RNA–Protein interactions for RNA: ENST00000600383.1

HIF3A-218, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,101 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-218ENST00000600383 NRXN3Q9Y4C0 1643 aa20.48■□□□□ 0.87
HIF3A-218ENST00000600383 SENP3-EIF4A1A0A087X0R7 540 aa20.47■□□□□ 0.87
HIF3A-218ENST00000600383 PUS7Q96PZ0 661 aaKnown RBP20.47■□□□□ 0.87
HIF3A-218ENST00000600383 CDK19Q9BWU1 502 aa20.47■□□□□ 0.87
HIF3A-218ENST00000600383 RIMS1Q86UR5 1692 aaKnown RBP20.47■□□□□ 0.87
HIF3A-218ENST00000600383 ABCC11Q96J66 1382 aa20.47■□□□□ 0.87
HIF3A-218ENST00000600383 PLEKHH1Q9ULM0 1364 aa20.47■□□□□ 0.87
HIF3A-218ENST00000600383 SETD1AO15047 1707 aaKnown RBP20.45■□□□□ 0.86
HIF3A-218ENST00000600383 PPP2R1AP30153 589 aa20.44■□□□□ 0.86
HIF3A-218ENST00000600383 PLEKHG1Q9ULL1 1385 aa20.44■□□□□ 0.86
HIF3A-218ENST00000600383 NSD3Q9BZ95 1437 aa20.43■□□□□ 0.86
HIF3A-218ENST00000600383 ADAMTS13Q76LX8 1427 aa20.42■□□□□ 0.86
HIF3A-218ENST00000600383 NPC1L1Q9UHC9 1359 aa20.41■□□□□ 0.86
HIF3A-218ENST00000600383 DLC1Q96QB1 1528 aa20.4■□□□□ 0.86
HIF3A-218ENST00000600383 ATAD2Q6PL18 1390 aa20.39■□□□□ 0.85
HIF3A-218ENST00000600383 TNNT2P45379 298 aaPredicted RBP20.39■□□□□ 0.85
HIF3A-218ENST00000600383 SLIT1O75093 1534 aa20.39■□□□□ 0.85
HIF3A-218ENST00000600383 CABP1Q9NZU7 370 aa20.38■□□□□ 0.85
HIF3A-218ENST00000600383 ANKRD36BQ8N2N9 1353 aa20.38■□□□□ 0.85
HIF3A-218ENST00000600383 ARHGAP23Q9P227 1491 aa20.38■□□□□ 0.85
HIF3A-218ENST00000600383 MORC1Q86VD1 984 aa20.38■□□□□ 0.85
HIF3A-218ENST00000600383 ZBED9Q6R2W3 1325 aa20.38■□□□□ 0.85
HIF3A-218ENST00000600383 ADAMTSL3P82987 1691 aa20.37■□□□□ 0.85
HIF3A-218ENST00000600383 CGNL1Q0VF96 1302 aa20.37■□□□□ 0.85
HIF3A-218ENST00000600383 TERF2IPQ9NYB0 399 aa20.36■□□□□ 0.85
HIF3A-218ENST00000600383 WASLO00401 505 aaPredicted RBP20.36■□□□□ 0.85
HIF3A-218ENST00000600383 SIRT1Q96EB6 747 aa20.36■□□□□ 0.85
HIF3A-218ENST00000600383 AMOTL2Q9Y2J4 779 aa20.35■□□□□ 0.85
HIF3A-218ENST00000600383 TBX22Q9Y458 520 aa20.35■□□□□ 0.85
HIF3A-218ENST00000600383 ROBO2Q9HCK4 1378 aa20.35■□□□□ 0.85
HIF3A-218ENST00000600383 CEP170BQ9Y4F5 1589 aaPredicted RBP20.35■□□□□ 0.85
HIF3A-218ENST00000600383 A0A1W2PP64 1363 aa20.34■□□□□ 0.85
HIF3A-218ENST00000600383 NINLQ9Y2I6 1382 aa20.34■□□□□ 0.85
HIF3A-218ENST00000600383 FAM135BQ49AJ0 1406 aa20.34■□□□□ 0.85
HIF3A-218ENST00000600383 HDGFL2Q7Z4V5 671 aaPredicted RBP20.33■□□□□ 0.84
HIF3A-218ENST00000600383 ANKLE2Q86XL3 938 aa20.33■□□□□ 0.84
HIF3A-218ENST00000600383 SALL2Q9Y467 1007 aaPredicted RBP20.33■□□□□ 0.84
HIF3A-218ENST00000600383 TECPR2O15040 1411 aa20.32■□□□□ 0.84
HIF3A-218ENST00000600383 MED14O60244 1454 aa20.32■□□□□ 0.84
HIF3A-218ENST00000600383 WDR43Q15061 677 aaKnown RBP eCLIP20.31■□□□□ 0.84
HIF3A-218ENST00000600383 ADAMTS8Q9UP79 889 aa20.31■□□□□ 0.84
HIF3A-218ENST00000600383 PTPRUQ92729 1446 aa20.31■□□□□ 0.84
HIF3A-218ENST00000600383 NUDT16Q96DE0 195 aaKnown RBP20.3■□□□□ 0.84
HIF3A-218ENST00000600383 NCKAP5LQ9HCH0 1330 aa20.29■□□□□ 0.84
HIF3A-218ENST00000600383 SETD1BQ9UPS6 1966 aaKnown RBP20.29■□□□□ 0.84
HIF3A-218ENST00000600383 NUTM2FA1L443 756 aa20.29■□□□□ 0.84
HIF3A-218ENST00000600383 PELP1Q8IZL8 1130 aaKnown RBP20.29■□□□□ 0.84
HIF3A-218ENST00000600383 GGNBP2Q9H3C7 697 aa20.29■□□□□ 0.84
HIF3A-218ENST00000600383 CPS1P31327 1500 aa20.28■□□□□ 0.84
HIF3A-218ENST00000600383 KNDC1Q76NI1 1749 aa20.28■□□□□ 0.84
HIF3A-218ENST00000600383 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.27■□□□□ 0.84
HIF3A-218ENST00000600383 CD163L1Q9NR16 1453 aa20.26■□□□□ 0.83
HIF3A-218ENST00000600383 CCDC61Q9Y6R9 512 aa20.26■□□□□ 0.83
HIF3A-218ENST00000600383 FYB1O15117 783 aa20.25■□□□□ 0.83
HIF3A-218ENST00000600383 SUPT16HQ9Y5B9 1047 aaKnown RBP20.25■□□□□ 0.83
HIF3A-218ENST00000600383 PPIP5K1Q6PFW1 1433 aa20.24■□□□□ 0.83
HIF3A-218ENST00000600383 KCNA6P17658 529 aa20.23■□□□□ 0.83
HIF3A-218ENST00000600383 MTHFSP49914 203 aa20.23■□□□□ 0.83
HIF3A-218ENST00000600383 NSD2O96028 1365 aa20.22■□□□□ 0.83
HIF3A-218ENST00000600383 USP32Q8NFA0 1604 aa20.21■□□□□ 0.83
HIF3A-218ENST00000600383 FKBP8Q14318 412 aa20.21■□□□□ 0.83
HIF3A-218ENST00000600383 PRR36Q9H6K5 1346 aa20.21■□□□□ 0.83
HIF3A-218ENST00000600383 NEFLP07196 543 aa20.21■□□□□ 0.83
HIF3A-218ENST00000600383 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.2■□□□□ 0.83
HIF3A-218ENST00000600383 ZNF142P52746 1687 aaPredicted RBP20.19■□□□□ 0.82
HIF3A-218ENST00000600383 DIP2AQ14689 1571 aa20.19■□□□□ 0.82
HIF3A-218ENST00000600383 CCDC146Q8IYE0 955 aa20.18■□□□□ 0.82
HIF3A-218ENST00000600383 ATP7BP35670 1465 aa20.18■□□□□ 0.82
HIF3A-218ENST00000600383 POLR3AO14802 1390 aaPredicted RBP20.17■□□□□ 0.82
HIF3A-218ENST00000600383 RBM33Q96EV2 1170 aaKnown RBP20.17■□□□□ 0.82
HIF3A-218ENST00000600383 BLMP54132 1417 aaPredicted RBP20.17■□□□□ 0.82
HIF3A-218ENST00000600383 CFAP53Q96M91 514 aa20.17■□□□□ 0.82
HIF3A-218ENST00000600383 PTCH1Q13635 1447 aa20.16■□□□□ 0.82
HIF3A-218ENST00000600383 INSRP06213 1382 aa20.15■□□□□ 0.82
HIF3A-218ENST00000600383 PIK3R4Q99570 1358 aa20.15■□□□□ 0.82
HIF3A-218ENST00000600383 ZNF692Q9BU19 519 aaPredicted RBP20.15■□□□□ 0.82
HIF3A-218ENST00000600383 NUDCQ9Y266 331 aa20.15■□□□□ 0.82
HIF3A-218ENST00000600383 CPSF1Q10570 1443 aaKnown RBP20.15■□□□□ 0.82
HIF3A-218ENST00000600383 FBLN1P23142 703 aa20.14■□□□□ 0.81
HIF3A-218ENST00000600383 NME9Q86XW9 330 aa20.14■□□□□ 0.81
HIF3A-218ENST00000600383 ACEP12821 1306 aa20.13■□□□□ 0.81
HIF3A-218ENST00000600383 PMFBP1Q8TBY8 1022 aa20.13■□□□□ 0.81
HIF3A-218ENST00000600383 NPHP4O75161 1426 aaPredicted RBP20.12■□□□□ 0.81
HIF3A-218ENST00000600383 SMG6Q86US8 1419 aaKnown RBP20.12■□□□□ 0.81
HIF3A-218ENST00000600383 IRX6P78412 446 aaPredicted RBP20.12■□□□□ 0.81
HIF3A-218ENST00000600383 ZRANB1Q9UGI0 708 aa20.12■□□□□ 0.81
HIF3A-218ENST00000600383 ADGRB2O60241 1585 aa20.11■□□□□ 0.81
HIF3A-218ENST00000600383 PPM1GO15355 546 aaPredicted RBP20.11■□□□□ 0.81
HIF3A-218ENST00000600383 CDCA7LQ96GN5 454 aa20.11■□□□□ 0.81
HIF3A-218ENST00000600383 EDC4Q6P2E9 1401 aaKnown RBP20.11■□□□□ 0.81
HIF3A-218ENST00000600383 APAF1O14727 1248 aa20.11■□□□□ 0.81
HIF3A-218ENST00000600383 XRN1Q8IZH2 1706 aaKnown RBP20.1■□□□□ 0.81
HIF3A-218ENST00000600383 PLEKHG3A1L390 1219 aa20.09■□□□□ 0.81
HIF3A-218ENST00000600383 CDC42BPGQ6DT37 1551 aa20.09■□□□□ 0.81
HIF3A-218ENST00000600383 PDE3BQ13370 1112 aa20.08■□□□□ 0.81
HIF3A-218ENST00000600383 NGDNQ8NEJ9 315 aaKnown RBP20.08■□□□□ 0.81
HIF3A-218ENST00000600383 COG3Q96JB2 828 aa20.08■□□□□ 0.8
HIF3A-218ENST00000600383 U2AF1L5P0DN76 240 aaPredicted RBP20.07■□□□□ 0.8
HIF3A-218ENST00000600383 U2AF1Q01081 240 aaKnown RBP eCLIP20.07■□□□□ 0.8
HIF3A-218ENST00000600383 C14orf37Q86TY3 774 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms