RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 FUT2Q10981 343 aa8.61□□□□□ -1.03
VRK3-222ENST00000601324 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.61□□□□□ -1.03
VRK3-222ENST00000601324 PCDH10Q9P2E7 1040 aa8.61□□□□□ -1.03
VRK3-222ENST00000601324 ATP1B4Q9UN42 357 aaPredicted RBP8.61□□□□□ -1.03
VRK3-222ENST00000601324 ACTN4O43707 911 aaKnown RBP8.6□□□□□ -1.03
VRK3-222ENST00000601324 GRIPAP1Q4V328 841 aa8.6□□□□□ -1.03
VRK3-222ENST00000601324 KCTD12Q96CX2 325 aaKnown RBP8.6□□□□□ -1.03
VRK3-222ENST00000601324 ATP6V1AP38606 617 aa8.59□□□□□ -1.03
VRK3-222ENST00000601324 FDX1P10109 184 aa8.58□□□□□ -1.04
VRK3-222ENST00000601324 APLP1P51693 650 aa8.58□□□□□ -1.04
VRK3-222ENST00000601324 WBP1LQ9NX94 342 aa8.58□□□□□ -1.04
VRK3-222ENST00000601324 ARHGEF11O15085 1522 aa8.58□□□□□ -1.04
VRK3-222ENST00000601324 MYT1LQ9UL68 1186 aa8.57□□□□□ -1.04
VRK3-222ENST00000601324 GUCA2AQ02747 115 aa8.56□□□□□ -1.04
VRK3-222ENST00000601324 PRPF38BQ5VTL8 546 aaKnown RBP8.56□□□□□ -1.04
VRK3-222ENST00000601324 PPP2R2DQ66LE6 453 aa8.56□□□□□ -1.04
VRK3-222ENST00000601324 HLA-CQ95604 372 aa8.56□□□□□ -1.04
VRK3-222ENST00000601324 PCDHGC3Q9UN70 934 aa8.56□□□□□ -1.04
VRK3-222ENST00000601324 PCDHB15Q9Y5E8 787 aa8.56□□□□□ -1.04
VRK3-222ENST00000601324 MROH2BQ7Z745 1585 aa8.56□□□□□ -1.04
VRK3-222ENST00000601324 CSPP1Q1MSJ5 1256 aa8.55□□□□□ -1.04
VRK3-222ENST00000601324 MORN1Q5T089 497 aa8.55□□□□□ -1.04
VRK3-222ENST00000601324 NYAP1Q6ZVC0 841 aa8.55□□□□□ -1.04
VRK3-222ENST00000601324 LILRB3O75022 631 aa8.54□□□□□ -1.04
VRK3-222ENST00000601324 QPCTQ16769 361 aa8.54□□□□□ -1.04
VRK3-222ENST00000601324 PUS10Q3MIT2 529 aaKnown RBP8.54□□□□□ -1.04
VRK3-222ENST00000601324 ZBTB3Q9H5J0 574 aa8.54□□□□□ -1.04
VRK3-222ENST00000601324 PCDHB3Q9Y5E6 796 aa8.54□□□□□ -1.04
VRK3-222ENST00000601324 CEP164Q9UPV0 1460 aa8.53□□□□□ -1.04
VRK3-222ENST00000601324 ERICH6Q7L0X2 663 aa8.53□□□□□ -1.04
VRK3-222ENST00000601324 CABLES1Q8TDN4 633 aa8.53□□□□□ -1.04
VRK3-222ENST00000601324 HRCP23327 699 aa8.52□□□□□ -1.05
VRK3-222ENST00000601324 RFC5P40937 340 aa8.52□□□□□ -1.05
VRK3-222ENST00000601324 Q3C1V9 767 aa8.52□□□□□ -1.05
VRK3-222ENST00000601324 FBXO31Q5XUX0 539 aaPredicted RBP8.52□□□□□ -1.05
VRK3-222ENST00000601324 SLC27A5Q9Y2P5 690 aa8.52□□□□□ -1.05
VRK3-222ENST00000601324 FANCD2Q9BXW9 1451 aa8.51□□□□□ -1.05
VRK3-222ENST00000601324 URB2Q14146 1524 aaKnown RBP8.51□□□□□ -1.05
VRK3-222ENST00000601324 NUTM2BA6NNL0 878 aaPredicted RBP8.51□□□□□ -1.05
VRK3-222ENST00000601324 NUTM2EB1AL46 878 aaPredicted RBP8.51□□□□□ -1.05
VRK3-222ENST00000601324 NR1I2O75469 434 aa8.51□□□□□ -1.05
VRK3-222ENST00000601324 PTPN5P54829 565 aa8.51□□□□□ -1.05
VRK3-222ENST00000601324 MTMR2Q13614 643 aa8.51□□□□□ -1.05
VRK3-222ENST00000601324 NUTM2DQ5VT03 806 aaPredicted RBP8.51□□□□□ -1.05
VRK3-222ENST00000601324 NUTM2AQ8IVF1 878 aaPredicted RBP8.51□□□□□ -1.05
VRK3-222ENST00000601324 SPNS2Q8IVW8 549 aa8.51□□□□□ -1.05
VRK3-222ENST00000601324 ARAP1Q96P48 1450 aa8.51□□□□□ -1.05
VRK3-222ENST00000601324 SPDYE5A6NIY4 337 aa8.5□□□□□ -1.05
VRK3-222ENST00000601324 C6orf229H3BNL8 230 aa8.5□□□□□ -1.05
VRK3-222ENST00000601324 FLIIQ13045 1269 aa8.5□□□□□ -1.05
VRK3-222ENST00000601324 TMEM259Q4ZIN3 620 aa8.5□□□□□ -1.05
VRK3-222ENST00000601324 RTL5Q5HYW3 569 aaPredicted RBP8.5□□□□□ -1.05
VRK3-222ENST00000601324 BLOC1S3Q6QNY0 202 aa8.5□□□□□ -1.05
VRK3-222ENST00000601324 CYB5RLQ6IPT4 315 aa8.49□□□□□ -1.05
VRK3-222ENST00000601324 SCUBE3Q8IX30 993 aa8.49□□□□□ -1.05
VRK3-222ENST00000601324 TIMELESSQ9UNS1 1208 aa8.49□□□□□ -1.05
VRK3-222ENST00000601324 SALL2Q9Y467 1007 aaPredicted RBP8.49□□□□□ -1.05
VRK3-222ENST00000601324 BANK1Q8NDB2 785 aa8.48□□□□□ -1.05
VRK3-222ENST00000601324 RNF166Q96A37 237 aaPredicted RBP8.48□□□□□ -1.05
VRK3-222ENST00000601324 CFTRP13569 1480 aa8.48□□□□□ -1.05
VRK3-222ENST00000601324 C14orf37Q86TY3 774 aa8.47□□□□□ -1.05
VRK3-222ENST00000601324 RETREG3Q86VR2 466 aa8.47□□□□□ -1.05
VRK3-222ENST00000601324 SYMPKQ92797 1274 aaKnown RBP8.47□□□□□ -1.05
VRK3-222ENST00000601324 ZNF608Q9ULD9 1512 aaPredicted RBP8.47□□□□□ -1.05
VRK3-222ENST00000601324 COPS2P61201 443 aa8.46□□□□□ -1.06
VRK3-222ENST00000601324 MCM6Q14566 821 aa8.46□□□□□ -1.06
VRK3-222ENST00000601324 BRICD5Q6PL45 260 aa8.46□□□□□ -1.06
VRK3-222ENST00000601324 RNF19BQ6ZMZ0 732 aa8.46□□□□□ -1.06
VRK3-222ENST00000601324 CFAP99D6REC4 459 aa8.45□□□□□ -1.06
VRK3-222ENST00000601324 AP1G2O75843 785 aa8.45□□□□□ -1.06
VRK3-222ENST00000601324 FMNL1O95466 1100 aaPredicted RBP8.45□□□□□ -1.06
VRK3-222ENST00000601324 PRR7Q8TB68 274 aa8.45□□□□□ -1.06
VRK3-222ENST00000601324 THAP11Q96EK4 314 aa8.45□□□□□ -1.06
VRK3-222ENST00000601324 MTRQ99707 1265 aa8.45□□□□□ -1.06
VRK3-222ENST00000601324 HCSTQ9UBK5 93 aa8.45□□□□□ -1.06
VRK3-222ENST00000601324 HELBQ8NG08 1087 aaPredicted RBP8.44□□□□□ -1.06
VRK3-222ENST00000601324 USB1Q9BQ65 265 aaKnown RBP8.44□□□□□ -1.06
VRK3-222ENST00000601324 TJAP1Q5JTD0 557 aa8.43□□□□□ -1.06
VRK3-222ENST00000601324 IL21Q9HBE4 155 aa8.43□□□□□ -1.06
VRK3-222ENST00000601324 SOCS7O14512 581 aa8.42□□□□□ -1.06
VRK3-222ENST00000601324 ZPR1O75312 459 aa8.42□□□□□ -1.06
VRK3-222ENST00000601324 USP17L8P0C7I0 530 aa8.42□□□□□ -1.06
VRK3-222ENST00000601324 DESI1Q6ICB0 168 aa8.42□□□□□ -1.06
VRK3-222ENST00000601324 SPSB2Q99619 263 aa8.42□□□□□ -1.06
VRK3-222ENST00000601324 IFT140Q96RY7 1462 aa8.41□□□□□ -1.06
VRK3-222ENST00000601324 RSF1Q96T23 1441 aaPredicted RBP8.41□□□□□ -1.06
VRK3-222ENST00000601324 TSC1Q92574 1164 aa8.41□□□□□ -1.06
VRK3-222ENST00000601324 SNRKQ9NRH2 765 aa8.41□□□□□ -1.06
VRK3-222ENST00000601324 TLL1O43897 1013 aa8.4□□□□□ -1.06
VRK3-222ENST00000601324 CTDSPL2Q05D32 466 aa8.4□□□□□ -1.06
VRK3-222ENST00000601324 MSS51Q4VC12 460 aa8.4□□□□□ -1.06
VRK3-222ENST00000601324 ADH1BP00325 375 aa8.39□□□□□ -1.07
VRK3-222ENST00000601324 MMRN1Q13201 1228 aa8.39□□□□□ -1.07
VRK3-222ENST00000601324 MTMR14Q8NCE2 650 aa8.39□□□□□ -1.07
VRK3-222ENST00000601324 ZNF516Q92618 1163 aa8.39□□□□□ -1.07
VRK3-222ENST00000601324 UBTFP17480 764 aaKnown RBP8.38□□□□□ -1.07
VRK3-222ENST00000601324 JUNDP17535 347 aa8.38□□□□□ -1.07
VRK3-222ENST00000601324 FAM160A2Q8N612 972 aaPredicted RBP8.38□□□□□ -1.07
VRK3-222ENST00000601324 WIZO95785 1651 aa8.37□□□□□ -1.07
VRK3-222ENST00000601324 APBB1O00213 710 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms