RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 PDE3BQ13370 1112 aa21.9■■□□□ 1.1
LDB3-208ENST00000623007 SUPT16HQ9Y5B9 1047 aaKnown RBP21.89■■□□□ 1.1
LDB3-208ENST00000623007 FAM135BQ49AJ0 1406 aa21.89■■□□□ 1.09
LDB3-208ENST00000623007 SMG6Q86US8 1419 aaKnown RBP21.89■■□□□ 1.09
LDB3-208ENST00000623007 CGNL1Q0VF96 1302 aa21.89■■□□□ 1.09
LDB3-208ENST00000623007 NRXN3Q9Y4C0 1643 aa21.88■■□□□ 1.09
LDB3-208ENST00000623007 TECPR2O15040 1411 aa21.88■■□□□ 1.09
LDB3-208ENST00000623007 BLMP54132 1417 aaPredicted RBP21.88■■□□□ 1.09
LDB3-208ENST00000623007 PRAM1Q96QH2 718 aa21.87■■□□□ 1.09
LDB3-208ENST00000623007 STK26Q9P289 416 aa21.87■■□□□ 1.09
LDB3-208ENST00000623007 NSD3Q9BZ95 1437 aa21.86■■□□□ 1.09
LDB3-208ENST00000623007 PLEKHG1Q9ULL1 1385 aa21.86■■□□□ 1.09
LDB3-208ENST00000623007 SLIT1O75093 1534 aa21.85■■□□□ 1.09
LDB3-208ENST00000623007 TERF2IPQ9NYB0 399 aa21.85■■□□□ 1.09
LDB3-208ENST00000623007 EID1Q9Y6B2 187 aa21.85■■□□□ 1.09
LDB3-208ENST00000623007 WDR43Q15061 677 aaKnown RBP eCLIP21.85■■□□□ 1.09
LDB3-208ENST00000623007 CARD14Q9BXL6 1004 aa21.85■■□□□ 1.09
LDB3-208ENST00000623007 SRPK2P78362 688 aaKnown RBP21.84■■□□□ 1.09
LDB3-208ENST00000623007 NGEFQ8N5V2 710 aa21.84■■□□□ 1.09
LDB3-208ENST00000623007 CPS1P31327 1500 aa21.83■■□□□ 1.08
LDB3-208ENST00000623007 SLC12A5Q9H2X9 1139 aa21.82■■□□□ 1.08
LDB3-208ENST00000623007 NUDCQ9Y266 331 aa21.82■■□□□ 1.08
LDB3-208ENST00000623007 ARHGAP23Q9P227 1491 aa21.82■■□□□ 1.08
LDB3-208ENST00000623007 THEMISQ8N1K5 641 aaPredicted RBP21.82■■□□□ 1.08
LDB3-208ENST00000623007 POLR3AO14802 1390 aaPredicted RBP21.81■■□□□ 1.08
LDB3-208ENST00000623007 DIP2AQ14689 1571 aa21.81■■□□□ 1.08
LDB3-208ENST00000623007 MED14O60244 1454 aa21.81■■□□□ 1.08
LDB3-208ENST00000623007 MORC1Q86VD1 984 aa21.79■■□□□ 1.08
LDB3-208ENST00000623007 FKBP8Q14318 412 aa21.79■■□□□ 1.08
LDB3-208ENST00000623007 HDGFL2Q7Z4V5 671 aaPredicted RBP21.79■■□□□ 1.08
LDB3-208ENST00000623007 ATP7BP35670 1465 aa21.78■■□□□ 1.08
LDB3-208ENST00000623007 CABP2Q9NPB3 220 aa21.78■■□□□ 1.08
LDB3-208ENST00000623007 MINK1Q8N4C8 1332 aaPredicted RBP21.77■■□□□ 1.08
LDB3-208ENST00000623007 CDK19Q9BWU1 502 aa21.75■■□□□ 1.07
LDB3-208ENST00000623007 SAFB2Q14151 953 aaKnown RBP eCLIP21.75■■□□□ 1.07
LDB3-208ENST00000623007 BCANQ96GW7 911 aa21.75■■□□□ 1.07
LDB3-208ENST00000623007 METP08581 1390 aa21.75■■□□□ 1.07
LDB3-208ENST00000623007 ADAMTS13Q76LX8 1427 aa21.74■■□□□ 1.07
LDB3-208ENST00000623007 TXNDC2Q86VQ3 553 aa21.74■■□□□ 1.07
LDB3-208ENST00000623007 CFAP53Q96M91 514 aa21.74■■□□□ 1.07
LDB3-208ENST00000623007 ANKRD26Q9UPS8 1709 aa21.73■■□□□ 1.07
LDB3-208ENST00000623007 A0A1W2PP64 1363 aa21.73■■□□□ 1.07
LDB3-208ENST00000623007 TBX22Q9Y458 520 aa21.72■■□□□ 1.07
LDB3-208ENST00000623007 ADGRB2O60241 1585 aa21.72■■□□□ 1.07
LDB3-208ENST00000623007 WASLO00401 505 aaPredicted RBP21.7■■□□□ 1.06
LDB3-208ENST00000623007 ADAMTS8Q9UP79 889 aa21.7■■□□□ 1.06
LDB3-208ENST00000623007 CEBPAP49715 358 aaPredicted RBP21.69■■□□□ 1.06
LDB3-208ENST00000623007 CEP170BQ9Y4F5 1589 aaPredicted RBP21.69■■□□□ 1.06
LDB3-208ENST00000623007 PIK3R4Q99570 1358 aa21.69■■□□□ 1.06
LDB3-208ENST00000623007 ADAMTSL3P82987 1691 aa21.68■■□□□ 1.06
LDB3-208ENST00000623007 KDM4FA0A1W2PPD8 638 aa21.67■■□□□ 1.06
LDB3-208ENST00000623007 ZNF142P52746 1687 aaPredicted RBP21.67■■□□□ 1.06
LDB3-208ENST00000623007 RIMS1Q86UR5 1692 aaKnown RBP21.67■■□□□ 1.06
LDB3-208ENST00000623007 CD163L1Q9NR16 1453 aa21.67■■□□□ 1.06
LDB3-208ENST00000623007 PTCH1Q13635 1447 aa21.66■■□□□ 1.06
LDB3-208ENST00000623007 LTKP29376 864 aa21.66■■□□□ 1.06
LDB3-208ENST00000623007 NCBP3Q53F19 620 aaKnown RBP21.66■■□□□ 1.06
LDB3-208ENST00000623007 WAPLQ7Z5K2 1190 aa21.66■■□□□ 1.06
LDB3-208ENST00000623007 RNF123Q5XPI4 1314 aa21.65■■□□□ 1.06
LDB3-208ENST00000623007 KIF20BQ96Q89 1820 aa21.64■■□□□ 1.06
LDB3-208ENST00000623007 PLEKHH1Q9ULM0 1364 aa21.64■■□□□ 1.05
LDB3-208ENST00000623007 SETD1BQ9UPS6 1966 aaKnown RBP21.64■■□□□ 1.05
LDB3-208ENST00000623007 ZNF692Q9BU19 519 aaPredicted RBP21.63■■□□□ 1.05
LDB3-208ENST00000623007 CCDC61Q9Y6R9 512 aa21.63■■□□□ 1.05
LDB3-208ENST00000623007 EDC4Q6P2E9 1401 aaKnown RBP21.63■■□□□ 1.05
LDB3-208ENST00000623007 CABP1Q9NZU7 370 aa21.63■■□□□ 1.05
LDB3-208ENST00000623007 CPSF1Q10570 1443 aaKnown RBP21.62■■□□□ 1.05
LDB3-208ENST00000623007 CDC42BPGQ6DT37 1551 aa21.61■■□□□ 1.05
LDB3-208ENST00000623007 PPIP5K1Q6PFW1 1433 aa21.61■■□□□ 1.05
LDB3-208ENST00000623007 SENP3Q9H4L4 574 aaPredicted RBP21.6■■□□□ 1.05
LDB3-208ENST00000623007 ROBO2Q9HCK4 1378 aa21.58■■□□□ 1.05
LDB3-208ENST00000623007 SHPRHQ149N8 1683 aa21.58■■□□□ 1.05
LDB3-208ENST00000623007 FYB1O15117 783 aa21.58■■□□□ 1.05
LDB3-208ENST00000623007 MTHFSP49914 203 aa21.58■■□□□ 1.05
LDB3-208ENST00000623007 NUDT16Q96DE0 195 aaKnown RBP21.58■■□□□ 1.05
LDB3-208ENST00000623007 PNNQ9H307 717 aaKnown RBP21.57■■□□□ 1.04
LDB3-208ENST00000623007 PPP4R2Q9NY27 417 aa21.57■■□□□ 1.04
LDB3-208ENST00000623007 ITSN1Q15811 1721 aa21.57■■□□□ 1.04
LDB3-208ENST00000623007 MON2Q7Z3U7 1717 aa21.57■■□□□ 1.04
LDB3-208ENST00000623007 ANKLE2Q86XL3 938 aa21.56■■□□□ 1.04
LDB3-208ENST00000623007 XRN1Q8IZH2 1706 aaKnown RBP21.55■■□□□ 1.04
LDB3-208ENST00000623007 AKAP12Q02952 1782 aa21.55■■□□□ 1.04
LDB3-208ENST00000623007 GOLGA2Q08379 1002 aa21.55■■□□□ 1.04
LDB3-208ENST00000623007 RUNDC1Q96C34 613 aa21.55■■□□□ 1.04
LDB3-208ENST00000623007 ZNF521Q96K83 1311 aa21.55■■□□□ 1.04
LDB3-208ENST00000623007 RCAN3Q9UKA8 241 aa21.54■■□□□ 1.04
LDB3-208ENST00000623007 AMOTL2Q9Y2J4 779 aa21.54■■□□□ 1.04
LDB3-208ENST00000623007 TOPAZ1Q8N9V7 1692 aa21.54■■□□□ 1.04
LDB3-208ENST00000623007 PTPRUQ92729 1446 aa21.52■■□□□ 1.04
LDB3-208ENST00000623007 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.52■■□□□ 1.04
LDB3-208ENST00000623007 SLC26A8Q96RN1 970 aa21.52■■□□□ 1.04
LDB3-208ENST00000623007 PLEKHG3A1L390 1219 aa21.51■■□□□ 1.03
LDB3-208ENST00000623007 GGNBP2Q9H3C7 697 aa21.51■■□□□ 1.03
LDB3-208ENST00000623007 AATKQ6ZMQ8 1374 aa21.51■■□□□ 1.03
LDB3-208ENST00000623007 TNNT2P45379 298 aaPredicted RBP21.5■■□□□ 1.03
LDB3-208ENST00000623007 PNPLA6Q8IY17 1366 aa21.5■■□□□ 1.03
LDB3-208ENST00000623007 E9PSI1 815 aa21.49■■□□□ 1.03
LDB3-208ENST00000623007 CCDC27Q2M243 656 aa21.49■■□□□ 1.03
LDB3-208ENST00000623007 SALL2Q9Y467 1007 aaPredicted RBP21.49■■□□□ 1.03
LDB3-208ENST00000623007 ANKARQ7Z5J8 1434 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms