RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 KIRREL3Q8IZU9 778 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 ACTL9Q8TC94 416 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 MRPS31Q92665 395 aaKnown RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 SLC5A5Q92911 643 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 ERLEC1Q96DZ1 483 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 TUT1Q9H6E5 874 aaKnown RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 CD248Q9HCU0 757 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 GIMAP4Q9NUV9 329 aa11.84□□□□□ -0.51
USP53-201ENST00000274030 AAR2Q9Y312 384 aaKnown RBP11.84□□□□□ -0.51
USP53-201ENST00000274030 SPATA31A6Q5VVP1 1343 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 ZSCAN5CA6NGD5 496 aaPredicted RBP11.83□□□□□ -0.52
USP53-201ENST00000274030 INSRRP14616 1297 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 RPL10AP62906 217 aaKnown RBP11.83□□□□□ -0.52
USP53-201ENST00000274030 TMEM132BQ14DG7 1078 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 ELOA2Q8IYF1 753 aaPredicted RBP11.83□□□□□ -0.52
USP53-201ENST00000274030 ADAM32Q8TC27 787 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 PGLYRP2Q96PD5 576 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 RBBP8Q99708 897 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 FAM129AQ9BZQ8 928 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 ENTPD7Q9NQZ7 604 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 DEAF1O75398 565 aaPredicted RBP11.83□□□□□ -0.52
USP53-201ENST00000274030 VPS26AO75436 327 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 ALBP02768 609 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 GLI1P08151 1106 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 ALDH6A1Q02252 535 aaKnown RBP11.83□□□□□ -0.52
USP53-201ENST00000274030 PPATQ06203 517 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 POU6F1Q14863 301 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 KIAA0895Q8NCT3 520 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 ZNF333Q96JL9 665 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 FUT8Q9BYC5 575 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 CNTNAP2Q9UHC6 1331 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 MADDQ8WXG6 1647 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 PROSCO94903 275 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 GUCA1CO95843 209 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 KRT16P08779 473 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 BGNP21810 368 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 PDK2Q15119 407 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 NTRK3Q16288 839 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 PCNX4Q63HM2 1172 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 NT5DC3Q86UY8 548 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 SUGP1Q8IWZ8 645 aaKnown RBP11.83□□□□□ -0.52
USP53-201ENST00000274030 ZNF786Q8N393 782 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 MYCBPAPQ8TBZ2 947 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 DNAJB3Q8WWF6 145 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 CNPY3Q9BT09 278 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 LRRC40Q9H9A6 602 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 CEMIPQ8WUJ3 1361 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 MLNP12872 115 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 CDH8P55286 799 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 RUNX1T1Q06455 604 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 PGS1Q32NB8 556 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 TTC33Q6PID6 262 aaPredicted RBP11.83□□□□□ -0.52
USP53-201ENST00000274030 TMCO5AQ8N6Q1 288 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 OPTNQ96CV9 577 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 GMCL1Q96IK5 515 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 SCN3BQ9NY72 215 aa11.83□□□□□ -0.52
USP53-201ENST00000274030 AP5Z1O43299 807 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 PARNO95453 639 aaKnown RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 ZNF23P17027 643 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 SERPINB3P29508 390 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 GPC1P35052 558 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 STX5Q13190 355 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 UGT3A1Q6NUS8 523 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 SETD3Q86TU7 594 aaPredicted RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 BBS7Q8IWZ6 715 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 C10orf53Q8N6V4 93 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 COLGALT1Q8NBJ5 622 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 PPP1R13LQ8WUF5 828 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 FRMD8Q9BZ67 464 aaPredicted RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 IL17RBQ9NRM6 502 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 DDX43Q9NXZ2 648 aaKnown RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 DCDC2Q9UHG0 476 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 EIF3LQ9Y262 564 aaKnown RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 SNX13Q9Y5W8 968 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 RARGP13631 454 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 SERPINB8P50452 374 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 Q4G0T1 1027 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 MTDHQ86UE4 582 aaKnown RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 B3GALNT2Q8NCR0 500 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 ZMAT2Q96NC0 199 aaKnown RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 YME1L1Q96TA2 773 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 SEMA4AQ9H3S1 761 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 NOD2Q9HC29 1040 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 AK9Q5TCS8 1911 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 GJB6O95452 261 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 CPSF4O95639 269 aaKnown RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 F9P00740 461 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 FGFR2P21802 821 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 RHOAP61586 193 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 CACHD1Q5VU97 1274 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 MTMR8Q96EF0 704 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 ZFP42Q96MM3 310 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 GPAMQ9HCL2 828 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 SMPD4Q9NXE4 827 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 PTPRUQ92729 1446 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 FAM86B1E9PN63 330 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 SMNDC1O75940 238 aaKnown RBP eCLIP11.82□□□□□ -0.52
USP53-201ENST00000274030 DDNO94850 711 aaPredicted RBP11.82□□□□□ -0.52
USP53-201ENST00000274030 RHOCP08134 193 aa11.82□□□□□ -0.52
USP53-201ENST00000274030 FAM86B2P0C5J1 330 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms