RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 NAMPTP43490 491 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 CSTF3Q12996 717 aaKnown RBP11.88□□□□□ -0.51
VPS39-201ENST00000318006 CCDC142Q17RM4 750 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 KYQ8NBH2 561 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 ASAP3Q8TDY4 903 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 MTERF3Q96E29 417 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 OTUB1Q96FW1 271 aaPredicted RBP11.88□□□□□ -0.51
VPS39-201ENST00000318006 PNMA5Q96PV4 448 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 C17orf80Q9BSJ5 609 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 TRIM54Q9BYV2 358 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 RNPEPQ9H4A4 650 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 SP110Q9HB58 689 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 OSGEPQ9NPF4 335 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 RIC8BQ9NVN3 520 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 A0A087X0B3 334 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 CFAP99D6REC4 459 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 DNALI1O14645 258 aaPredicted RBP11.88□□□□□ -0.51
VPS39-201ENST00000318006 TRIM24O15164 1050 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 ATP5BP06576 529 aaKnown RBP11.88□□□□□ -0.51
VPS39-201ENST00000318006 PSMC6P62333 389 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 CCNG2Q16589 344 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 SLC45A4Q5BKX6 768 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 SEL1L3Q68CR1 1132 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 DEFB132Q7Z7B7 95 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 PLEKHA5Q9HAU0 1116 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 SLC39A10Q9ULF5 831 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 RIC1Q4ADV7 1423 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 RRN3P2A6NIE6 340 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 SLCO1B7G3V0H7 640 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 PIK3CDO00329 1044 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 TLR2O60603 784 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 GZMAP12544 262 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 CPB1P15086 417 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 TGFB2P61812 414 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 MYBPC2Q14324 1141 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 DGKDQ16760 1214 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 TAF2Q6P1X5 1199 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 RINLQ6ZS11 566 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 ZNF669Q96BR6 464 aaPredicted RBP11.88□□□□□ -0.51
VPS39-201ENST00000318006 HPDLQ96IR7 371 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 ZBED2Q9BTP6 218 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 PXMP2Q9NR77 195 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 FAM49BQ9NUQ9 324 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 TMEM161AQ9NX61 479 aa11.88□□□□□ -0.51
VPS39-201ENST00000318006 A0A087WXM4 84 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 CCDC78A2IDD5 438 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 CTSHP09668 335 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 RALBP11234 206 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 CYP2B6P20813 491 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 CHRNB3Q05901 458 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 AGO4Q9HCK5 861 aaKnown RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 WTIPA6NIX2 430 aaPredicted RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 CHN2P52757 468 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 CDK16Q00536 496 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 MEA1Q16626 185 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 DACT2Q5SW24 774 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 C11orf63Q6NUN7 778 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 OLFML1Q6UWY5 402 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 FLCNQ8NFG4 579 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 PDCD6IPQ8WUM4 868 aaKnown RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 CKAP2Q8WWK9 683 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 GRIP2Q9C0E4 1043 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 A1CFQ9NQ94 594 aaKnown RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 ATXN10Q9UBB4 475 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 POLIQ9UNA4 740 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 RPL26L1Q9UNX3 145 aaKnown RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 ZC3H11AO75152 810 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS39-201ENST00000318006 GRAP2O75791 330 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 SMNDC1O75940 238 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS39-201ENST00000318006 SGPL1O95470 568 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 YY1P25490 414 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 CNTFP26441 200 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 NBPF12Q5TAG4 269 aaPredicted RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 RNF43Q68DV7 783 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 CCNJLQ8IV13 435 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 CALML6Q8TD86 181 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 MAGEC3Q8TD91 643 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 TMC2Q8TDI7 906 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 ECSITQ9BQ95 431 aa11.87□□□□□ -0.51
VPS39-201ENST00000318006 MRPS26Q9BYN8 205 aaKnown RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 NOL6Q9H6R4 1146 aaKnown RBP11.87□□□□□ -0.51
VPS39-201ENST00000318006 E9PBE3 544 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 RNF103O00237 685 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 KLHL41O60662 606 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 EFCAB14O75071 495 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 PYGMP11217 842 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 C4BPBP20851 252 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 DRD4P21917 467 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 RPL21P46778 160 aaKnown RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 SMTNL2Q2TAL5 461 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 TMEM119Q4V9L6 283 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 ERO1BQ86YB8 467 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 STKLD1Q8NE28 680 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 CYP2W1Q8TAV3 490 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 SPON2Q9BUD6 331 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 BAZ2BQ9UIF8 2168 aaKnown RBP11.86□□□□□ -0.51
VPS39-201ENST00000318006 MFN2O95140 757 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 ACADSBP45954 432 aa11.86□□□□□ -0.51
VPS39-201ENST00000318006 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms