RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 SHKBP1Q8TBC3 707 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 NSUN6Q8TEA1 469 aaKnown RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 PPP1R16BQ96T49 567 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 EBF3Q9H4W6 596 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 ZNF277Q9NRM2 450 aaPredicted RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 APOBEC2Q9Y235 224 aaKnown RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 DNAJC16Q9Y2G8 782 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 APOC4-APOC2K7ER74 178 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 TGDSO95455 350 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 APOC2P02655 101 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 SPDYAQ5MJ70 313 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 RABGAP1LQ5R372 815 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 ARMC3Q5W041 872 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.28■□□□□ 0.04
CCNF-201ENST00000293968 HEXIM2Q96MH2 286 aaKnown RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 CPXM1Q96SM3 734 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 ASS1P00966 412 aaKnown RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 ETV4P43268 484 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 BCAR1P56945 870 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 RTP1P59025 263 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 C15orf59Q2T9L4 293 aaPredicted RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 RALGPS1Q5JS13 557 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 TCHHL1Q5QJ38 904 aaPredicted RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 VSIG10LQ86VR7 867 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 TRAPPC9Q96Q05 1148 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 KLC2Q9H0B6 622 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 MMADHCQ9H3L0 296 aaPredicted RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 SLC25A11Q02978 314 aaKnown RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 NET1Q7Z628 596 aaPredicted RBP15.28■□□□□ 0.04
CCNF-201ENST00000293968 ARFGAP1Q8N6T3 406 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 PPP1R36Q96LQ0 422 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 PLLPQ9Y342 182 aa15.28■□□□□ 0.04
CCNF-201ENST00000293968 TM7SF2O76062 418 aa15.27■□□□□ 0.04
CCNF-201ENST00000293968 RBL1P28749 1068 aa15.27■□□□□ 0.04
CCNF-201ENST00000293968 RGS7P49802 495 aa15.27■□□□□ 0.04
CCNF-201ENST00000293968 TGFB2P61812 414 aa15.27■□□□□ 0.04
CCNF-201ENST00000293968 MED21Q13503 144 aa15.27■□□□□ 0.04
CCNF-201ENST00000293968 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.27■□□□□ 0.04
CCNF-201ENST00000293968 RAB6CQ53S08 254 aa15.27■□□□□ 0.04
CCNF-201ENST00000293968 RSBN1LQ6PCB5 846 aaPredicted RBP15.27■□□□□ 0.04
CCNF-201ENST00000293968 ATXN7L3BQ96GX2 97 aa15.27■□□□□ 0.04
CCNF-201ENST00000293968 RAB6CQ9H0N0 254 aa15.27■□□□□ 0.04
CCNF-201ENST00000293968 MAGED2Q9UNF1 606 aaPredicted RBP15.27■□□□□ 0.04
CCNF-201ENST00000293968 PDGFRAP16234 1089 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 ATXN3P54252 364 aaPredicted RBP15.27■□□□□ 0.03
CCNF-201ENST00000293968 INHBEP58166 350 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 FKBP1AP62942 108 aaKnown RBP15.27■□□□□ 0.03
CCNF-201ENST00000293968 PDE1BQ01064 536 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 CDC16Q13042 620 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 CMPK2Q5EBM0 449 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 DHRS4Q9BTZ2 278 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 RSAD1Q9HA92 442 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 INO80B-WBP1J3KQ70 363 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 EDN1P05305 212 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 MMEL1Q495T6 779 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 TRMT10BQ6PF06 316 aaKnown RBP15.27■□□□□ 0.03
CCNF-201ENST00000293968 GPRASP2Q96D09 838 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 NMD3Q96D46 503 aaKnown RBP15.27■□□□□ 0.03
CCNF-201ENST00000293968 INO80BQ9C086 356 aaPredicted RBP15.27■□□□□ 0.03
CCNF-201ENST00000293968 VCX3BQ9H321 246 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 XAB2Q9HCS7 855 aaKnown RBP15.27■□□□□ 0.03
CCNF-201ENST00000293968 VCX3AQ9NNX9 186 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 ASNSD1Q9NWL6 643 aa15.27■□□□□ 0.03
CCNF-201ENST00000293968 hCG_2014768A0A024R1R8 64 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 PROCP04070 461 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 ERBB2P04626 1255 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 EIF4BP23588 611 aaKnown RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 YWHAZP63104 245 aaKnown RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 ZNF667Q5HYK9 610 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 LRRC71Q8N4P6 559 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 PPP4R1Q8TF05 950 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 GORASP1Q9BQQ3 440 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 SLC17A6Q9P2U8 582 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 MED7O43513 233 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 PLA2G6O60733 806 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 SORBS2O94875 1100 aaKnown RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 RTN3O95197 1032 aaPredicted RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 STIP1P31948 543 aaKnown RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 NAMPTP43490 491 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 RPS6KA3P51812 740 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 CRADDP78560 199 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 EFHC1Q5JVL4 640 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 NLRP4Q96MN2 994 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 ARHGEF4Q9NR80 690 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 C3orf70A6NLC5 250 aaPredicted RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 MAGEC1O60732 1142 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 KCNA2P16389 499 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 FASTKD1Q53R41 847 aaKnown RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 RNF149Q8NC42 400 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 RDM1Q8NG50 284 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 ZNF526Q8TF50 670 aaPredicted RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 PRPF31Q8WWY3 499 aaKnown RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 GATA6Q92908 595 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 ANKRD36BP1Q96IX9 119 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 TXNDC16Q9P2K2 825 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 FETUBQ9UGM5 382 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 CYTH4Q9UIA0 394 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 SOX13Q9UN79 622 aa15.26■□□□□ 0.03
CCNF-201ENST00000293968 HBS1LQ9Y450 684 aaKnown RBP15.26■□□□□ 0.03
CCNF-201ENST00000293968 FOCADQ5VW36 1801 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms