RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 USP19O94966 1318 aa19.41■□□□□ 0.7
UPF1-204ENST00000596842 ZMYND15Q9H091 742 aa19.4■□□□□ 0.7
UPF1-204ENST00000596842 NOS1P29475 1434 aa19.39■□□□□ 0.69
UPF1-204ENST00000596842 ARID3AQ99856 593 aa19.39■□□□□ 0.69
UPF1-204ENST00000596842 EXOSC9Q06265 439 aaKnown RBP19.39■□□□□ 0.69
UPF1-204ENST00000596842 MYH16Q9H6N6 1097 aa19.38■□□□□ 0.69
UPF1-204ENST00000596842 MADDQ8WXG6 1647 aa19.38■□□□□ 0.69
UPF1-204ENST00000596842 ERVK-7P63135 1459 aa19.38■□□□□ 0.69
UPF1-204ENST00000596842 ABCC2Q92887 1545 aa19.37■□□□□ 0.69
UPF1-204ENST00000596842 DZIP1LQ8IYY4 767 aaKnown RBP19.37■□□□□ 0.69
UPF1-204ENST00000596842 SLC24A1O60721 1099 aa19.37■□□□□ 0.69
UPF1-204ENST00000596842 ZKSCAN2Q63HK3 967 aa19.37■□□□□ 0.69
UPF1-204ENST00000596842 STAC3Q96MF2 364 aa19.37■□□□□ 0.69
UPF1-204ENST00000596842 TBC1D2Q9BYX2 928 aa19.36■□□□□ 0.69
UPF1-204ENST00000596842 CLTCL1P53675 1640 aa19.35■□□□□ 0.69
UPF1-204ENST00000596842 FOXD4L1Q9NU39 408 aa19.35■□□□□ 0.69
UPF1-204ENST00000596842 SYNMO15061 1565 aa19.35■□□□□ 0.69
UPF1-204ENST00000596842 ELL2O00472 640 aaPredicted RBP19.35■□□□□ 0.69
UPF1-204ENST00000596842 FBLN1P23142 703 aa19.35■□□□□ 0.69
UPF1-204ENST00000596842 PLXNC1O60486 1568 aa19.34■□□□□ 0.69
UPF1-204ENST00000596842 MINK1Q8N4C8 1332 aaPredicted RBP19.34■□□□□ 0.69
UPF1-204ENST00000596842 LAMC1P11047 1609 aa19.34■□□□□ 0.69
UPF1-204ENST00000596842 HSP90AA2PQ14568 343 aaPredicted RBP19.33■□□□□ 0.68
UPF1-204ENST00000596842 MVPQ14764 893 aaKnown RBP19.32■□□□□ 0.68
UPF1-204ENST00000596842 CHD1O14646 1710 aa19.32■□□□□ 0.68
UPF1-204ENST00000596842 NPC1L1Q9UHC9 1359 aa19.32■□□□□ 0.68
UPF1-204ENST00000596842 LNPKQ9C0E8 428 aa19.32■□□□□ 0.68
UPF1-204ENST00000596842 FANCAO15360 1455 aa19.31■□□□□ 0.68
UPF1-204ENST00000596842 POLR3AO14802 1390 aaPredicted RBP19.31■□□□□ 0.68
UPF1-204ENST00000596842 SSH1Q8WYL5 1049 aa19.31■□□□□ 0.68
UPF1-204ENST00000596842 C22orf23Q9BZE7 217 aa19.31■□□□□ 0.68
UPF1-204ENST00000596842 RSPH6AQ9H0K4 717 aa19.31■□□□□ 0.68
UPF1-204ENST00000596842 HSP90AA1P07900 732 aaKnown RBP19.3■□□□□ 0.68
UPF1-204ENST00000596842 NGEFQ8N5V2 710 aa19.3■□□□□ 0.68
UPF1-204ENST00000596842 NOB1Q9ULX3 412 aaKnown RBP19.3■□□□□ 0.68
UPF1-204ENST00000596842 TRPM2O94759 1503 aa19.3■□□□□ 0.68
UPF1-204ENST00000596842 WDR63Q8IWG1 891 aa19.3■□□□□ 0.68
UPF1-204ENST00000596842 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.3■□□□□ 0.68
UPF1-204ENST00000596842 KDM5AP29375 1690 aaKnown RBP19.29■□□□□ 0.68
UPF1-204ENST00000596842 ABCC1P33527 1531 aa19.29■□□□□ 0.68
UPF1-204ENST00000596842 RIPK4P57078 832 aa19.29■□□□□ 0.68
UPF1-204ENST00000596842 TBC1D32Q96NH3 1257 aa19.29■□□□□ 0.68
UPF1-204ENST00000596842 RNF17Q9BXT8 1623 aaKnown RBP19.29■□□□□ 0.68
UPF1-204ENST00000596842 NPM1P06748 294 aaKnown RBP eCLIP19.29■□□□□ 0.68
UPF1-204ENST00000596842 TRIM27P14373 513 aa19.29■□□□□ 0.68
UPF1-204ENST00000596842 EVC2Q86UK5 1308 aa19.29■□□□□ 0.68
UPF1-204ENST00000596842 ADGRL1O94910 1474 aa19.28■□□□□ 0.68
UPF1-204ENST00000596842 C1orf115Q9H7X2 142 aa19.28■□□□□ 0.68
UPF1-204ENST00000596842 IQGAP1P46940 1657 aa19.28■□□□□ 0.68
UPF1-204ENST00000596842 PTPRTO14522 1441 aa19.28■□□□□ 0.68
UPF1-204ENST00000596842 TMEM57Q8N5G2 664 aa19.26■□□□□ 0.67
UPF1-204ENST00000596842 THUMPD2Q9BTF0 503 aaKnown RBP19.26■□□□□ 0.67
UPF1-204ENST00000596842 C14orf93Q9H972 538 aaKnown RBP19.26■□□□□ 0.67
UPF1-204ENST00000596842 STAG3Q9UJ98 1225 aa19.25■□□□□ 0.67
UPF1-204ENST00000596842 TMPOP42166 694 aaKnown RBP19.25■□□□□ 0.67
UPF1-204ENST00000596842 HSCBQ8IWL3 235 aa19.25■□□□□ 0.67
UPF1-204ENST00000596842 RAPGEF3O95398 923 aa19.24■□□□□ 0.67
UPF1-204ENST00000596842 HMOX1P09601 288 aa19.24■□□□□ 0.67
UPF1-204ENST00000596842 SPHKAPQ2M3C7 1700 aa19.23■□□□□ 0.67
UPF1-204ENST00000596842 ZCCHC11Q5TAX3 1644 aaKnown RBP19.23■□□□□ 0.67
UPF1-204ENST00000596842 ZFYVE16Q7Z3T8 1539 aa19.22■□□□□ 0.67
UPF1-204ENST00000596842 ATF7IPQ6VMQ6 1270 aa19.22■□□□□ 0.67
UPF1-204ENST00000596842 PANK2Q9BZ23 570 aa19.22■□□□□ 0.67
UPF1-204ENST00000596842 NINLQ9Y2I6 1382 aa19.22■□□□□ 0.67
UPF1-204ENST00000596842 MYOM1P52179 1685 aa19.22■□□□□ 0.67
UPF1-204ENST00000596842 GOLGA6L3A6NEY3 463 aa19.22■□□□□ 0.67
UPF1-204ENST00000596842 DDX19BQ9UMR2 479 aa19.22■□□□□ 0.67
UPF1-204ENST00000596842 ATP7AQ04656 1500 aa19.22■□□□□ 0.67
UPF1-204ENST00000596842 ANKRD45Q5TZF3 282 aa19.21■□□□□ 0.67
UPF1-204ENST00000596842 HSP90AB1P08238 724 aaKnown RBP19.21■□□□□ 0.67
UPF1-204ENST00000596842 APBB1O00213 710 aa19.2■□□□□ 0.66
UPF1-204ENST00000596842 RTEL1-TNFRSF6BF6WH68 1400 aa19.2■□□□□ 0.66
UPF1-204ENST00000596842 VGFO15240 615 aaPredicted RBP19.19■□□□□ 0.66
UPF1-204ENST00000596842 MCM4P33991 863 aa19.19■□□□□ 0.66
UPF1-204ENST00000596842 L1TD1Q5T7N2 865 aaKnown RBP19.19■□□□□ 0.66
UPF1-204ENST00000596842 PRAM1Q96QH2 718 aa19.19■□□□□ 0.66
UPF1-204ENST00000596842 ABCA6Q8N139 1617 aa19.19■□□□□ 0.66
UPF1-204ENST00000596842 CLASP1Q7Z460 1538 aa19.19■□□□□ 0.66
UPF1-204ENST00000596842 ANTXR1Q9H6X2 564 aa19.19■□□□□ 0.66
UPF1-204ENST00000596842 PNNQ9H307 717 aaKnown RBP19.18■□□□□ 0.66
UPF1-204ENST00000596842 DIAPH1O60610 1272 aaKnown RBP19.18■□□□□ 0.66
UPF1-204ENST00000596842 TRAK2O60296 914 aa19.17■□□□□ 0.66
UPF1-204ENST00000596842 TRIM35Q9UPQ4 493 aa19.17■□□□□ 0.66
UPF1-204ENST00000596842 CHMP5Q9NZZ3 219 aa19.16■□□□□ 0.66
UPF1-204ENST00000596842 CEP152O94986 1710 aa19.16■□□□□ 0.66
UPF1-204ENST00000596842 PRKAR2BP31323 418 aa19.16■□□□□ 0.66
UPF1-204ENST00000596842 MAP3K4Q9Y6R4 1608 aa19.16■□□□□ 0.66
UPF1-204ENST00000596842 CABP1Q9NZU7 370 aa19.15■□□□□ 0.66
UPF1-204ENST00000596842 IDI1Q13907 227 aa19.15■□□□□ 0.66
UPF1-204ENST00000596842 RRAGDQ9NQL2 400 aaPredicted RBP19.15■□□□□ 0.66
UPF1-204ENST00000596842 IPO8O15397 1037 aaKnown RBP19.15■□□□□ 0.66
UPF1-204ENST00000596842 TERF2IPQ9NYB0 399 aa19.15■□□□□ 0.66
UPF1-204ENST00000596842 XRCC6P12956 609 aaKnown RBP eCLIP19.14■□□□□ 0.65
UPF1-204ENST00000596842 FAM43AQ8N2R8 423 aa19.14■□□□□ 0.65
UPF1-204ENST00000596842 FYB1O15117 783 aa19.14■□□□□ 0.65
UPF1-204ENST00000596842 PHF23Q9BUL5 403 aaPredicted RBP19.13■□□□□ 0.65
UPF1-204ENST00000596842 CCDC27Q2M243 656 aa19.13■□□□□ 0.65
UPF1-204ENST00000596842 TET3O43151 1660 aa19.13■□□□□ 0.65
UPF1-204ENST00000596842 SOX12O15370 315 aa19.13■□□□□ 0.65
UPF1-204ENST00000596842 A0A1W2PP64 1363 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms