RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MYO3AQ8NEV4 1616 aa14.03□□□□□ -0.16
CUX1-221ENST00000622516 C20orf194Q5TEA3 1177 aa14.02□□□□□ -0.16
CUX1-221ENST00000622516 DMRT2Q9Y5R5 561 aa14.02□□□□□ -0.16
CUX1-221ENST00000622516 PREX1Q8TCU6 1659 aa14.02□□□□□ -0.16
CUX1-221ENST00000622516 RRP7AQ9Y3A4 280 aaKnown RBP14.02□□□□□ -0.17
CUX1-221ENST00000622516 ZMYM4Q5VZL5 1548 aa14.02□□□□□ -0.17
CUX1-221ENST00000622516 MTHFSP49914 203 aa14.01□□□□□ -0.17
CUX1-221ENST00000622516 GOLGA2Q08379 1002 aa14.01□□□□□ -0.17
CUX1-221ENST00000622516 DUSP27Q5VZP5 1158 aa14.01□□□□□ -0.17
CUX1-221ENST00000622516 PLPPR3Q6T4P5 718 aa14.01□□□□□ -0.17
CUX1-221ENST00000622516 WAPLQ7Z5K2 1190 aa14.01□□□□□ -0.17
CUX1-221ENST00000622516 GGNBP2Q9H3C7 697 aa14□□□□□ -0.17
CUX1-221ENST00000622516 TULP4Q9NRJ4 1543 aa14□□□□□ -0.17
CUX1-221ENST00000622516 TMEM131LA2VDJ0 1609 aa14□□□□□ -0.17
CUX1-221ENST00000622516 CRBNQ96SW2 442 aa13.99□□□□□ -0.17
CUX1-221ENST00000622516 CGNL1Q0VF96 1302 aa13.99□□□□□ -0.17
CUX1-221ENST00000622516 ZC3H13Q5T200 1668 aaKnown RBP13.99□□□□□ -0.17
CUX1-221ENST00000622516 ZNF521Q96K83 1311 aa13.99□□□□□ -0.17
CUX1-221ENST00000622516 ESF1Q9H501 851 aaKnown RBP13.98□□□□□ -0.17
CUX1-221ENST00000622516 ARHGEF28Q8N1W1 1705 aaKnown RBP13.98□□□□□ -0.17
CUX1-221ENST00000622516 INSRP06213 1382 aa13.98□□□□□ -0.17
CUX1-221ENST00000622516 SKAP1Q86WV1 359 aa13.98□□□□□ -0.17
CUX1-221ENST00000622516 ANP32EQ9BTT0 268 aa13.98□□□□□ -0.17
CUX1-221ENST00000622516 CLTCQ00610 1675 aaKnown RBP13.97□□□□□ -0.17
CUX1-221ENST00000622516 SLFN5Q08AF3 891 aa13.97□□□□□ -0.17
CUX1-221ENST00000622516 YTHDC2Q9H6S0 1430 aaKnown RBP13.96□□□□□ -0.17
CUX1-221ENST00000622516 MSH5O43196 834 aa13.96□□□□□ -0.17
CUX1-221ENST00000622516 CDK19Q9BWU1 502 aa13.96□□□□□ -0.17
CUX1-221ENST00000622516 A0A1W2PP64 1363 aa13.96□□□□□ -0.18
CUX1-221ENST00000622516 FBLN1P23142 703 aa13.95□□□□□ -0.18
CUX1-221ENST00000622516 CABP1Q9NZU7 370 aa13.95□□□□□ -0.18
CUX1-221ENST00000622516 ZFYVE9O95405 1425 aa13.95□□□□□ -0.18
CUX1-221ENST00000622516 ANKRD36BQ8N2N9 1353 aa13.94□□□□□ -0.18
CUX1-221ENST00000622516 BCAR3O75815 825 aa13.94□□□□□ -0.18
CUX1-221ENST00000622516 POLR3AO14802 1390 aaPredicted RBP13.94□□□□□ -0.18
CUX1-221ENST00000622516 PTPRMP28827 1452 aa13.93□□□□□ -0.18
CUX1-221ENST00000622516 U2AF1L5P0DN76 240 aaPredicted RBP13.93□□□□□ -0.18
CUX1-221ENST00000622516 U2AF1Q01081 240 aaKnown RBP eCLIP13.93□□□□□ -0.185e-6■□□□□ 11.2
CUX1-221ENST00000622516 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.93□□□□□ -0.183e-6■□□□□ 10.3
CUX1-221ENST00000622516 TCP11L2Q8N4U5 519 aa13.93□□□□□ -0.18
CUX1-221ENST00000622516 WWC1Q8IX03 1113 aa13.92□□□□□ -0.18
CUX1-221ENST00000622516 ZMYM3Q14202 1370 aa13.92□□□□□ -0.18
CUX1-221ENST00000622516 TXNDC2Q86VQ3 553 aa13.92□□□□□ -0.18
CUX1-221ENST00000622516 ALKQ9UM73 1620 aa13.92□□□□□ -0.18
CUX1-221ENST00000622516 CEBPAP49715 358 aaPredicted RBP13.92□□□□□ -0.18
CUX1-221ENST00000622516 A2ML1A8K2U0 1454 aa13.91□□□□□ -0.18
CUX1-221ENST00000622516 RIMS2Q9UQ26 1411 aa13.91□□□□□ -0.18
CUX1-221ENST00000622516 U2SURPO15042 1029 aaKnown RBP13.91□□□□□ -0.18
CUX1-221ENST00000622516 FYB1O15117 783 aa13.91□□□□□ -0.18
CUX1-221ENST00000622516 NCKAP5LQ9HCH0 1330 aa13.91□□□□□ -0.18
CUX1-221ENST00000622516 CFAP53Q96M91 514 aa13.9□□□□□ -0.18
CUX1-221ENST00000622516 KIF13AQ9H1H9 1805 aa13.9□□□□□ -0.18
CUX1-221ENST00000622516 PPM1GO15355 546 aaPredicted RBP13.9□□□□□ -0.18
CUX1-221ENST00000622516 TRMT2AQ8IZ69 625 aaKnown RBP13.9□□□□□ -0.18
CUX1-221ENST00000622516 PPP6R1Q9UPN7 881 aa13.9□□□□□ -0.18
CUX1-221ENST00000622516 RUNDC1Q96C34 613 aa13.89□□□□□ -0.19
CUX1-221ENST00000622516 TERF2IPQ9NYB0 399 aa13.89□□□□□ -0.19
CUX1-221ENST00000622516 PUS7Q96PZ0 661 aaKnown RBP13.89□□□□□ -0.19
CUX1-221ENST00000622516 E9PSI1 815 aa13.89□□□□□ -0.19
CUX1-221ENST00000622516 AGLP35573 1532 aa13.88□□□□□ -0.19
CUX1-221ENST00000622516 METP08581 1390 aa13.88□□□□□ -0.19
CUX1-221ENST00000622516 NUTM2FA1L443 756 aa13.87□□□□□ -0.19
CUX1-221ENST00000622516 HDGFL2Q7Z4V5 671 aaPredicted RBP13.87□□□□□ -0.19
CUX1-221ENST00000622516 ATAD2Q6PL18 1390 aa13.87□□□□□ -0.19
CUX1-221ENST00000622516 ABCC11Q96J66 1382 aa13.87□□□□□ -0.19
CUX1-221ENST00000622516 BCL2L13Q9BXK5 485 aa13.86□□□□□ -0.19
CUX1-221ENST00000622516 SHPRHQ149N8 1683 aa13.86□□□□□ -0.19
CUX1-221ENST00000622516 FANCIQ9NVI1 1328 aa13.86□□□□□ -0.19
CUX1-221ENST00000622516 NKTRP30414 1462 aaKnown RBP13.86□□□□□ -0.19
CUX1-221ENST00000622516 CD163L1Q9NR16 1453 aa13.86□□□□□ -0.19
CUX1-221ENST00000622516 FRAT1Q92837 279 aaPredicted RBP13.85□□□□□ -0.19
CUX1-221ENST00000622516 SPATA31D1Q6ZQQ2 1576 aa13.85□□□□□ -0.19
CUX1-221ENST00000622516 ZRANB1Q9UGI0 708 aa13.85□□□□□ -0.19
CUX1-221ENST00000622516 REREQ9P2R6 1566 aa13.84□□□□□ -0.19
CUX1-221ENST00000622516 ARHGEF40Q8TER5 1519 aa13.83□□□□□ -0.19
CUX1-221ENST00000622516 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.83□□□□□ -0.2
CUX1-221ENST00000622516 EIF5BO60841 1220 aaKnown RBP13.83□□□□□ -0.2
CUX1-221ENST00000622516 CANXP27824 592 aaKnown RBP13.83□□□□□ -0.2
CUX1-221ENST00000622516 NPM2Q86SE8 214 aaKnown RBP13.83□□□□□ -0.2
CUX1-221ENST00000622516 NSD2O96028 1365 aa13.82□□□□□ -0.2
CUX1-221ENST00000622516 PANK1Q8TE04 598 aa13.82□□□□□ -0.2
CUX1-221ENST00000622516 SLC26A8Q96RN1 970 aa13.82□□□□□ -0.2
CUX1-221ENST00000622516 TNRQ92752 1358 aa13.81□□□□□ -0.2
CUX1-221ENST00000622516 WASLO00401 505 aaPredicted RBP13.81□□□□□ -0.2
CUX1-221ENST00000622516 TSR2Q969E8 191 aaKnown RBP13.81□□□□□ -0.2
CUX1-221ENST00000622516 TNNQ9UQP3 1299 aa13.81□□□□□ -0.2
CUX1-221ENST00000622516 LTKP29376 864 aa13.81□□□□□ -0.2
CUX1-221ENST00000622516 NME9Q86XW9 330 aa13.81□□□□□ -0.2
CUX1-221ENST00000622516 USP32Q8NFA0 1604 aa13.81□□□□□ -0.2
CUX1-221ENST00000622516 NINLQ9Y2I6 1382 aa13.81□□□□□ -0.2
CUX1-221ENST00000622516 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.8□□□□□ -0.2
CUX1-221ENST00000622516 COG6Q9Y2V7 657 aa13.8□□□□□ -0.2
CUX1-221ENST00000622516 TRHP20396 242 aaPredicted RBP13.8□□□□□ -0.2
CUX1-221ENST00000622516 NUDT16Q96DE0 195 aaKnown RBP13.8□□□□□ -0.2
CUX1-221ENST00000622516 CLUAP1Q96AJ1 413 aa13.79□□□□□ -0.2
CUX1-221ENST00000622516 DIAPH1O60610 1272 aaKnown RBP13.79□□□□□ -0.2
CUX1-221ENST00000622516 NLRP1Q9C000 1473 aa13.78□□□□□ -0.2
CUX1-221ENST00000622516 PLEKHF1Q96S99 279 aa13.78□□□□□ -0.2
CUX1-221ENST00000622516 PHF23Q9BUL5 403 aaPredicted RBP13.78□□□□□ -0.2
CUX1-221ENST00000622516 EMILIN1Q9Y6C2 1016 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms