RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 C19orf44Q9H6X5 657 aa20.39■□□□□ 0.85
VRK3-213ENST00000597215 DCCP43146 1447 aa20.38■□□□□ 0.85
VRK3-213ENST00000597215 EIF3AQ14152 1382 aaKnown RBP20.38■□□□□ 0.85
VRK3-213ENST00000597215 SAFB2Q14151 953 aaKnown RBP eCLIP20.36■□□□□ 0.85
VRK3-213ENST00000597215 CDC42BPGQ6DT37 1551 aa20.35■□□□□ 0.85
VRK3-213ENST00000597215 ATF3P18847 181 aa20.35■□□□□ 0.85
VRK3-213ENST00000597215 CENPJQ9HC77 1338 aaPredicted RBP20.34■□□□□ 0.85
VRK3-213ENST00000597215 UBAP1LF5GYI3 381 aa20.34■□□□□ 0.85
VRK3-213ENST00000597215 TOM1O60784 492 aa20.34■□□□□ 0.85
VRK3-213ENST00000597215 CADPS2Q86UW7 1296 aa20.34■□□□□ 0.85
VRK3-213ENST00000597215 ADGRB2O60241 1585 aa20.34■□□□□ 0.85
VRK3-213ENST00000597215 QRICH2Q9H0J4 1663 aa20.33■□□□□ 0.85
VRK3-213ENST00000597215 MINK1Q8N4C8 1332 aaPredicted RBP20.3■□□□□ 0.84
VRK3-213ENST00000597215 USP47Q96K76 1375 aa20.29■□□□□ 0.84
VRK3-213ENST00000597215 FMN2Q9NZ56 1722 aa20.28■□□□□ 0.84
VRK3-213ENST00000597215 HIRIP3Q9BW71 556 aaPredicted RBP20.27■□□□□ 0.84
VRK3-213ENST00000597215 MST1RQ04912 1400 aa20.27■□□□□ 0.83
VRK3-213ENST00000597215 FBXO41Q8TF61 875 aa20.26■□□□□ 0.83
VRK3-213ENST00000597215 SLAIN2Q9P270 581 aa20.26■□□□□ 0.83
VRK3-213ENST00000597215 SBNO2Q9Y2G9 1366 aa20.25■□□□□ 0.83
VRK3-213ENST00000597215 PIP4K2BP78356 416 aa20.24■□□□□ 0.83
VRK3-213ENST00000597215 SCAF1Q9H7N4 1312 aaKnown RBP20.24■□□□□ 0.83
VRK3-213ENST00000597215 C1orf167Q5SNV9 1468 aa20.24■□□□□ 0.83
VRK3-213ENST00000597215 WASLO00401 505 aaPredicted RBP20.23■□□□□ 0.83
VRK3-213ENST00000597215 ZEB1P37275 1124 aaPredicted RBP20.23■□□□□ 0.83
VRK3-213ENST00000597215 ST20-MTHFSA0A0A6YYL1 179 aa20.22■□□□□ 0.83
VRK3-213ENST00000597215 TULP4Q9NRJ4 1543 aa20.22■□□□□ 0.83
VRK3-213ENST00000597215 ANKARQ7Z5J8 1434 aa20.21■□□□□ 0.83
VRK3-213ENST00000597215 ROBO1Q9Y6N7 1651 aa20.21■□□□□ 0.83
VRK3-213ENST00000597215 EVC2Q86UK5 1308 aa20.21■□□□□ 0.83
VRK3-213ENST00000597215 EIF4G2P78344 907 aaKnown RBP eCLIP20.2■□□□□ 0.82
VRK3-213ENST00000597215 NUTM2FA1L443 756 aa20.19■□□□□ 0.82
VRK3-213ENST00000597215 SLC24A1O60721 1099 aa20.19■□□□□ 0.82
VRK3-213ENST00000597215 CDK19Q9BWU1 502 aa20.19■□□□□ 0.82
VRK3-213ENST00000597215 USP32Q8NFA0 1604 aa20.18■□□□□ 0.82
VRK3-213ENST00000597215 RGPD8O14715 1765 aaPredicted RBP20.18■□□□□ 0.82
VRK3-213ENST00000597215 BRINP3Q76B58 766 aa20.17■□□□□ 0.82
VRK3-213ENST00000597215 TESK2Q96S53 571 aa20.17■□□□□ 0.82
VRK3-213ENST00000597215 ITSN1Q15811 1721 aa20.16■□□□□ 0.82
VRK3-213ENST00000597215 SRPK2P78362 688 aaKnown RBP20.16■□□□□ 0.82
VRK3-213ENST00000597215 ATP7BP35670 1465 aa20.16■□□□□ 0.82
VRK3-213ENST00000597215 HSPA5P11021 654 aaKnown RBP20.15■□□□□ 0.82
VRK3-213ENST00000597215 ESCO1Q5FWF5 840 aa20.15■□□□□ 0.82
VRK3-213ENST00000597215 KIF1AQ12756 1690 aa20.15■□□□□ 0.82
VRK3-213ENST00000597215 PRR36Q9H6K5 1346 aa20.14■□□□□ 0.81
VRK3-213ENST00000597215 NUDT16Q96DE0 195 aaKnown RBP20.14■□□□□ 0.81
VRK3-213ENST00000597215 ORAI2Q96SN7 254 aa20.14■□□□□ 0.81
VRK3-213ENST00000597215 TOPAZ1Q8N9V7 1692 aa20.13■□□□□ 0.81
VRK3-213ENST00000597215 CABP2Q9NPB3 220 aa20.13■□□□□ 0.81
VRK3-213ENST00000597215 TMF1P82094 1093 aa20.12■□□□□ 0.81
VRK3-213ENST00000597215 NHSL1Q5SYE7 1610 aa20.12■□□□□ 0.81
VRK3-213ENST00000597215 AHDC1Q5TGY3 1603 aaPredicted RBP20.12■□□□□ 0.81
VRK3-213ENST00000597215 PHF8Q9UPP1 1060 aa20.11■□□□□ 0.81
VRK3-213ENST00000597215 ATAD2Q6PL18 1390 aa20.1■□□□□ 0.81
VRK3-213ENST00000597215 CCDC61Q9Y6R9 512 aa20.1■□□□□ 0.81
VRK3-213ENST00000597215 PHLPP1O60346 1717 aa20.1■□□□□ 0.81
VRK3-213ENST00000597215 PUS7Q96PZ0 661 aaKnown RBP20.09■□□□□ 0.81
VRK3-213ENST00000597215 DISP3Q9P2K9 1392 aa20.08■□□□□ 0.81
VRK3-213ENST00000597215 CDCA8Q53HL2 280 aa20.08■□□□□ 0.81
VRK3-213ENST00000597215 NPHP3Q7Z494 1330 aa20.07■□□□□ 0.8
VRK3-213ENST00000597215 PPIP5K1Q6PFW1 1433 aa20.07■□□□□ 0.8
VRK3-213ENST00000597215 PMFBP1Q8TBY8 1022 aa20.06■□□□□ 0.8
VRK3-213ENST00000597215 FOXO3O43524 673 aa20.05■□□□□ 0.8
VRK3-213ENST00000597215 HSPA1LP34931 641 aa20.05■□□□□ 0.8
VRK3-213ENST00000597215 COL16A1Q07092 1604 aaPredicted RBP20.05■□□□□ 0.8
VRK3-213ENST00000597215 PLEKHG3A1L390 1219 aa20.04■□□□□ 0.8
VRK3-213ENST00000597215 NGDNQ8NEJ9 315 aaKnown RBP20.04■□□□□ 0.8
VRK3-213ENST00000597215 DDX17Q92841 729 aaKnown RBP20.04■□□□□ 0.8
VRK3-213ENST00000597215 CABP1Q9NZU7 370 aa20.02■□□□□ 0.8
VRK3-213ENST00000597215 POLR3AO14802 1390 aaPredicted RBP20.02■□□□□ 0.8
VRK3-213ENST00000597215 NINLQ9Y2I6 1382 aa20.02■□□□□ 0.8
VRK3-213ENST00000597215 PXDNQ92626 1479 aa20.02■□□□□ 0.8
VRK3-213ENST00000597215 SOS2Q07890 1332 aaPredicted RBP20.02■□□□□ 0.79
VRK3-213ENST00000597215 ACEP12821 1306 aa20.01■□□□□ 0.79
VRK3-213ENST00000597215 PSME1Q06323 249 aa20■□□□□ 0.79
VRK3-213ENST00000597215 XPCQ01831 940 aaPredicted RBP19.99■□□□□ 0.79
VRK3-213ENST00000597215 KRT28Q7Z3Y7 464 aa19.99■□□□□ 0.79
VRK3-213ENST00000597215 TMC1Q8TDI8 760 aa19.99■□□□□ 0.79
VRK3-213ENST00000597215 AKAP12Q02952 1782 aa19.98■□□□□ 0.79
VRK3-213ENST00000597215 LRRC59Q96AG4 307 aaKnown RBP19.97■□□□□ 0.79
VRK3-213ENST00000597215 TRPM3Q9HCF6 1732 aaPredicted RBP19.96■□□□□ 0.79
VRK3-213ENST00000597215 SLC12A5Q9H2X9 1139 aa19.96■□□□□ 0.79
VRK3-213ENST00000597215 MYOM1P52179 1685 aa19.96■□□□□ 0.79
VRK3-213ENST00000597215 SBNO1A3KN83 1393 aa19.95■□□□□ 0.79
VRK3-213ENST00000597215 POLR3GLQ9BT43 218 aa19.95■□□□□ 0.78
VRK3-213ENST00000597215 ZNF692Q9BU19 519 aaPredicted RBP19.95■□□□□ 0.78
VRK3-213ENST00000597215 JCADQ9P266 1359 aa19.95■□□□□ 0.78
VRK3-213ENST00000597215 CPSF1Q10570 1443 aaKnown RBP19.94■□□□□ 0.78
VRK3-213ENST00000597215 SHPRHQ149N8 1683 aa19.94■□□□□ 0.78
VRK3-213ENST00000597215 HDGFL2Q7Z4V5 671 aaPredicted RBP19.94■□□□□ 0.78
VRK3-213ENST00000597215 TERF2IPQ9NYB0 399 aa19.94■□□□□ 0.78
VRK3-213ENST00000597215 BRD4O60885 1362 aaPredicted RBP19.94■□□□□ 0.78
VRK3-213ENST00000597215 USP6P35125 1406 aa19.93■□□□□ 0.78
VRK3-213ENST00000597215 TNS3Q68CZ2 1445 aa19.93■□□□□ 0.78
VRK3-213ENST00000597215 MON2Q7Z3U7 1717 aa19.93■□□□□ 0.78
VRK3-213ENST00000597215 CD163L1Q9NR16 1453 aa19.93■□□□□ 0.78
VRK3-213ENST00000597215 C11orf95C9JLR9 678 aaPredicted RBP19.93■□□□□ 0.78
VRK3-213ENST00000597215 SPATA31A3Q5VYP0 1347 aa19.93■□□□□ 0.78
VRK3-213ENST00000597215 KIF7Q2M1P5 1343 aa19.92■□□□□ 0.78
VRK3-213ENST00000597215 KTN1Q86UP2 1357 aaKnown RBP19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms