RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 POGKQ9P215 609 aa29.48■■■□□ 2.31
PNKP-220ENST00000627232 NLRP1Q9C000 1473 aa29.48■■■□□ 2.31
PNKP-220ENST00000627232 BCANQ96GW7 911 aa29.47■■■□□ 2.31
PNKP-220ENST00000627232 WDR43Q15061 677 aaKnown RBP eCLIP29.46■■■□□ 2.31
PNKP-220ENST00000627232 ABCC11Q96J66 1382 aa29.46■■■□□ 2.31
PNKP-220ENST00000627232 KNDC1Q76NI1 1749 aa29.46■■■□□ 2.31
PNKP-220ENST00000627232 NSD2O96028 1365 aa29.45■■■□□ 2.31
PNKP-220ENST00000627232 C3P01024 1663 aa29.44■■■□□ 2.3
PNKP-220ENST00000627232 FER1L4A9Z1Z3 1794 aa29.44■■■□□ 2.3
PNKP-220ENST00000627232 CABP2Q9NPB3 220 aa29.44■■■□□ 2.3
PNKP-220ENST00000627232 ADAMTS8Q9UP79 889 aa29.44■■■□□ 2.3
PNKP-220ENST00000627232 CGNL1Q0VF96 1302 aa29.44■■■□□ 2.3
PNKP-220ENST00000627232 SAFB2Q14151 953 aaKnown RBP eCLIP29.43■■■□□ 2.3
PNKP-220ENST00000627232 TMEM2Q9UHN6 1383 aa29.42■■■□□ 2.3
PNKP-220ENST00000627232 RNF123Q5XPI4 1314 aa29.41■■■□□ 2.3
PNKP-220ENST00000627232 SENP3Q9H4L4 574 aaPredicted RBP29.41■■■□□ 2.3
PNKP-220ENST00000627232 POLR3AO14802 1390 aaPredicted RBP29.41■■■□□ 2.3
PNKP-220ENST00000627232 SRPK2P78362 688 aaKnown RBP29.4■■■□□ 2.3
PNKP-220ENST00000627232 MINK1Q8N4C8 1332 aaPredicted RBP29.4■■■□□ 2.3
PNKP-220ENST00000627232 MORC1Q86VD1 984 aa29.39■■■□□ 2.3
PNKP-220ENST00000627232 TRHP20396 242 aaPredicted RBP29.38■■■□□ 2.29
PNKP-220ENST00000627232 TECPR2O15040 1411 aa29.37■■■□□ 2.29
PNKP-220ENST00000627232 SIRT1Q96EB6 747 aa29.36■■■□□ 2.29
PNKP-220ENST00000627232 ANKRD26Q9UPS8 1709 aa29.35■■■□□ 2.29
PNKP-220ENST00000627232 SENP3-EIF4A1A0A087X0R7 540 aa29.35■■■□□ 2.29
PNKP-220ENST00000627232 CPS1P31327 1500 aa29.34■■■□□ 2.29
PNKP-220ENST00000627232 A0A1W2PP64 1363 aa29.34■■■□□ 2.29
PNKP-220ENST00000627232 FAM135BQ49AJ0 1406 aa29.34■■■□□ 2.29
PNKP-220ENST00000627232 IRX6P78412 446 aaPredicted RBP29.33■■■□□ 2.29
PNKP-220ENST00000627232 CDK19Q9BWU1 502 aa29.33■■■□□ 2.29
PNKP-220ENST00000627232 TERF2IPQ9NYB0 399 aa29.33■■■□□ 2.29
PNKP-220ENST00000627232 METP08581 1390 aa29.33■■■□□ 2.29
PNKP-220ENST00000627232 CD163L1Q9NR16 1453 aa29.31■■■□□ 2.28
PNKP-220ENST00000627232 SHPRHQ149N8 1683 aa29.31■■■□□ 2.28
PNKP-220ENST00000627232 MED14O60244 1454 aa29.31■■■□□ 2.28
PNKP-220ENST00000627232 PLEKHG1Q9ULL1 1385 aa29.3■■■□□ 2.28
PNKP-220ENST00000627232 PPP4R2Q9NY27 417 aa29.3■■■□□ 2.28
PNKP-220ENST00000627232 SLIT1O75093 1534 aa29.29■■■□□ 2.28
PNKP-220ENST00000627232 SALL2Q9Y467 1007 aaPredicted RBP29.29■■■□□ 2.28
PNKP-220ENST00000627232 PLEKHH1Q9ULM0 1364 aa29.28■■■□□ 2.28
PNKP-220ENST00000627232 ADAMTS13Q76LX8 1427 aa29.27■■■□□ 2.28
PNKP-220ENST00000627232 ARHGAP23Q9P227 1491 aa29.27■■■□□ 2.28
PNKP-220ENST00000627232 WAPLQ7Z5K2 1190 aa29.26■■■□□ 2.27
PNKP-220ENST00000627232 ATP7BP35670 1465 aa29.26■■■□□ 2.27
PNKP-220ENST00000627232 CEBPAP49715 358 aaPredicted RBP29.25■■■□□ 2.27
PNKP-220ENST00000627232 HDGFL2Q7Z4V5 671 aaPredicted RBP29.25■■■□□ 2.27
PNKP-220ENST00000627232 NGEFQ8N5V2 710 aa29.25■■■□□ 2.27
PNKP-220ENST00000627232 KIF20BQ96Q89 1820 aa29.25■■■□□ 2.27
PNKP-220ENST00000627232 ZNF521Q96K83 1311 aa29.22■■■□□ 2.27
PNKP-220ENST00000627232 CFAP53Q96M91 514 aa29.21■■■□□ 2.27
PNKP-220ENST00000627232 CDCA7LQ96GN5 454 aa29.2■■■□□ 2.27
PNKP-220ENST00000627232 RCAN3Q9UKA8 241 aa29.2■■■□□ 2.27
PNKP-220ENST00000627232 WASLO00401 505 aaPredicted RBP29.2■■■□□ 2.26
PNKP-220ENST00000627232 LTKP29376 864 aa29.19■■■□□ 2.26
PNKP-220ENST00000627232 EID1Q9Y6B2 187 aa29.19■■■□□ 2.26
PNKP-220ENST00000627232 TXNDC2Q86VQ3 553 aa29.18■■■□□ 2.26
PNKP-220ENST00000627232 CABP1Q9NZU7 370 aa29.18■■■□□ 2.26
PNKP-220ENST00000627232 ADGRB2O60241 1585 aa29.18■■■□□ 2.26
PNKP-220ENST00000627232 MTHFSP49914 203 aa29.17■■■□□ 2.26
PNKP-220ENST00000627232 TNNT2P45379 298 aaPredicted RBP29.16■■■□□ 2.26
PNKP-220ENST00000627232 DIP2AQ14689 1571 aa29.15■■■□□ 2.26
PNKP-220ENST00000627232 FYB1O15117 783 aa29.15■■■□□ 2.26
PNKP-220ENST00000627232 CCDC146Q8IYE0 955 aa29.14■■■□□ 2.25
PNKP-220ENST00000627232 THEMISQ8N1K5 641 aaPredicted RBP29.14■■■□□ 2.25
PNKP-220ENST00000627232 RRP1P56182 461 aaKnown RBP29.13■■■□□ 2.25
PNKP-220ENST00000627232 GOLGA2Q08379 1002 aa29.13■■■□□ 2.25
PNKP-220ENST00000627232 CPSF1Q10570 1443 aaKnown RBP29.12■■■□□ 2.25
PNKP-220ENST00000627232 APAF1O14727 1248 aa29.11■■■□□ 2.25
PNKP-220ENST00000627232 CDC42BPGQ6DT37 1551 aa29.11■■■□□ 2.25
PNKP-220ENST00000627232 ROBO2Q9HCK4 1378 aa29.1■■■□□ 2.25
PNKP-220ENST00000627232 RIMS1Q86UR5 1692 aaKnown RBP29.1■■■□□ 2.25
PNKP-220ENST00000627232 PPIP5K1Q6PFW1 1433 aa29.1■■■□□ 2.25
PNKP-220ENST00000627232 AKAP12Q02952 1782 aa29.1■■■□□ 2.25
PNKP-220ENST00000627232 GGNBP2Q9H3C7 697 aa29.1■■■□□ 2.25
PNKP-220ENST00000627232 MON2Q7Z3U7 1717 aa29.09■■■□□ 2.25
PNKP-220ENST00000627232 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.08■■■□□ 2.25
PNKP-220ENST00000627232 TBX22Q9Y458 520 aa29.08■■■□□ 2.25
PNKP-220ENST00000627232 EDC4Q6P2E9 1401 aaKnown RBP29.08■■■□□ 2.25
PNKP-220ENST00000627232 CEP170BQ9Y4F5 1589 aaPredicted RBP29.08■■■□□ 2.25
PNKP-220ENST00000627232 ITSN1Q15811 1721 aa29.08■■■□□ 2.24
PNKP-220ENST00000627232 RUNDC1Q96C34 613 aa29.07■■■□□ 2.24
PNKP-220ENST00000627232 DUSP27Q5VZP5 1158 aa29.06■■■□□ 2.24
PNKP-220ENST00000627232 NUDT16Q96DE0 195 aaKnown RBP29.06■■■□□ 2.24
PNKP-220ENST00000627232 COL3A1P02461 1466 aaPredicted RBP29.06■■■□□ 2.24
PNKP-220ENST00000627232 IQSEC2Q5JU85 1478 aa29.06■■■□□ 2.24
PNKP-220ENST00000627232 SLFN5Q08AF3 891 aa29.05■■■□□ 2.24
PNKP-220ENST00000627232 TRMT2AQ8IZ69 625 aaKnown RBP29.05■■■□□ 2.24
PNKP-220ENST00000627232 PTPRUQ92729 1446 aa29.05■■■□□ 2.24
PNKP-220ENST00000627232 ADAMTSL3P82987 1691 aa29.05■■■□□ 2.24
PNKP-220ENST00000627232 NCBP3Q53F19 620 aaKnown RBP29.04■■■□□ 2.24
PNKP-220ENST00000627232 CCDC61Q9Y6R9 512 aa29.04■■■□□ 2.24
PNKP-220ENST00000627232 TSHZ2Q9NRE2 1034 aa29.04■■■□□ 2.24
PNKP-220ENST00000627232 TOPAZ1Q8N9V7 1692 aa29.03■■■□□ 2.24
PNKP-220ENST00000627232 PTCH1Q13635 1447 aa29.02■■■□□ 2.24
PNKP-220ENST00000627232 ZNF142P52746 1687 aaPredicted RBP29.01■■■□□ 2.24
PNKP-220ENST00000627232 PLPPR3Q6T4P5 718 aa28.99■■■□□ 2.23
PNKP-220ENST00000627232 XRN1Q8IZH2 1706 aaKnown RBP28.99■■■□□ 2.23
PNKP-220ENST00000627232 PNPLA6Q8IY17 1366 aa28.99■■■□□ 2.23
PNKP-220ENST00000627232 E9PSI1 815 aa28.99■■■□□ 2.23
PNKP-220ENST00000627232 SLC26A8Q96RN1 970 aa28.99■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms