RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 DCCP43146 1447 aa11.86□□□□□ -0.51
VRK3-211ENST00000596445 SAFB2Q14151 953 aaKnown RBP eCLIP11.86□□□□□ -0.51
VRK3-211ENST00000596445 EIF3AQ14152 1382 aaKnown RBP11.85□□□□□ -0.51
VRK3-211ENST00000596445 TOM1O60784 492 aa11.85□□□□□ -0.51
VRK3-211ENST00000596445 ATF3P18847 181 aa11.85□□□□□ -0.51
VRK3-211ENST00000596445 UBAP1LF5GYI3 381 aa11.84□□□□□ -0.51
VRK3-211ENST00000596445 CADPS2Q86UW7 1296 aa11.84□□□□□ -0.51
VRK3-211ENST00000596445 QRICH2Q9H0J4 1663 aa11.84□□□□□ -0.51
VRK3-211ENST00000596445 CENPJQ9HC77 1338 aaPredicted RBP11.84□□□□□ -0.51
VRK3-211ENST00000596445 ADGRB2O60241 1585 aa11.84□□□□□ -0.51
VRK3-211ENST00000596445 CDC42BPGQ6DT37 1551 aa11.84□□□□□ -0.51
VRK3-211ENST00000596445 SLAIN2Q9P270 581 aa11.82□□□□□ -0.52
VRK3-211ENST00000596445 MINK1Q8N4C8 1332 aaPredicted RBP11.82□□□□□ -0.52
VRK3-211ENST00000596445 FMN2Q9NZ56 1722 aa11.81□□□□□ -0.52
VRK3-211ENST00000596445 FBXO41Q8TF61 875 aa11.81□□□□□ -0.52
VRK3-211ENST00000596445 HIRIP3Q9BW71 556 aaPredicted RBP11.81□□□□□ -0.52
VRK3-211ENST00000596445 USP47Q96K76 1375 aa11.8□□□□□ -0.52
VRK3-211ENST00000596445 MST1RQ04912 1400 aa11.8□□□□□ -0.52
VRK3-211ENST00000596445 WASLO00401 505 aaPredicted RBP11.79□□□□□ -0.52
VRK3-211ENST00000596445 SBNO2Q9Y2G9 1366 aa11.79□□□□□ -0.52
VRK3-211ENST00000596445 RGPD8O14715 1765 aaPredicted RBP11.78□□□□□ -0.52
VRK3-211ENST00000596445 ST20-MTHFSA0A0A6YYL1 179 aa11.78□□□□□ -0.52
VRK3-211ENST00000596445 ZEB1P37275 1124 aaPredicted RBP11.78□□□□□ -0.52
VRK3-211ENST00000596445 PIP4K2BP78356 416 aa11.78□□□□□ -0.52
VRK3-211ENST00000596445 ROBO1Q9Y6N7 1651 aa11.78□□□□□ -0.52
VRK3-211ENST00000596445 C1orf167Q5SNV9 1468 aa11.77□□□□□ -0.52
VRK3-211ENST00000596445 SLC24A1O60721 1099 aa11.77□□□□□ -0.53
VRK3-211ENST00000596445 SCAF1Q9H7N4 1312 aaKnown RBP11.77□□□□□ -0.53
VRK3-211ENST00000596445 ANKARQ7Z5J8 1434 aa11.77□□□□□ -0.53
VRK3-211ENST00000596445 TULP4Q9NRJ4 1543 aa11.76□□□□□ -0.53
VRK3-211ENST00000596445 USP32Q8NFA0 1604 aa11.76□□□□□ -0.53
VRK3-211ENST00000596445 NUTM2FA1L443 756 aa11.76□□□□□ -0.53
VRK3-211ENST00000596445 EIF4G2P78344 907 aaKnown RBP eCLIP11.76□□□□□ -0.53
VRK3-211ENST00000596445 TESK2Q96S53 571 aa11.76□□□□□ -0.53
VRK3-211ENST00000596445 CDK19Q9BWU1 502 aa11.76□□□□□ -0.53
VRK3-211ENST00000596445 EVC2Q86UK5 1308 aa11.76□□□□□ -0.53
VRK3-211ENST00000596445 BRINP3Q76B58 766 aa11.75□□□□□ -0.53
VRK3-211ENST00000596445 ITSN1Q15811 1721 aa11.74□□□□□ -0.53
VRK3-211ENST00000596445 ESCO1Q5FWF5 840 aa11.74□□□□□ -0.53
VRK3-211ENST00000596445 ORAI2Q96SN7 254 aa11.74□□□□□ -0.53
VRK3-211ENST00000596445 HSPA5P11021 654 aaKnown RBP11.73□□□□□ -0.53
VRK3-211ENST00000596445 ATP7BP35670 1465 aa11.73□□□□□ -0.53
VRK3-211ENST00000596445 SRPK2P78362 688 aaKnown RBP11.73□□□□□ -0.53
VRK3-211ENST00000596445 KIF1AQ12756 1690 aa11.73□□□□□ -0.53
VRK3-211ENST00000596445 NUDT16Q96DE0 195 aaKnown RBP11.73□□□□□ -0.53
VRK3-211ENST00000596445 PRR36Q9H6K5 1346 aa11.73□□□□□ -0.53
VRK3-211ENST00000596445 TOPAZ1Q8N9V7 1692 aa11.72□□□□□ -0.53
VRK3-211ENST00000596445 CABP2Q9NPB3 220 aa11.72□□□□□ -0.53
VRK3-211ENST00000596445 NHSL1Q5SYE7 1610 aa11.71□□□□□ -0.53
VRK3-211ENST00000596445 AHDC1Q5TGY3 1603 aaPredicted RBP11.71□□□□□ -0.53
VRK3-211ENST00000596445 TMF1P82094 1093 aa11.71□□□□□ -0.53
VRK3-211ENST00000596445 PUS7Q96PZ0 661 aaKnown RBP11.71□□□□□ -0.53
VRK3-211ENST00000596445 PHF8Q9UPP1 1060 aa11.71□□□□□ -0.53
VRK3-211ENST00000596445 CCDC61Q9Y6R9 512 aa11.71□□□□□ -0.53
VRK3-211ENST00000596445 PHLPP1O60346 1717 aa11.71□□□□□ -0.54
VRK3-211ENST00000596445 ATAD2Q6PL18 1390 aa11.7□□□□□ -0.54
VRK3-211ENST00000596445 DISP3Q9P2K9 1392 aa11.69□□□□□ -0.54
VRK3-211ENST00000596445 CDCA8Q53HL2 280 aa11.69□□□□□ -0.54
VRK3-211ENST00000596445 ILDR1Q86SU0 546 aaPredicted RBP11.69□□□□□ -0.54
VRK3-211ENST00000596445 PPIP5K1Q6PFW1 1433 aa11.69□□□□□ -0.54
VRK3-211ENST00000596445 NPHP3Q7Z494 1330 aa11.68□□□□□ -0.54
VRK3-211ENST00000596445 PLEKHG3A1L390 1219 aa11.68□□□□□ -0.54
VRK3-211ENST00000596445 FOXO3O43524 673 aa11.68□□□□□ -0.54
VRK3-211ENST00000596445 HSPA1LP34931 641 aa11.68□□□□□ -0.54
VRK3-211ENST00000596445 PMFBP1Q8TBY8 1022 aa11.68□□□□□ -0.54
VRK3-211ENST00000596445 COL16A1Q07092 1604 aaPredicted RBP11.68□□□□□ -0.54
VRK3-211ENST00000596445 NGDNQ8NEJ9 315 aaKnown RBP11.67□□□□□ -0.54
VRK3-211ENST00000596445 DDX17Q92841 729 aaKnown RBP11.67□□□□□ -0.54
VRK3-211ENST00000596445 CABP1Q9NZU7 370 aa11.67□□□□□ -0.54
VRK3-211ENST00000596445 POLR3AO14802 1390 aaPredicted RBP11.67□□□□□ -0.54
VRK3-211ENST00000596445 SOS2Q07890 1332 aaPredicted RBP11.66□□□□□ -0.54
VRK3-211ENST00000596445 ACEP12821 1306 aa11.65□□□□□ -0.54
VRK3-211ENST00000596445 PXDNQ92626 1479 aa11.65□□□□□ -0.54
VRK3-211ENST00000596445 PSME1Q06323 249 aa11.65□□□□□ -0.54
VRK3-211ENST00000596445 KRT28Q7Z3Y7 464 aa11.65□□□□□ -0.54
VRK3-211ENST00000596445 NINLQ9Y2I6 1382 aa11.65□□□□□ -0.55
VRK3-211ENST00000596445 AKAP12Q02952 1782 aa11.64□□□□□ -0.55
VRK3-211ENST00000596445 XPCQ01831 940 aaPredicted RBP11.64□□□□□ -0.55
VRK3-211ENST00000596445 TMC1Q8TDI8 760 aa11.64□□□□□ -0.55
VRK3-211ENST00000596445 LRRC59Q96AG4 307 aaKnown RBP11.64□□□□□ -0.55
VRK3-211ENST00000596445 TRPM3Q9HCF6 1732 aaPredicted RBP11.63□□□□□ -0.55
VRK3-211ENST00000596445 MYOM1P52179 1685 aa11.63□□□□□ -0.55
VRK3-211ENST00000596445 ZNF692Q9BU19 519 aaPredicted RBP11.63□□□□□ -0.55
VRK3-211ENST00000596445 SLC12A5Q9H2X9 1139 aa11.63□□□□□ -0.55
VRK3-211ENST00000596445 CPSF1Q10570 1443 aaKnown RBP11.62□□□□□ -0.55
VRK3-211ENST00000596445 C11orf95C9JLR9 678 aaPredicted RBP11.62□□□□□ -0.55
VRK3-211ENST00000596445 TERF2IPQ9NYB0 399 aa11.62□□□□□ -0.55
VRK3-211ENST00000596445 SBNO1A3KN83 1393 aa11.62□□□□□ -0.55
VRK3-211ENST00000596445 SHPRHQ149N8 1683 aa11.62□□□□□ -0.55
VRK3-211ENST00000596445 MON2Q7Z3U7 1717 aa11.61□□□□□ -0.55
VRK3-211ENST00000596445 HDGFL2Q7Z4V5 671 aaPredicted RBP11.61□□□□□ -0.55
VRK3-211ENST00000596445 BRD4O60885 1362 aaPredicted RBP11.61□□□□□ -0.55
VRK3-211ENST00000596445 JCADQ9P266 1359 aa11.61□□□□□ -0.55
VRK3-211ENST00000596445 CD163L1Q9NR16 1453 aa11.61□□□□□ -0.55
VRK3-211ENST00000596445 SPATA31A3Q5VYP0 1347 aa11.6□□□□□ -0.55
VRK3-211ENST00000596445 USP6P35125 1406 aa11.6□□□□□ -0.55
VRK3-211ENST00000596445 TNS3Q68CZ2 1445 aa11.6□□□□□ -0.55
VRK3-211ENST00000596445 ALS2Q96Q42 1657 aa11.6□□□□□ -0.55
VRK3-211ENST00000596445 KTN1Q86UP2 1357 aaKnown RBP11.6□□□□□ -0.55
VRK3-211ENST00000596445 POLR3GLQ9BT43 218 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms