RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 EARS2Q5JPH6 523 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 TRAPPC9Q96Q05 1148 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 APOL4Q9BPW4 351 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 ANKEF1Q9NU02 776 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 GTF2A1LQ9UNN4 478 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 FAM25AB3EWG3 89 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 FAM25CB3EWG5 89 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 FAM25GB3EWG6 89 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 BIRC5O15392 142 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 RGS20O76081 388 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 CACNA2D1P54289 1103 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 C1DQ13901 141 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 TMC3Q7Z5M5 1100 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 UXS1Q8NBZ7 420 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 MTMR8Q96EF0 704 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 KCNH7Q9NS40 1196 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 IL18RAPO95256 599 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 RPS7P62081 194 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 AKIRIN2Q53H80 203 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 DDI2Q5TDH0 399 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 STKLD1Q8NE28 680 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 OLFM1Q99784 485 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 ROGDIQ9GZN7 287 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 DCLRE1BQ9H816 532 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 ERAP1Q9NZ08 941 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 TJP2Q9UDY2 1190 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 NNMTP40261 264 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 TRMT5Q32P41 509 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 TKFCQ3LXA3 575 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 IZUMO2Q6UXV1 221 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 EFHBQ8N7U6 833 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 SHCBP1Q8NEM2 672 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 VPS37AQ8NEZ2 397 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 TLR10Q9BXR5 811 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 ATP6V1B2P21281 511 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 CACHD1Q5VU97 1274 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 ADCK2Q7Z695 626 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 PPIL6Q8IXY8 311 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 URGCPQ8TCY9 931 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 DIDO1Q9BTC0 2240 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 LAMA4Q16363 1823 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 SPRP35270 261 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 PRIM2P49643 509 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 MTMR2Q13614 643 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 EZH2Q15910 746 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 LMBRD2Q68DH5 695 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 DENND6AQ8IWF6 608 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 AGAP3Q96P47 875 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 HAO1Q9UJM8 370 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 PNMA3Q9UL41 463 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 ASCC3Q8N3C0 2202 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 PIK3R1P27986 724 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 NCKAP1LP55160 1127 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 POU4F1Q01851 419 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 KCNV1Q6PIU1 500 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 APOBEC3FQ8IUX4 373 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 FRMD8Q9BZ67 464 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 SLC7A5P2Q9GIP4 190 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 CTNNAL1Q9UBT7 734 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 PEX1O43933 1283 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 CALB2P22676 271 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 GTF2H3Q13889 308 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 XKR3Q5GH77 459 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 DGKKQ5KSL6 1271 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 C10orf53Q8N6V4 93 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 MRPL48Q96GC5 212 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 C9orf72Q96LT7 481 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 DUSP9Q99956 384 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 MCM8Q9UJA3 840 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 SRRM3A6NNA2 597 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 BTNL10A8MVZ5 291 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 POLBP06746 335 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 TSNQ15631 228 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF618Q5T7W0 954 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 SNX30Q5VWJ9 437 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 E2F7Q96AV8 911 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 RMND5BQ96G75 393 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 GMCL1Q96IK5 515 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 SPON2Q9BUD6 331 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 RMI1Q9H9A7 625 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 RARGP13631 454 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 CHI3L1P36222 383 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 CSE1LP55060 971 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 VTA1Q9NP79 307 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 SLC39A10Q9ULF5 831 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 HIST1H2AGP0C0S8 130 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 CYP11B1P15538 503 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 HIST1H2ADP20671 130 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 SULT1E1P49888 294 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF844Q08AG5 666 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 GJB7Q6PEY0 223 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 JADE3Q92613 823 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 HIST1H2AHQ96KK5 128 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 HIST1H2AJQ99878 128 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 H2AFJQ9BTM1 129 aa10.18□□□□□ -0.78
COL6A3-201ENST00000295550 DDX20Q9UHI6 824 aaKnown RBP10.18□□□□□ -0.78
COL6A3-201ENST00000295550 CENPXA8MT69 81 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 IL1R1P14778 569 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 PRKCEQ02156 737 aa10.17□□□□□ -0.78
COL6A3-201ENST00000295550 CHRNB3Q05901 458 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms