RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MSS51Q4VC12 460 aa9.81□□□□□ -0.84
LINC00540-201ENST00000611481 ZBTB24O43167 697 aaPredicted RBP9.8□□□□□ -0.84
LINC00540-201ENST00000611481 PRDM9Q9NQV7 894 aa9.8□□□□□ -0.84
LINC00540-201ENST00000611481 AVPP01185 164 aa9.79□□□□□ -0.84
LINC00540-201ENST00000611481 Q3C1V9 767 aa9.79□□□□□ -0.84
LINC00540-201ENST00000611481 RNF19BQ6ZMZ0 732 aa9.78□□□□□ -0.84
LINC00540-201ENST00000611481 AXIN1O15169 862 aa9.77□□□□□ -0.85
LINC00540-201ENST00000611481 CTC1Q2NKJ3 1217 aa9.77□□□□□ -0.85
LINC00540-201ENST00000611481 TTC24A2A3L6 582 aaPredicted RBP9.76□□□□□ -0.85
LINC00540-201ENST00000611481 TREML4Q6UXN2 200 aa9.75□□□□□ -0.85
LINC00540-201ENST00000611481 CD46P15529 392 aa9.74□□□□□ -0.85
LINC00540-201ENST00000611481 SMCPP49901 116 aaPredicted RBP9.74□□□□□ -0.85
LINC00540-201ENST00000611481 DACH1Q9UI36 760 aa9.74□□□□□ -0.85
LINC00540-201ENST00000611481 EIF4G1Q04637 1599 aaKnown RBP9.74□□□□□ -0.85
LINC00540-201ENST00000611481 WNT7AO00755 349 aa9.73□□□□□ -0.85
LINC00540-201ENST00000611481 MMP16P51512 607 aa9.73□□□□□ -0.85
LINC00540-201ENST00000611481 KDM4AO75164 1064 aa9.72□□□□□ -0.85
LINC00540-201ENST00000611481 TRIM32Q13049 653 aa9.72□□□□□ -0.85
LINC00540-201ENST00000611481 MAP2K5Q13163 448 aa9.72□□□□□ -0.85
LINC00540-201ENST00000611481 USB1Q9BQ65 265 aaKnown RBP9.72□□□□□ -0.85
LINC00540-201ENST00000611481 GMPR2Q9P2T1 348 aaKnown RBP9.72□□□□□ -0.85
LINC00540-201ENST00000611481 C11orf95C9JLR9 678 aaPredicted RBP9.71□□□□□ -0.86
LINC00540-201ENST00000611481 SNIP1Q8TAD8 396 aaKnown RBP9.71□□□□□ -0.86
LINC00540-201ENST00000611481 USP46P62068 366 aa9.7□□□□□ -0.86
LINC00540-201ENST00000611481 TULP1O00294 542 aaPredicted RBP9.69□□□□□ -0.86
LINC00540-201ENST00000611481 DXOO77932 396 aaKnown RBP9.69□□□□□ -0.86
LINC00540-201ENST00000611481 HAP1P54257 671 aaPredicted RBP9.69□□□□□ -0.86
LINC00540-201ENST00000611481 LCE2AQ5TA79 106 aaPredicted RBP9.69□□□□□ -0.86
LINC00540-201ENST00000611481 IRF6O14896 467 aa9.68□□□□□ -0.86
LINC00540-201ENST00000611481 SMPD1P17405 629 aa9.68□□□□□ -0.86
LINC00540-201ENST00000611481 MDM2Q00987 491 aaPredicted RBP9.67□□□□□ -0.86
LINC00540-201ENST00000611481 MRGPRX2Q96LB1 330 aa9.67□□□□□ -0.86
LINC00540-201ENST00000611481 REPIN1Q9BWE0 567 aaKnown RBP9.67□□□□□ -0.86
LINC00540-201ENST00000611481 MINK1Q8N4C8 1332 aaPredicted RBP9.66□□□□□ -0.86
LINC00540-201ENST00000611481 WFS1O76024 890 aa9.65□□□□□ -0.86
LINC00540-201ENST00000611481 CCDC24Q8N4L8 307 aa9.65□□□□□ -0.86
LINC00540-201ENST00000611481 KDM2AQ9Y2K7 1162 aa9.65□□□□□ -0.86
LINC00540-201ENST00000611481 SHROOM4Q9ULL8 1493 aa9.65□□□□□ -0.87
LINC00540-201ENST00000611481 J3QL48 77 aa9.64□□□□□ -0.87
LINC00540-201ENST00000611481 ERCC6Q03468 1493 aa9.64□□□□□ -0.87
LINC00540-201ENST00000611481 HOXA2O43364 376 aa9.63□□□□□ -0.87
LINC00540-201ENST00000611481 HLA-CQ95604 372 aa9.63□□□□□ -0.87
LINC00540-201ENST00000611481 ATP13A2Q9NQ11 1180 aa9.63□□□□□ -0.87
LINC00540-201ENST00000611481 WNT7BP56706 349 aa9.62□□□□□ -0.87
LINC00540-201ENST00000611481 RC3H1Q5TC82 1133 aaKnown RBP9.62□□□□□ -0.87
LINC00540-201ENST00000611481 CLCN1P35523 988 aa9.61□□□□□ -0.87
LINC00540-201ENST00000611481 SENP2Q9HC62 589 aa9.61□□□□□ -0.87
LINC00540-201ENST00000611481 JUNDP17535 347 aa9.6□□□□□ -0.87
LINC00540-201ENST00000611481 CCDC102AQ96A19 550 aa9.6□□□□□ -0.87
LINC00540-201ENST00000611481 GPCPD1Q9NPB8 672 aa9.6□□□□□ -0.87
LINC00540-201ENST00000611481 SKOR1P84550 965 aa9.59□□□□□ -0.87
LINC00540-201ENST00000611481 NFX1Q12986 1120 aaKnown RBP9.59□□□□□ -0.87
LINC00540-201ENST00000611481 HPS1Q92902 700 aa9.59□□□□□ -0.87
LINC00540-201ENST00000611481 GUCA2AQ02747 115 aa9.58□□□□□ -0.88
LINC00540-201ENST00000611481 NUTM1Q86Y26 1132 aa9.58□□□□□ -0.88
LINC00540-201ENST00000611481 TRIM47Q96LD4 638 aa9.58□□□□□ -0.88
LINC00540-201ENST00000611481 FAM217BQ9NTX9 383 aaPredicted RBP9.58□□□□□ -0.88
LINC00540-201ENST00000611481 SNRPBP14678 240 aaKnown RBP9.57□□□□□ -0.88
LINC00540-201ENST00000611481 KRI1Q8N9T8 703 aaKnown RBP9.57□□□□□ -0.88
LINC00540-201ENST00000611481 RETREG3Q86VR2 466 aa9.56□□□□□ -0.88
LINC00540-201ENST00000611481 SYMPKQ92797 1274 aaKnown RBP9.56□□□□□ -0.88
LINC00540-201ENST00000611481 KIFC2Q96AC6 838 aa9.56□□□□□ -0.88
LINC00540-201ENST00000611481 ALDH1A1P00352 501 aa9.55□□□□□ -0.88
LINC00540-201ENST00000611481 NUDT12Q9BQG2 462 aa9.55□□□□□ -0.88
LINC00540-201ENST00000611481 WIPF1O43516 503 aa9.54□□□□□ -0.88
LINC00540-201ENST00000611481 TERTO14746 1132 aaKnown RBP9.53□□□□□ -0.88
LINC00540-201ENST00000611481 INSM1Q01101 510 aaPredicted RBP9.53□□□□□ -0.88
LINC00540-201ENST00000611481 FDX1P10109 184 aa9.52□□□□□ -0.89
LINC00540-201ENST00000611481 VSIG10Q8N0Z9 540 aa9.52□□□□□ -0.89
LINC00540-201ENST00000611481 STK17AQ9UEE5 414 aa9.52□□□□□ -0.89
LINC00540-201ENST00000611481 C6orf229H3BNL8 230 aa9.51□□□□□ -0.89
LINC00540-201ENST00000611481 PTCRAQ6ISU1 281 aaPredicted RBP9.51□□□□□ -0.89
LINC00540-201ENST00000611481 EHBP1Q8NDI1 1231 aa9.51□□□□□ -0.89
LINC00540-201ENST00000611481 SIAH2O43255 324 aa9.5□□□□□ -0.89
LINC00540-201ENST00000611481 MS4A1P11836 297 aa9.5□□□□□ -0.89
LINC00540-201ENST00000611481 PCDHGC3Q9UN70 934 aa9.49□□□□□ -0.89
LINC00540-201ENST00000611481 WASF2Q9Y6W5 498 aa9.49□□□□□ -0.89
LINC00540-201ENST00000611481 MYO15BQ96JP2 1530 aa9.48□□□□□ -0.89
LINC00540-201ENST00000611481 CCNYL3P0C7X3 344 aa9.48□□□□□ -0.89
LINC00540-201ENST00000611481 SSTR3P32745 418 aaPredicted RBP9.47□□□□□ -0.89
LINC00540-201ENST00000611481 SH3BP2P78314 561 aa9.46□□□□□ -0.9
LINC00540-201ENST00000611481 PTPRNQ16849 979 aa9.46□□□□□ -0.9
LINC00540-201ENST00000611481 LCE2CQ5TA81 110 aa9.46□□□□□ -0.9
LINC00540-201ENST00000611481 CAPN5O15484 640 aaPredicted RBP9.45□□□□□ -0.9
LINC00540-201ENST00000611481 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.45□□□□□ -0.9
LINC00540-201ENST00000611481 SLC16A10Q8TF71 515 aa9.45□□□□□ -0.9
LINC00540-201ENST00000611481 SPIRE2Q8WWL2 714 aa9.45□□□□□ -0.9
LINC00540-201ENST00000611481 EVA1BQ9NVM1 165 aa9.44□□□□□ -0.9
LINC00540-201ENST00000611481 UNC93B1Q9H1C4 597 aa9.43□□□□□ -0.9
LINC00540-201ENST00000611481 MOXD2PA6NHM9 499 aa9.42□□□□□ -0.9
LINC00540-201ENST00000611481 SPDYE5A6NIY4 337 aa9.42□□□□□ -0.9
LINC00540-201ENST00000611481 BMP1P13497 986 aa9.42□□□□□ -0.9
LINC00540-201ENST00000611481 NDUFV2P19404 249 aa9.42□□□□□ -0.9
LINC00540-201ENST00000611481 KCNH2Q12809 1159 aa9.42□□□□□ -0.9
LINC00540-201ENST00000611481 TTLL12Q14166 644 aaPredicted RBP9.42□□□□□ -0.9
LINC00540-201ENST00000611481 TRIM46Q7Z4K8 759 aa9.42□□□□□ -0.9
LINC00540-201ENST00000611481 NXF1Q9UBU9 619 aaKnown RBP9.42□□□□□ -0.9
LINC00540-201ENST00000611481 DESI1Q6ICB0 168 aa9.41□□□□□ -0.9
LINC00540-201ENST00000611481 PRR7Q8TB68 274 aa9.41□□□□□ -0.9
LINC00540-201ENST00000611481 BAP1Q92560 729 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms