RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ST8SIA5O15466 376 aa8.31□□□□□ -1.08
SCN1A-208ENST00000625916 POTECB2RU33 542 aa8.3□□□□□ -1.08
SCN1A-208ENST00000625916 AAASQ9NRG9 546 aa8.3□□□□□ -1.08
SCN1A-208ENST00000625916 USP46P62068 366 aa8.29□□□□□ -1.08
SCN1A-208ENST00000625916 CCDC102AQ96A19 550 aa8.29□□□□□ -1.08
SCN1A-208ENST00000625916 USB1Q9BQ65 265 aaKnown RBP8.29□□□□□ -1.08
SCN1A-208ENST00000625916 TTC24A2A3L6 582 aaPredicted RBP8.28□□□□□ -1.08
SCN1A-208ENST00000625916 MMP16P51512 607 aa8.28□□□□□ -1.08
SCN1A-208ENST00000625916 KRI1Q8N9T8 703 aaKnown RBP8.28□□□□□ -1.08
SCN1A-208ENST00000625916 TOR4AQ9NXH8 423 aa8.28□□□□□ -1.08
SCN1A-208ENST00000625916 HLA-CQ95604 372 aa8.27□□□□□ -1.09
SCN1A-208ENST00000625916 CLCN1P35523 988 aa8.26□□□□□ -1.09
SCN1A-208ENST00000625916 TRIM32Q13049 653 aa8.26□□□□□ -1.09
SCN1A-208ENST00000625916 CCDC24Q8N4L8 307 aa8.26□□□□□ -1.09
SCN1A-208ENST00000625916 GPCPD1Q9NPB8 672 aa8.26□□□□□ -1.09
SCN1A-208ENST00000625916 AXIN1O15169 862 aa8.25□□□□□ -1.09
SCN1A-208ENST00000625916 HOXA2O43364 376 aa8.25□□□□□ -1.09
SCN1A-208ENST00000625916 DXOO77932 396 aaKnown RBP8.24□□□□□ -1.09
SCN1A-208ENST00000625916 AVPP01185 164 aa8.24□□□□□ -1.09
SCN1A-208ENST00000625916 NUTM1Q86Y26 1132 aa8.24□□□□□ -1.09
SCN1A-208ENST00000625916 WNT7AO00755 349 aa8.23□□□□□ -1.09
SCN1A-208ENST00000625916 GUCA2AQ02747 115 aa8.23□□□□□ -1.09
SCN1A-208ENST00000625916 CTC1Q2NKJ3 1217 aa8.23□□□□□ -1.09
SCN1A-208ENST00000625916 CRIPAKQ8N1N5 446 aa8.23□□□□□ -1.09
SCN1A-208ENST00000625916 FAM217BQ9NTX9 383 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-208ENST00000625916 SNIP1Q8TAD8 396 aaKnown RBP8.22□□□□□ -1.09
SCN1A-208ENST00000625916 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.21□□□□□ -1.1
SCN1A-208ENST00000625916 SYMPKQ92797 1274 aaKnown RBP8.21□□□□□ -1.1
SCN1A-208ENST00000625916 DACH1Q9UI36 760 aa8.21□□□□□ -1.1
SCN1A-208ENST00000625916 MRGPRX2Q96LB1 330 aa8.2□□□□□ -1.1
SCN1A-208ENST00000625916 REPIN1Q9BWE0 567 aaKnown RBP8.2□□□□□ -1.1
SCN1A-208ENST00000625916 SMPD1P17405 629 aa8.19□□□□□ -1.1
SCN1A-208ENST00000625916 JUNDP17535 347 aa8.19□□□□□ -1.1
SCN1A-208ENST00000625916 SMCPP49901 116 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-208ENST00000625916 GMPR2Q9P2T1 348 aaKnown RBP8.19□□□□□ -1.1
SCN1A-208ENST00000625916 C11orf95C9JLR9 678 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-208ENST00000625916 RETREG3Q86VR2 466 aa8.18□□□□□ -1.1
SCN1A-208ENST00000625916 C6orf229H3BNL8 230 aa8.17□□□□□ -1.1
SCN1A-208ENST00000625916 J3QL48 77 aa8.17□□□□□ -1.1
SCN1A-208ENST00000625916 FDX1P10109 184 aa8.17□□□□□ -1.1
SCN1A-208ENST00000625916 TTLL12Q14166 644 aaPredicted RBP8.17□□□□□ -1.1
SCN1A-208ENST00000625916 RC3H1Q5TC82 1133 aaKnown RBP8.17□□□□□ -1.1
SCN1A-208ENST00000625916 SSTR3P32745 418 aaPredicted RBP8.16□□□□□ -1.1
SCN1A-208ENST00000625916 WNT7BP56706 349 aa8.16□□□□□ -1.1
SCN1A-208ENST00000625916 SKOR1P84550 965 aa8.16□□□□□ -1.1
SCN1A-208ENST00000625916 NUDT12Q9BQG2 462 aa8.16□□□□□ -1.1
SCN1A-208ENST00000625916 TREML4Q6UXN2 200 aa8.14□□□□□ -1.11
SCN1A-208ENST00000625916 BARGINQ6ZT62 677 aa8.13□□□□□ -1.11
SCN1A-208ENST00000625916 SPIRE2Q8WWL2 714 aa8.13□□□□□ -1.11
SCN1A-208ENST00000625916 HPS1Q92902 700 aa8.13□□□□□ -1.11
SCN1A-208ENST00000625916 ATP13A2Q9NQ11 1180 aa8.13□□□□□ -1.11
SCN1A-208ENST00000625916 PCDHGC3Q9UN70 934 aa8.13□□□□□ -1.11
SCN1A-208ENST00000625916 ALDH1A1P00352 501 aa8.12□□□□□ -1.11
SCN1A-208ENST00000625916 MS4A1P11836 297 aa8.12□□□□□ -1.11
SCN1A-208ENST00000625916 NDUFV2P19404 249 aa8.12□□□□□ -1.11
SCN1A-208ENST00000625916 PTCRAQ6ISU1 281 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-208ENST00000625916 ZMYND10O75800 440 aa8.11□□□□□ -1.11
SCN1A-208ENST00000625916 EHBP1Q8NDI1 1231 aa8.11□□□□□ -1.11
SCN1A-208ENST00000625916 MOXD2PA6NHM9 499 aa8.1□□□□□ -1.11
SCN1A-208ENST00000625916 CCNYL3P0C7X3 344 aa8.1□□□□□ -1.11
SCN1A-208ENST00000625916 GIGYF2Q6Y7W6 1299 aaKnown RBP8.1□□□□□ -1.11
SCN1A-208ENST00000625916 ZC3H15Q8WU90 426 aaKnown RBP8.1□□□□□ -1.11
SCN1A-208ENST00000625916 SENP2Q9HC62 589 aa8.1□□□□□ -1.11
SCN1A-208ENST00000625916 WFS1O76024 890 aa8.09□□□□□ -1.11
SCN1A-208ENST00000625916 AMHR2Q16671 573 aa8.09□□□□□ -1.11
SCN1A-208ENST00000625916 PTPRNQ16849 979 aa8.08□□□□□ -1.12
SCN1A-208ENST00000625916 PRR7Q8TB68 274 aa8.08□□□□□ -1.12
SCN1A-208ENST00000625916 BEGAINQ9BUH8 593 aa8.08□□□□□ -1.12
SCN1A-208ENST00000625916 WASF2Q9Y6W5 498 aa8.08□□□□□ -1.12
SCN1A-208ENST00000625916 SNRPBP14678 240 aaKnown RBP8.07□□□□□ -1.12
SCN1A-208ENST00000625916 MTMR2Q13614 643 aa8.07□□□□□ -1.12
SCN1A-208ENST00000625916 LCE2AQ5TA79 106 aaPredicted RBP8.07□□□□□ -1.12
SCN1A-208ENST00000625916 TRIM47Q96LD4 638 aa8.07□□□□□ -1.12
SCN1A-208ENST00000625916 SPDYE5A6NIY4 337 aa8.06□□□□□ -1.12
SCN1A-208ENST00000625916 SH3BP2P78314 561 aa8.06□□□□□ -1.12
SCN1A-208ENST00000625916 LINC01559Q495D7 138 aa8.06□□□□□ -1.12
SCN1A-208ENST00000625916 KIFC2Q96AC6 838 aa8.06□□□□□ -1.12
SCN1A-208ENST00000625916 UNC93B1Q9H1C4 597 aa8.06□□□□□ -1.12
SCN1A-208ENST00000625916 EVA1BQ9NVM1 165 aa8.06□□□□□ -1.12
SCN1A-208ENST00000625916 SIAH2O43255 324 aa8.05□□□□□ -1.12
SCN1A-208ENST00000625916 TBC1D2Q9BYX2 928 aa8.05□□□□□ -1.12
SCN1A-208ENST00000625916 KCNH2Q12809 1159 aa8.04□□□□□ -1.12
SCN1A-208ENST00000625916 DIXDC1Q155Q3 683 aa8.04□□□□□ -1.12
SCN1A-208ENST00000625916 BAP1Q92560 729 aa8.04□□□□□ -1.12
SCN1A-208ENST00000625916 NFX1Q12986 1120 aaKnown RBP8.03□□□□□ -1.12
SCN1A-208ENST00000625916 DESI1Q6ICB0 168 aa8.03□□□□□ -1.12
SCN1A-208ENST00000625916 CAPN5O15484 640 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-208ENST00000625916 CTHP32929 405 aa8.02□□□□□ -1.13
SCN1A-208ENST00000625916 RSBN1LQ6PCB5 846 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-208ENST00000625916 PARP9Q8IXQ6 854 aa8.02□□□□□ -1.13
SCN1A-208ENST00000625916 TERTO14746 1132 aaKnown RBP8.01□□□□□ -1.13
SCN1A-208ENST00000625916 TRIM66O15016 1216 aa8.01□□□□□ -1.13
SCN1A-208ENST00000625916 GJA5P36382 358 aa8.01□□□□□ -1.13
SCN1A-208ENST00000625916 ZNF511Q8NB15 262 aa8.01□□□□□ -1.13
SCN1A-208ENST00000625916 PLEKHG3A1L390 1219 aa8□□□□□ -1.13
SCN1A-208ENST00000625916 BMP1P13497 986 aa8□□□□□ -1.13
SCN1A-208ENST00000625916 AK7Q96M32 723 aa8□□□□□ -1.13
SCN1A-208ENST00000625916 PCDHB15Q9Y5E8 787 aa8□□□□□ -1.13
SCN1A-208ENST00000625916 TLL2Q9Y6L7 1015 aa8□□□□□ -1.13
SCN1A-208ENST00000625916 VARSP26640 1264 aaKnown RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms