RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PSMA3P25788 255 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 SCNN1BP51168 640 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 C11orf63Q6NUN7 778 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 MTSS1LQ765P7 747 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 TFAP2DQ7Z6R9 452 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 FAM131BQ86XD5 332 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 ILKAPQ9H0C8 392 aaPredicted RBP13.02□□□□□ -0.33
SDC3-201ENST00000336798 KDM6AO15550 1401 aaPredicted RBP13.02□□□□□ -0.33
SDC3-201ENST00000336798 EIF3HO15372 352 aaKnown RBP eCLIP13.02□□□□□ -0.33
SDC3-201ENST00000336798 KLHL18O94889 574 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 ACAD10Q6JQN1 1059 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 CCNI2Q6ZMN8 369 aaPredicted RBP13.02□□□□□ -0.33
SDC3-201ENST00000336798 LRRC8DQ7L1W4 858 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 SH3BP5LQ7L8J4 393 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 TRAPPC11Q7Z392 1133 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 EDEM1Q92611 657 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 BCL2L14Q9BZR8 327 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 KCNF1Q9H3M0 494 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 MRGBPQ9NV56 204 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 DLGAP2Q9P1A6 1054 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 NYAP2Q9P242 653 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 DCDC2CA8MYV0 355 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 FAM25AB3EWG3 89 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 FAM25CB3EWG5 89 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 FAM25GB3EWG6 89 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 RAB14P61106 215 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 SEMA3FQ13275 785 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 LRIG3Q6UXM1 1119 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 NECAB2Q7Z6G3 386 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 USP13Q92995 863 aaPredicted RBP13.02□□□□□ -0.33
SDC3-201ENST00000336798 MTFMTQ96DP5 389 aaKnown RBP13.02□□□□□ -0.33
SDC3-201ENST00000336798 OMA1Q96E52 524 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 SERAC1Q96JX3 654 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 RMND5AQ9H871 391 aa13.02□□□□□ -0.33
SDC3-201ENST00000336798 DDI2Q5TDH0 399 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 SLFN11Q7Z7L1 901 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 PPP1R2P1Q96PQ5 205 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 MRPS26Q9BYN8 205 aaKnown RBP13.01□□□□□ -0.33
SDC3-201ENST00000336798 HAO1Q9UJM8 370 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 UBQLN1Q9UMX0 589 aaKnown RBP13.01□□□□□ -0.33
SDC3-201ENST00000336798 PCDHGA4Q9Y5G9 962 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 KLHL41O60662 606 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 ENO2P09104 434 aaPredicted RBP13.01□□□□□ -0.33
SDC3-201ENST00000336798 DGKKQ5KSL6 1271 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 GATAD2AQ86YP4 633 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 LPCAT1Q8NF37 534 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 SGSM3Q96HU1 749 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 FAR2Q96K12 515 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 SLC40A1Q9NP59 571 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 SMPD4Q9NXE4 827 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 HEY2Q9UBP5 337 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 ZNF609O15014 1411 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 BAIAP3O94812 1187 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 TMC7Q7Z402 723 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 STRA8Q7Z7C7 330 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 FAM151AQ8WW52 585 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 KIF1BO60333 1816 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 PSMD12O00232 456 aaPredicted RBP13.01□□□□□ -0.33
SDC3-201ENST00000336798 TPH1P17752 444 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 PNPLA4P41247 253 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 MIEF1Q9NQG6 463 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 PLA2G4CQ9UP65 541 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 PQBP1O60828 265 aaKnown RBP13.01□□□□□ -0.33
SDC3-201ENST00000336798 NR1I3Q14994 352 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 ATP6AP1LQ52LC2 224 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 CBWD2Q8IUF1 395 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 ANKRD13AQ8IZ07 590 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 CHST13Q8NET6 341 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 TPD52L3Q96J77 140 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 ERP44Q9BS26 406 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 SH3BP4Q9P0V3 963 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 LNPEPQ9UIQ6 1025 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 TUBE1Q9UJT0 475 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 IPPQ9Y573 584 aa13.01□□□□□ -0.33
SDC3-201ENST00000336798 TMEM253P0C7T8 217 aa13□□□□□ -0.33
SDC3-201ENST00000336798 STIP1P31948 543 aaKnown RBP13□□□□□ -0.33
SDC3-201ENST00000336798 LSP1P33241 339 aa13□□□□□ -0.33
SDC3-201ENST00000336798 SARSP49591 514 aaKnown RBP13□□□□□ -0.33
SDC3-201ENST00000336798 CENPCQ03188 943 aa13□□□□□ -0.33
SDC3-201ENST00000336798 MMRN1Q13201 1228 aa13□□□□□ -0.33
SDC3-201ENST00000336798 EMC1Q8N766 993 aa13□□□□□ -0.33
SDC3-201ENST00000336798 NMRK1Q9NWW6 199 aa13□□□□□ -0.33
SDC3-201ENST00000336798 PHTF1Q9UMS5 762 aa13□□□□□ -0.33
SDC3-201ENST00000336798 MOXD2PA6NHM9 499 aa13□□□□□ -0.33
SDC3-201ENST00000336798 TBKBP1A7MCY6 615 aa13□□□□□ -0.33
SDC3-201ENST00000336798 CAPN15O75808 1086 aa13□□□□□ -0.33
SDC3-201ENST00000336798 LTFP02788 710 aa13□□□□□ -0.33
SDC3-201ENST00000336798 NOS3P29474 1203 aa13□□□□□ -0.33
SDC3-201ENST00000336798 EXOSC10Q01780 885 aaKnown RBP13□□□□□ -0.33
SDC3-201ENST00000336798 TLK2Q86UE8 772 aa13□□□□□ -0.33
SDC3-201ENST00000336798 USP38Q8NB14 1042 aa13□□□□□ -0.33
SDC3-201ENST00000336798 PHF21BQ96EK2 531 aa13□□□□□ -0.33
SDC3-201ENST00000336798 CRAMP1Q96RY5 1269 aa13□□□□□ -0.33
SDC3-201ENST00000336798 SYBUQ9NX95 663 aa13□□□□□ -0.33
SDC3-201ENST00000336798 NCAPD2Q15021 1401 aa13□□□□□ -0.33
SDC3-201ENST00000336798 MSH4O15457 936 aa13□□□□□ -0.33
SDC3-201ENST00000336798 KLRK1P26718 216 aa13□□□□□ -0.33
SDC3-201ENST00000336798 EPHB3P54753 998 aa13□□□□□ -0.33
SDC3-201ENST00000336798 RCN1Q15293 331 aa13□□□□□ -0.33
SDC3-201ENST00000336798 RASGRP2Q7LDG7 609 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms