RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 CAMTA1Q9Y6Y1 1673 aa7.77□□□□□ -1.17
VRK3-226ENST00000602029 A0A0G2JS52 829 aa7.77□□□□□ -1.17
VRK3-226ENST00000602029 MYT1Q01538 1121 aa7.77□□□□□ -1.17
VRK3-226ENST00000602029 CCDC125Q86Z20 511 aa7.77□□□□□ -1.17
VRK3-226ENST00000602029 ORAI2Q96SN7 254 aa7.77□□□□□ -1.17
VRK3-226ENST00000602029 SLC4A1APQ9BWU0 796 aaKnown RBP7.77□□□□□ -1.17
VRK3-226ENST00000602029 TRPC5Q9UL62 973 aaPredicted RBP7.77□□□□□ -1.17
VRK3-226ENST00000602029 BLMP54132 1417 aaPredicted RBP7.77□□□□□ -1.17
VRK3-226ENST00000602029 RGL3Q3MIN7 710 aa7.76□□□□□ -1.17
VRK3-226ENST00000602029 LMOD2Q6P5Q4 547 aa7.76□□□□□ -1.17
VRK3-226ENST00000602029 CCDC9Q9Y3X0 531 aaKnown RBP7.76□□□□□ -1.17
VRK3-226ENST00000602029 C1orf167Q5SNV9 1468 aa7.75□□□□□ -1.17
VRK3-226ENST00000602029 SPHKAPQ2M3C7 1700 aa7.75□□□□□ -1.17
VRK3-226ENST00000602029 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.75□□□□□ -1.17
VRK3-226ENST00000602029 SF3B2Q13435 895 aaKnown RBP7.75□□□□□ -1.17
VRK3-226ENST00000602029 NPHP3Q7Z494 1330 aa7.75□□□□□ -1.17
VRK3-226ENST00000602029 NALCNQ8IZF0 1738 aa7.75□□□□□ -1.17
VRK3-226ENST00000602029 XRN1Q8IZH2 1706 aaKnown RBP7.75□□□□□ -1.17
VRK3-226ENST00000602029 LAMC1P11047 1609 aa7.74□□□□□ -1.17
VRK3-226ENST00000602029 COL22A1Q8NFW1 1626 aaPredicted RBP7.74□□□□□ -1.17
VRK3-226ENST00000602029 ROBO2Q9HCK4 1378 aa7.74□□□□□ -1.17
VRK3-226ENST00000602029 FOXO3O43524 673 aa7.74□□□□□ -1.17
VRK3-226ENST00000602029 FNBP4Q8N3X1 1017 aaPredicted RBP7.74□□□□□ -1.17
VRK3-226ENST00000602029 CEP350Q5VT06 3117 aa7.74□□□□□ -1.17
VRK3-226ENST00000602029 UTRNP46939 3433 aa7.74□□□□□ -1.17
VRK3-226ENST00000602029 CLTCL1P53675 1640 aa7.74□□□□□ -1.17
VRK3-226ENST00000602029 NRXN3Q9Y4C0 1643 aa7.73□□□□□ -1.17
VRK3-226ENST00000602029 NEXMIFQ5QGS0 1516 aa7.73□□□□□ -1.17
VRK3-226ENST00000602029 LRPPRCP42704 1394 aaKnown RBP7.72□□□□□ -1.17
VRK3-226ENST00000602029 PTCH1Q13635 1447 aa7.72□□□□□ -1.17
VRK3-226ENST00000602029 SOS2Q07890 1332 aaPredicted RBP7.72□□□□□ -1.17
VRK3-226ENST00000602029 RPGRIP1LQ68CZ1 1315 aa7.72□□□□□ -1.17
VRK3-226ENST00000602029 HFM1A2PYH4 1435 aa7.71□□□□□ -1.17
VRK3-226ENST00000602029 SENP3-EIF4A1A0A087X0R7 540 aa7.71□□□□□ -1.18
VRK3-226ENST00000602029 SAFB2Q14151 953 aaKnown RBP eCLIP7.71□□□□□ -1.18
VRK3-226ENST00000602029 CHD4Q14839 1912 aa7.71□□□□□ -1.18
VRK3-226ENST00000602029 CCDC144AA2RUR9 1427 aa7.7□□□□□ -1.18
VRK3-226ENST00000602029 RALGAPBQ86X10 1494 aa7.7□□□□□ -1.18
VRK3-226ENST00000602029 TNS1Q9HBL0 1735 aaKnown RBP7.7□□□□□ -1.18
VRK3-226ENST00000602029 TMEM132EQ6IEE7 984 aa7.7□□□□□ -1.18
VRK3-226ENST00000602029 WAPLQ7Z5K2 1190 aa7.7□□□□□ -1.18
VRK3-226ENST00000602029 GJD4Q96KN9 370 aaPredicted RBP7.7□□□□□ -1.18
VRK3-226ENST00000602029 KIF1BO60333 1816 aa7.7□□□□□ -1.18
VRK3-226ENST00000602029 NAIPQ13075 1403 aa7.69□□□□□ -1.18
VRK3-226ENST00000602029 RGPD1P0DJD0 1748 aa7.69□□□□□ -1.18
VRK3-226ENST00000602029 MYOM2P54296 1465 aa7.69□□□□□ -1.18
VRK3-226ENST00000602029 R3HDM1Q15032 1099 aaKnown RBP7.69□□□□□ -1.18
VRK3-226ENST00000602029 PSME1Q06323 249 aa7.68□□□□□ -1.18
VRK3-226ENST00000602029 KRT28Q7Z3Y7 464 aa7.68□□□□□ -1.18
VRK3-226ENST00000602029 UNC5CLQ8IV45 518 aa7.68□□□□□ -1.18
VRK3-226ENST00000602029 POGKQ9P215 609 aa7.68□□□□□ -1.18
VRK3-226ENST00000602029 ADGRF5Q8IZF2 1346 aa7.68□□□□□ -1.18
VRK3-226ENST00000602029 RRBP1Q9P2E9 1410 aaKnown RBP7.68□□□□□ -1.18
VRK3-226ENST00000602029 PIAS4Q8N2W9 510 aaPredicted RBP7.67□□□□□ -1.18
VRK3-226ENST00000602029 CABLES1Q8TDN4 633 aa7.67□□□□□ -1.18
VRK3-226ENST00000602029 EN1Q05925 392 aaPredicted RBP7.66□□□□□ -1.18
VRK3-226ENST00000602029 SEPT12Q8IYM1 358 aa7.66□□□□□ -1.18
VRK3-226ENST00000602029 ZNF784Q8NCA9 323 aaPredicted RBP7.66□□□□□ -1.18
VRK3-226ENST00000602029 PHF8Q9UPP1 1060 aa7.66□□□□□ -1.18
VRK3-226ENST00000602029 ANKRD30BQ9BXX2 1392 aa7.66□□□□□ -1.18
VRK3-226ENST00000602029 CDC42BPGQ6DT37 1551 aa7.66□□□□□ -1.18
VRK3-226ENST00000602029 PLCH1Q4KWH8 1693 aa7.66□□□□□ -1.18
VRK3-226ENST00000602029 MSH5O43196 834 aa7.65□□□□□ -1.18
VRK3-226ENST00000602029 PAK3O75914 559 aaPredicted RBP7.65□□□□□ -1.18
VRK3-226ENST00000602029 SLIT2O94813 1529 aa7.65□□□□□ -1.18
VRK3-226ENST00000602029 NUP188Q5SRE5 1749 aa7.65□□□□□ -1.18
VRK3-226ENST00000602029 PMFBP1Q8TBY8 1022 aa7.65□□□□□ -1.18
VRK3-226ENST00000602029 PXDNQ92626 1479 aa7.65□□□□□ -1.18
VRK3-226ENST00000602029 RREB1Q92766 1687 aa7.65□□□□□ -1.18
VRK3-226ENST00000602029 PLEKHH1Q9ULM0 1364 aa7.65□□□□□ -1.18
VRK3-226ENST00000602029 DHX57Q6P158 1386 aaKnown RBP7.64□□□□□ -1.19
VRK3-226ENST00000602029 SPATA31A3Q5VYP0 1347 aa7.64□□□□□ -1.19
VRK3-226ENST00000602029 BAG6P46379 1132 aa7.64□□□□□ -1.19
VRK3-226ENST00000602029 PRAM1Q96QH2 718 aa7.64□□□□□ -1.19
VRK3-226ENST00000602029 MPHOSPH9Q99550 1183 aa7.64□□□□□ -1.19
VRK3-226ENST00000602029 HIRIP3Q9BW71 556 aaPredicted RBP7.64□□□□□ -1.19
VRK3-226ENST00000602029 TNS3Q68CZ2 1445 aa7.63□□□□□ -1.19
VRK3-226ENST00000602029 YTHDC2Q9H6S0 1430 aaKnown RBP7.63□□□□□ -1.19
VRK3-226ENST00000602029 ADRA2BP18089 450 aa7.63□□□□□ -1.19
VRK3-226ENST00000602029 C1QTNF8P60827 252 aa7.63□□□□□ -1.19
VRK3-226ENST00000602029 FAM98CQ17RN3 349 aaKnown RBP7.63□□□□□ -1.19
VRK3-226ENST00000602029 KRT27Q7Z3Y8 459 aa7.63□□□□□ -1.19
VRK3-226ENST00000602029 USP32Q8NFA0 1604 aa7.63□□□□□ -1.19
VRK3-226ENST00000602029 ARHGEF10O15013 1369 aa7.62□□□□□ -1.19
VRK3-226ENST00000602029 GPRASP1Q5JY77 1395 aa7.62□□□□□ -1.19
VRK3-226ENST00000602029 PPLO60437 1756 aa7.62□□□□□ -1.19
VRK3-226ENST00000602029 ABCA3Q99758 1704 aa7.62□□□□□ -1.19
VRK3-226ENST00000602029 NWD2Q9ULI1 1742 aa7.62□□□□□ -1.19
VRK3-226ENST00000602029 CFAP70Q5T0N1 1121 aa7.62□□□□□ -1.19
VRK3-226ENST00000602029 FAM182BQ5T319 152 aa7.62□□□□□ -1.19
VRK3-226ENST00000602029 NGDNQ8NEJ9 315 aaKnown RBP7.62□□□□□ -1.19
VRK3-226ENST00000602029 KDM2AQ9Y2K7 1162 aa7.62□□□□□ -1.19
VRK3-226ENST00000602029 NRAPQ86VF7 1730 aa7.61□□□□□ -1.19
VRK3-226ENST00000602029 ABCC11Q96J66 1382 aa7.61□□□□□ -1.19
VRK3-226ENST00000602029 MINK1Q8N4C8 1332 aaPredicted RBP7.61□□□□□ -1.19
VRK3-226ENST00000602029 VPS72Q15906 364 aa7.61□□□□□ -1.19
VRK3-226ENST00000602029 EZH2Q15910 746 aaKnown RBP7.61□□□□□ -1.19
VRK3-226ENST00000602029 BTG4Q9NY30 223 aa7.61□□□□□ -1.19
VRK3-226ENST00000602029 TRAK1Q9UPV9 953 aa7.61□□□□□ -1.19
VRK3-226ENST00000602029 KIF1AQ12756 1690 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms