127 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 GABRR2P28476 465 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 ATP5C1P36542 298 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 TNFSF9P41273 254 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 ZNF135P52742 658 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 RAB30Q15771 203 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 ZRANB3Q5FWF4 1079 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 AARS2Q5JTZ9 985 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 TRIM48Q8IWZ4 208 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 HS6ST3Q8IZP7 471 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 RSRC1Q96IZ7 334 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 FAM129AQ9BZQ8 928 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 LATS2Q9NRM7 1088 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 C20orf96Q9NUD7 363 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 APOBEC2Q9Y235 224 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 INSL6Q9Y581 213 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 A0A1W2PQ45 241 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 A0A1W2PQY0 241 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 PCK1P35558 622 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 TFAP2DQ7Z6R9 452 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 LMNTD2Q8IXW0 634 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 FAM71DQ8N9W8 422 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 SUSD6Q92537 303 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 FGD4Q96M96 766 aa16.98■□□□□ 0.31
SMARCA4-201ENST00000344626 GFAPP14136 432 aa16.97■□□□□ 0.31
SMARCA4-201ENST00000344626 SPRP35270 261 aaPredicted RBP16.97■□□□□ 0.31
SMARCA4-201ENST00000344626 HADHAP40939 763 aa16.97■□□□□ 0.31
SMARCA4-201ENST00000344626 FUT2Q10981 343 aa16.97■□□□□ 0.31
SMARCA4-201ENST00000344626 SLC13A5Q86YT5 568 aaPredicted RBP16.97■□□□□ 0.31
SMARCA4-201ENST00000344626 MS4A14Q96JA4 679 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms