RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NAV1Q8NEY1 1877 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 A0A087WXM4 84 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 KPNA4O00629 521 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 TSTA3Q13630 321 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 RRM2BQ7LG56 351 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC7A14Q8TBB6 771 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 C1orf50Q9BV19 199 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 STMN3Q9NZ72 180 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 DISP2A7MBM2 1401 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 CYP3A7-CYP3A51PA0A087WV96 503 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 C2orf81A6NN90 581 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 H3BNX3 289 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF263O14978 683 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SERPINI2O75830 405 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 CYP3A7P24462 503 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ATP6V1E1P36543 226 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 GNL1P36915 607 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ZPBP2Q6X784 338 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SPOCD1Q6ZMY3 1216 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SVOPQ8N4V2 548 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC10A4Q96EP9 437 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ATAD3AQ9NVI7 634 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ADAM30Q9UKF2 790 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 PRDM4Q9UKN5 801 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SQORQ9Y6N5 450 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 CAPN15O75808 1086 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 CCDC130P13994 396 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 IL1R1P14778 569 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SPATA2LQ8IUW3 424 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 MAGEB10Q96LZ2 347 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 QTRT2Q9H974 415 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 SIK3Q9Y2K2 1263 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 AP5Z1O43299 807 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 LCP1P13796 627 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 ACOT2P49753 483 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 PRKG1Q13976 671 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 CDC42EP5Q6NZY7 148 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 NUDT18Q6ZVK8 323 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 AFG1LQ8WV93 481 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 CKAP2Q8WWK9 683 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 TDRD3Q9H7E2 651 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 TSC22D4Q9Y3Q8 395 aa10.62□□□□□ -0.71
CCDC88A-202ENST00000336838 PXDNQ92626 1479 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 FAM170AA1A519 330 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 RDH11Q8TC12 318 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SYTL2Q9HCH5 934 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 UBQLN1Q9UMX0 589 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 PPP2R3BQ9Y5P8 575 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 ODC1P11926 461 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 MTMR2Q13614 643 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 NFIXQ14938 502 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 C6orf10Q5SRN2 563 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC5A5Q92911 643 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 TBC1D13Q9NVG8 400 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF446Q9NWS9 450 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 PDE5AO76074 875 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 C17orf80Q9BSJ5 609 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SELENONQ9NZV5 590 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 POU4F1Q01851 419 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 TBL3Q12788 808 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 NFIL3Q16649 462 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 DENND1BQ6P3S1 775 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 IZUMO2Q6UXV1 221 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF572Q7Z3I7 529 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 DCP1BQ8IZD4 617 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SYNE4Q8N205 404 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF669Q96BR6 464 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 ECSITQ9BQ95 431 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF408Q9H9D4 720 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 BTBD7Q9P203 1132 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 MYRFQ9Y2G1 1151 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 NUP98P52948 1817 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC4A1P02730 911 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 MMP13P45452 471 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 ERVK-9P63128 1117 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 PLOD1Q02809 727 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 P3H2Q8IVL5 708 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 FAM163AQ96GL9 167 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 DDX28Q9NUL7 540 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 HEATR9A2RTY3 570 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 PDK4Q16654 411 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 MROH9Q5TGP6 573 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SLFN11Q7Z7L1 901 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 MMTAG2Q9BU76 263 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 MUC13Q9H3R2 512 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SPATA31A1Q5TZJ5 1347 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SUPT3HB4E1H0 165 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 CYP1A2P05177 515 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 TPBGLP0DKB5 382 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 TAF6P49848 677 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 MMRN1Q13201 1228 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 GOLGA7BQ2TAP0 167 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 HABP4Q5JVS0 413 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 FKBP1CQ5VVH2 108 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 TTC27Q6P3X3 843 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 TDRD5Q8NAT2 981 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 PARD3BQ8TEW8 1205 aa10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 MRPS26Q9BYN8 205 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-202ENST00000336838 SPATA31A6Q5VVP1 1343 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms