RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TOB1P50616 345 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 MRPL28Q13084 256 aaKnown RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 ITGA9Q13797 1035 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 DDX42Q86XP3 938 aaKnown RBP eCLIP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 GPC2Q8N158 579 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.99□□□□□ -0.972e-8■■■□□ 18.3
PTCD3-201ENST00000254630 NSL1Q96IY1 281 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 YIPF3Q9GZM5 350 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 RIOX1Q9H6W3 641 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 FAM47E-STBD1D6RA91 191 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 ZBTB39O15060 712 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 IMPDH2P12268 514 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 KLRC2P26717 231 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 OTUD4Q01804 1114 aaKnown RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 DPP7Q9UHL4 492 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 APPL1Q9UKG1 709 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 SNCAIPQ9Y6H5 919 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 FAM205AQ6ZU69 1335 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 A0A0A6YYK5 440 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 F8VZ95 297 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 MAP3K13O43283 966 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 TRIM16O95361 564 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 CKMP06732 381 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 ITGALP20701 1170 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 AKAP5P24588 427 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 HSD17B3P37058 310 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 NUMBP49757 651 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 MTA1Q13330 715 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 PLCL1Q15111 1095 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 E2F4Q16254 413 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 KBTBD12Q3ZCT8 623 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 LRRC8BQ6P9F7 803 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 CCNJLQ8IV13 435 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 C10orf53Q8N6V4 93 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 ATP8B4Q8TF62 1192 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 ATG4AQ8WYN0 398 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 SMARCD1Q96GM5 515 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 RPS6KB2Q9UBS0 482 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 DDNO94850 711 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 EIF2B5Q13144 721 aaKnown RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 FBXO47Q5MNV8 452 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 LAYNQ6UX15 382 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 BTNL9Q6UXG8 535 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 USP50Q70EL3 339 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 SLC20A1Q8WUM9 679 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 BTN2A2Q8WVV5 523 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 PACSIN1Q9BY11 444 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 CLPBQ9H078 707 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 COL3A1P02461 1466 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 ENDOD1O94919 500 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 GLP2RO95838 553 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 FAM107AO95990 144 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 MPOP05164 745 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 CXCL9Q07325 125 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 SEC23AQ15436 765 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 C2CD6Q53TS8 623 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 NIPA1Q7RTP0 329 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 ZNF410Q86VK4 478 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 EPS8L3Q8TE67 593 aaKnown RBP8.99□□□□□ -0.97
PTCD3-201ENST00000254630 SLC5A5Q92911 643 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 EME1Q96AY2 570 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 ERP27Q96DN0 273 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 CCT8L2Q96SF2 557 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 LRRC40Q9H9A6 602 aa8.99□□□□□ -0.97
PTCD3-201ENST00000254630 CBX4O00257 560 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 TSPAN3O60637 253 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 HOXC6P09630 235 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 CNTFP26441 200 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 ERFP50548 548 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 PREPLQ4J6C6 727 aaPredicted RBP8.98□□□□□ -0.97
PTCD3-201ENST00000254630 OTOAQ7RTW8 1153 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 TRPM8Q7Z2W7 1104 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 GALNT4Q8N4A0 578 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 MAGEB18Q96M61 343 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 BARX2Q9UMQ3 279 aaPredicted RBP8.98□□□□□ -0.97
PTCD3-201ENST00000254630 STAU1O95793 577 aaKnown RBP8.98□□□□□ -0.97
PTCD3-201ENST00000254630 GSNP06396 782 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 MSH3P20585 1137 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 SERPINB5P36952 375 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 BBS7Q8IWZ6 715 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 FAM111AQ96PZ2 611 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 SYT15Q9BQS2 421 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 XPNPEP3Q9NQH7 507 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 RPS6KL1Q9Y6S9 549 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 IFT172Q9UG01 1749 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 NEURL4Q96JN8 1562 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 CXCL11O14625 94 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 TIMM44O43615 452 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 AKR1A1P14550 325 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 INSRRP14616 1297 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 NUDT2P50583 147 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 SKOR1P84550 965 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 CDC16Q13042 620 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 TJAP1Q5JTD0 557 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 C3orf67Q6ZVT6 689 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 IFNEQ86WN2 208 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 TEX9Q8N6V9 391 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 KAT2BQ92831 832 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 FBXO44Q9H4M3 255 aa8.98□□□□□ -0.97
PTCD3-201ENST00000254630 SCN3BQ9NY72 215 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms