RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 SMARCAD1Q9H4L7 1026 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CYP39A1Q9NYL5 469 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 IPO11Q9UI26 975 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 BAG5Q9UL15 447 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ROBO1Q9Y6N7 1651 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PSMG1O95456 288 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 EEF1DP29692 281 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 IREB2P48200 963 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 GTF2BQ00403 316 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PDK1Q15118 436 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PDK4Q16654 411 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 MFSD5Q6N075 450 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 RIPOR1Q6ZS17 1223 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 VSIG10LQ86VR7 867 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 SKA2Q8WVK7 121 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 CAAP1Q9H8G2 361 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 STAP1Q9ULZ2 295 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 A0A1B0GUL6 1792 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 GNGT2O14610 69 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 LGR5O75473 907 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PAPOLAP51003 745 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PTPN11Q06124 597 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 DCAF6Q58WW2 860 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 SPDYCQ5MJ68 293 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 DCAF12L1Q5VU92 463 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 IZUMO2Q6UXV1 221 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 C15orf52Q6ZUT6 534 aaKnown RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ARMCX2Q7L311 632 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ALLCQ8N6M5 410 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 HELQQ8TDG4 1101 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 MECRQ9BV79 373 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ZCWPW1Q9H0M4 648 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PLEKHA5Q9HAU0 1116 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 PRMT7Q9NVM4 692 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-201ENST00000249837 ATXN2Q99700 1313 aaKnown RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 MUTP22033 750 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 NBPF20Q3BBV1 942 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 ZACNQ401N2 412 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 EFHC1Q5JVL4 640 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 BTBD10Q9BSF8 475 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.77□□□□□ -1.659e-8■■■□□ 18.8
VPS13C-201ENST00000249837 GRID1Q9ULK0 1009 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 FZD1Q9UP38 647 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 C2CD2Q9Y426 696 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 CRYBG1Q9Y4K1 1723 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 MICAL2O94851 1124 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 TFE3P19532 575 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 RBL1P28749 1068 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 SLC25A3Q00325 362 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 RNF168Q8IYW5 571 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 VPS39Q96JC1 886 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 ARHGEF38Q9NXL2 777 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 SNED1Q8TER0 1413 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 MAGEB2O15479 319 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 SNHG28P0DPA3 235 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 DSG3P32926 999 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 MLH1P40692 756 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 NIPA1Q7RTP0 329 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 TMEM176AQ96HP8 235 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 FBXO6Q9NRD1 293 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 PDP2Q9P2J9 529 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 EME2A4GXA9 379 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 GSC2O15499 205 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 HMGCRP04035 888 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 SETSIPP0DME0 302 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 FDX1P10109 184 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 AVPR1AP37288 418 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 NAMPTP43490 491 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 COPAP53621 1224 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 LY6KQ17RY6 165 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 KIZQ2M2Z5 673 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 FNBP1LQ5T0N5 605 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 MTHFD1LQ6UB35 978 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 SNRNP27Q8WVK2 155 aaKnown RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 PBXIP1Q96AQ6 731 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 GGA3Q9NZ52 723 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 LACTBL1A8MY62 500 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 KCNK1O00180 336 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 SATB1Q01826 763 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 GCNT1Q02742 428 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 SLC26A11Q86WA9 606 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 DEFB107AQ8IZN7 70 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 CDC26Q8NHZ8 85 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 CYGBQ8WWM9 190 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 GPRASP2Q96D09 838 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 ANKRD27Q96NW4 1050 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 CYP4F12Q9HCS2 524 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 RHBDL2Q9NX52 303 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 CDYLQ9Y232 598 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 TTC36A6NLP5 189 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 SIGLEC16A6NMB1 481 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 ABHD2P08910 425 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 ACAT1P24752 427 aaKnown RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 HADHAP40939 763 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 PTDSS1P48651 473 aaKnown RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 PDAP1Q13442 181 aaKnown RBP4.77□□□□□ -1.65
VPS13C-201ENST00000249837 GLRA4Q5JXX5 417 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 BBS12Q6ZW61 710 aa4.77□□□□□ -1.65
VPS13C-201ENST00000249837 ALYREFQ86V81 257 aaKnown RBP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms