RNA–Protein interactions for RNA: ENST00000615843.4

SPAST-203, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-203ENST00000615843 MCM2P49736 904 aa22.75■■□□□ 1.23
SPAST-203ENST00000615843 NAT10Q9H0A0 1025 aaKnown RBP22.75■■□□□ 1.23
SPAST-203ENST00000615843 CUX1P39880 1505 aa22.75■■□□□ 1.23
SPAST-203ENST00000615843 TCP11L2Q8N4U5 519 aa22.74■■□□□ 1.23
SPAST-203ENST00000615843 FKBP5Q13451 457 aaPredicted RBP22.74■■□□□ 1.23
SPAST-203ENST00000615843 SYNE3Q6ZMZ3 975 aa22.74■■□□□ 1.23
SPAST-203ENST00000615843 PATL2C9JE40 543 aaKnown RBP22.73■■□□□ 1.23
SPAST-203ENST00000615843 K7ELQ4 463 aaPredicted RBP22.73■■□□□ 1.23
SPAST-203ENST00000615843 PDS5BQ9NTI5 1447 aa22.73■■□□□ 1.23
SPAST-203ENST00000615843 CCDC27Q2M243 656 aa22.73■■□□□ 1.23
SPAST-203ENST00000615843 CWC22Q9HCG8 908 aaKnown RBP22.72■■□□□ 1.23
SPAST-203ENST00000615843 PODXL2Q9NZ53 605 aa22.72■■□□□ 1.23
SPAST-203ENST00000615843 LRRFIP1Q32MZ4 808 aaKnown RBP22.72■■□□□ 1.23
SPAST-203ENST00000615843 PCMTD1Q96MG8 357 aaPredicted RBP22.72■■□□□ 1.23
SPAST-203ENST00000615843 AK7Q96M32 723 aa22.72■■□□□ 1.23
SPAST-203ENST00000615843 CIZ1Q9ULV3 898 aaPredicted RBP22.72■■□□□ 1.23
SPAST-203ENST00000615843 VGFO15240 615 aaPredicted RBP22.71■■□□□ 1.23
SPAST-203ENST00000615843 RUFY1Q96T51 708 aa22.71■■□□□ 1.23
SPAST-203ENST00000615843 NUTM2FA1L443 756 aa22.7■■□□□ 1.23
SPAST-203ENST00000615843 ERC2O15083 957 aa22.7■■□□□ 1.23
SPAST-203ENST00000615843 ZSCAN30Q86W11 494 aa22.7■■□□□ 1.23
SPAST-203ENST00000615843 MINK1Q8N4C8 1332 aaPredicted RBP22.7■■□□□ 1.22
SPAST-203ENST00000615843 EIF2S2P20042 333 aaKnown RBP22.7■■□□□ 1.22
SPAST-203ENST00000615843 NECTIN2Q92692 538 aa22.7■■□□□ 1.22
SPAST-203ENST00000615843 FOSBP53539 338 aa22.7■■□□□ 1.22
SPAST-203ENST00000615843 SPC24Q8NBT2 197 aa22.7■■□□□ 1.22
SPAST-203ENST00000615843 MARCH6O60337 910 aa22.7■■□□□ 1.22
SPAST-203ENST00000615843 HSP90AB4PQ58FF6 505 aa22.69■■□□□ 1.22
SPAST-203ENST00000615843 GCC1Q96CN9 775 aa22.69■■□□□ 1.22
SPAST-203ENST00000615843 SDF4Q9BRK5 362 aa22.69■■□□□ 1.22
SPAST-203ENST00000615843 NINLQ9Y2I6 1382 aa22.69■■□□□ 1.22
SPAST-203ENST00000615843 NCBP3Q53F19 620 aaKnown RBP22.69■■□□□ 1.22
SPAST-203ENST00000615843 CADPSQ9ULU8 1353 aa22.69■■□□□ 1.22
SPAST-203ENST00000615843 FIBPO43427 364 aa22.68■■□□□ 1.22
SPAST-203ENST00000615843 NEXNQ0ZGT2 675 aa22.67■■□□□ 1.22
SPAST-203ENST00000615843 MPNDQ8N594 471 aa22.67■■□□□ 1.22
SPAST-203ENST00000615843 G3BP1Q13283 466 aaKnown RBP eCLIP22.67■■□□□ 1.22
SPAST-203ENST00000615843 TEFQ10587 303 aa22.67■■□□□ 1.22
SPAST-203ENST00000615843 WDR97A6NE52 1622 aa22.67■■□□□ 1.22
SPAST-203ENST00000615843 EXOSC9Q06265 439 aaKnown RBP22.66■■□□□ 1.22
SPAST-203ENST00000615843 ZNF644Q9H582 1327 aaPredicted RBP22.66■■□□□ 1.22
SPAST-203ENST00000615843 CCDC112Q8NEF3 446 aa22.65■■□□□ 1.22
SPAST-203ENST00000615843 NBPF8Q3BBV2 869 aa22.65■■□□□ 1.22
SPAST-203ENST00000615843 PDILTQ8N807 584 aa22.65■■□□□ 1.22
SPAST-203ENST00000615843 MTHFSP49914 203 aa22.64■■□□□ 1.22
SPAST-203ENST00000615843 HMOX1P09601 288 aa22.64■■□□□ 1.21
SPAST-203ENST00000615843 OLFM4Q6UX06 510 aa22.64■■□□□ 1.21
SPAST-203ENST00000615843 STAC3Q96MF2 364 aa22.64■■□□□ 1.21
SPAST-203ENST00000615843 IGF1RP08069 1367 aa22.63■■□□□ 1.21
SPAST-203ENST00000615843 PSMA5P28066 241 aa22.63■■□□□ 1.21
SPAST-203ENST00000615843 ERCC4Q92889 916 aaPredicted RBP22.63■■□□□ 1.21
SPAST-203ENST00000615843 CCDC47Q96A33 483 aaKnown RBP22.63■■□□□ 1.21
SPAST-203ENST00000615843 TRDNQ13061 729 aa22.63■■□□□ 1.21
SPAST-203ENST00000615843 SMARCA4P51532 1647 aa22.62■■□□□ 1.21
SPAST-203ENST00000615843 CCDC192P0DO97 292 aa22.62■■□□□ 1.21
SPAST-203ENST00000615843 KINO60870 393 aaKnown RBP22.62■■□□□ 1.21
SPAST-203ENST00000615843 SMC2O95347 1197 aa22.62■■□□□ 1.21
SPAST-203ENST00000615843 PDCP20941 246 aa22.62■■□□□ 1.21
SPAST-203ENST00000615843 JPH4Q96JJ6 628 aa22.62■■□□□ 1.21
SPAST-203ENST00000615843 CCP110O43303 1012 aa22.62■■□□□ 1.21
SPAST-203ENST00000615843 C1orf115Q9H7X2 142 aa22.62■■□□□ 1.21
SPAST-203ENST00000615843 NCOA2Q15596 1464 aa22.61■■□□□ 1.21
SPAST-203ENST00000615843 H0YHG0 523 aa22.61■■□□□ 1.21
SPAST-203ENST00000615843 TSPYL4Q9UJ04 414 aa22.61■■□□□ 1.21
SPAST-203ENST00000615843 CDR1P51861 262 aa22.61■■□□□ 1.21
SPAST-203ENST00000615843 C1orf141Q5JVX7 400 aa22.61■■□□□ 1.21
SPAST-203ENST00000615843 CNTROBQ8N137 903 aa22.61■■□□□ 1.21
SPAST-203ENST00000615843 LEKR1Q6ZMV7 388 aa22.61■■□□□ 1.21
SPAST-203ENST00000615843 ANKRD50Q9ULJ7 1429 aa22.6■■□□□ 1.21
SPAST-203ENST00000615843 NOB1Q9ULX3 412 aaKnown RBP22.6■■□□□ 1.21
SPAST-203ENST00000615843 GGNBP2Q9H3C7 697 aa22.6■■□□□ 1.21
SPAST-203ENST00000615843 WDR33Q9C0J8 1336 aaKnown RBP22.6■■□□□ 1.21
SPAST-203ENST00000615843 APPP05067 770 aa22.59■■□□□ 1.21
SPAST-203ENST00000615843 MVPQ14764 893 aaKnown RBP22.59■■□□□ 1.21
SPAST-203ENST00000615843 ARAP1Q96P48 1450 aa22.58■■□□□ 1.21
SPAST-203ENST00000615843 ATAD2BQ9ULI0 1458 aa22.58■■□□□ 1.21
SPAST-203ENST00000615843 UBTFL1P0CB47 393 aaPredicted RBP22.58■■□□□ 1.21
SPAST-203ENST00000615843 FYCO1Q9BQS8 1478 aa22.58■■□□□ 1.21
SPAST-203ENST00000615843 NFXL1Q6ZNB6 911 aa22.57■■□□□ 1.2
SPAST-203ENST00000615843 SAFBQ15424 915 aaKnown RBP eCLIP22.57■■□□□ 1.2
SPAST-203ENST00000615843 UBE2Q2Q8WVN8 375 aa22.57■■□□□ 1.2
SPAST-203ENST00000615843 FMNL2Q96PY5 1086 aa22.57■■□□□ 1.2
SPAST-203ENST00000615843 DDX58O95786 925 aaKnown RBP22.56■■□□□ 1.2
SPAST-203ENST00000615843 PDCL2Q8N4E4 241 aa22.56■■□□□ 1.2
SPAST-203ENST00000615843 CASKIN1Q8WXD9 1431 aa22.56■■□□□ 1.2
SPAST-203ENST00000615843 TSR2Q969E8 191 aaKnown RBP22.56■■□□□ 1.2
SPAST-203ENST00000615843 VPS53Q5VIR6 699 aa22.55■■□□□ 1.2
SPAST-203ENST00000615843 CHD1LQ86WJ1 897 aa22.55■■□□□ 1.2
SPAST-203ENST00000615843 PDCL3Q9H2J4 239 aa22.55■■□□□ 1.2
SPAST-203ENST00000615843 GNAI3P08754 354 aa22.54■■□□□ 1.2
SPAST-203ENST00000615843 CAGE1Q8TC20 777 aa22.54■■□□□ 1.2
SPAST-203ENST00000615843 SKAP1Q86WV1 359 aa22.54■■□□□ 1.2
SPAST-203ENST00000615843 NAP1L1P55209 391 aaKnown RBP22.54■■□□□ 1.2
SPAST-203ENST00000615843 RDXP35241 583 aaKnown RBP22.53■■□□□ 1.2
SPAST-203ENST00000615843 TNMDQ9H2S6 317 aa22.53■■□□□ 1.2
SPAST-203ENST00000615843 ATF7IPQ6VMQ6 1270 aa22.53■■□□□ 1.2
SPAST-203ENST00000615843 TTLL5Q6EMB2 1281 aa22.53■■□□□ 1.2
SPAST-203ENST00000615843 EID1Q9Y6B2 187 aa22.53■■□□□ 1.2
SPAST-203ENST00000615843 RALYLQ86SE5 291 aaKnown RBP22.53■■□□□ 1.2
SPAST-203ENST00000615843 CT47B1P0C2W7 299 aaPredicted RBP22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms