RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 RBM6P78332 1123 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-209ENST00000595803 EP400Q96L91 3159 aa18.34■□□□□ 0.53
SHKBP1-209ENST00000595803 TRPM1Q7Z4N2 1603 aa18.34■□□□□ 0.53
SHKBP1-209ENST00000595803 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-209ENST00000595803 NRXN1Q9ULB1 1477 aa18.33■□□□□ 0.52
SHKBP1-209ENST00000595803 NCOA3Q9Y6Q9 1424 aa18.32■□□□□ 0.52
SHKBP1-209ENST00000595803 QTRT2Q9H974 415 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-209ENST00000595803 GPRASP1Q5JY77 1395 aa18.3■□□□□ 0.52
SHKBP1-209ENST00000595803 USP47Q96K76 1375 aa18.3■□□□□ 0.52
SHKBP1-209ENST00000595803 BCANQ96GW7 911 aa18.3■□□□□ 0.52
SHKBP1-209ENST00000595803 C8orf37Q96NL8 207 aa18.3■□□□□ 0.52
SHKBP1-209ENST00000595803 C14orf37Q86TY3 774 aa18.29■□□□□ 0.52
SHKBP1-209ENST00000595803 CADPS2Q86UW7 1296 aa18.29■□□□□ 0.52
SHKBP1-209ENST00000595803 PIK3C2GO75747 1445 aa18.29■□□□□ 0.52
SHKBP1-209ENST00000595803 KIAA1210Q9ULL0 1709 aa18.29■□□□□ 0.52
SHKBP1-209ENST00000595803 BRINP3Q76B58 766 aa18.28■□□□□ 0.52
SHKBP1-209ENST00000595803 ASXL1Q8IXJ9 1541 aa18.27■□□□□ 0.51
SHKBP1-209ENST00000595803 ST20-MTHFSA0A0A6YYL1 179 aa18.26■□□□□ 0.51
SHKBP1-209ENST00000595803 PLEKHG1Q9ULL1 1385 aa18.26■□□□□ 0.51
SHKBP1-209ENST00000595803 ATF3P18847 181 aa18.25■□□□□ 0.51
SHKBP1-209ENST00000595803 TMEM132EQ6IEE7 984 aa18.25■□□□□ 0.51
SHKBP1-209ENST00000595803 LAMC1P11047 1609 aa18.24■□□□□ 0.51
SHKBP1-209ENST00000595803 NHSL1Q5SYE7 1610 aa18.24■□□□□ 0.51
SHKBP1-209ENST00000595803 C19orf44Q9H6X5 657 aa18.24■□□□□ 0.51
SHKBP1-209ENST00000595803 NGLY1Q96IV0 654 aa18.23■□□□□ 0.51
SHKBP1-209ENST00000595803 LRP5O75197 1615 aa18.22■□□□□ 0.51
SHKBP1-209ENST00000595803 PNPLA6Q8IY17 1366 aa18.21■□□□□ 0.51
SHKBP1-209ENST00000595803 TRAK1Q9UPV9 953 aa18.21■□□□□ 0.51
SHKBP1-209ENST00000595803 EIF3AQ14152 1382 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-209ENST00000595803 DIEXFQ68CQ4 756 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-209ENST00000595803 STK26Q9P289 416 aa18.19■□□□□ 0.5
SHKBP1-209ENST00000595803 DCCP43146 1447 aa18.18■□□□□ 0.5
SHKBP1-209ENST00000595803 SLC24A1O60721 1099 aa18.17■□□□□ 0.5
SHKBP1-209ENST00000595803 LRRC59Q96AG4 307 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-209ENST00000595803 C11orf95C9JLR9 678 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-209ENST00000595803 TBX22Q9Y458 520 aa18.16■□□□□ 0.5
SHKBP1-209ENST00000595803 MST1RQ04912 1400 aa18.15■□□□□ 0.5
SHKBP1-209ENST00000595803 ADAMTS13Q76LX8 1427 aa18.15■□□□□ 0.5
SHKBP1-209ENST00000595803 ADAMTS2O95450 1211 aa18.15■□□□□ 0.5
SHKBP1-209ENST00000595803 TMF1P82094 1093 aa18.15■□□□□ 0.5
SHKBP1-209ENST00000595803 DDX10Q13206 875 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-209ENST00000595803 CCDC125Q86Z20 511 aa18.15■□□□□ 0.5
SHKBP1-209ENST00000595803 POLR3GLQ9BT43 218 aa18.15■□□□□ 0.5
SHKBP1-209ENST00000595803 ADGRB1O14514 1584 aa18.15■□□□□ 0.5
SHKBP1-209ENST00000595803 TESK2Q96S53 571 aa18.13■□□□□ 0.49
SHKBP1-209ENST00000595803 WASHC2AQ641Q2 1341 aa18.13■□□□□ 0.49
SHKBP1-209ENST00000595803 CENPJQ9HC77 1338 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-209ENST00000595803 CCDC7Q96M83 1385 aa18.13■□□□□ 0.49
SHKBP1-209ENST00000595803 ATRNO75882 1429 aa18.13■□□□□ 0.49
SHKBP1-209ENST00000595803 YTHDC2Q9H6S0 1430 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-209ENST00000595803 DDX17Q92841 729 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-209ENST00000595803 POGKQ9P215 609 aa18.12■□□□□ 0.49
SHKBP1-209ENST00000595803 USP21Q9UK80 565 aa18.12■□□□□ 0.49
SHKBP1-209ENST00000595803 TRPC5Q9UL62 973 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-209ENST00000595803 PIK3R4Q99570 1358 aa18.12■□□□□ 0.49
SHKBP1-209ENST00000595803 KIF7Q2M1P5 1343 aa18.11■□□□□ 0.49
SHKBP1-209ENST00000595803 LRPPRCP42704 1394 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-209ENST00000595803 METP08581 1390 aa18.1■□□□□ 0.49
SHKBP1-209ENST00000595803 CDCA8Q53HL2 280 aa18.1■□□□□ 0.49
SHKBP1-209ENST00000595803 NRXN3Q9Y4C0 1643 aa18.09■□□□□ 0.49
SHKBP1-209ENST00000595803 PTPRUQ92729 1446 aa18.09■□□□□ 0.49
SHKBP1-209ENST00000595803 ABCC11Q96J66 1382 aa18.08■□□□□ 0.49
SHKBP1-209ENST00000595803 SIRT1Q96EB6 747 aa18.08■□□□□ 0.48
SHKBP1-209ENST00000595803 PRAM1Q96QH2 718 aa18.08■□□□□ 0.48
SHKBP1-209ENST00000595803 BLMP54132 1417 aaPredicted RBP18.07■□□□□ 0.48
SHKBP1-209ENST00000595803 XRN1Q8IZH2 1706 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-209ENST00000595803 SAFB2Q14151 953 aaKnown RBP eCLIP18.05■□□□□ 0.48
SHKBP1-209ENST00000595803 FNBP4Q8N3X1 1017 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-209ENST00000595803 AMOTL2Q9Y2J4 779 aa18.05■□□□□ 0.48
SHKBP1-209ENST00000595803 PTCH1Q13635 1447 aa18.05■□□□□ 0.48
SHKBP1-209ENST00000595803 WAPLQ7Z5K2 1190 aa18.04■□□□□ 0.48
SHKBP1-209ENST00000595803 SBNO2Q9Y2G9 1366 aa18.03■□□□□ 0.48
SHKBP1-209ENST00000595803 DLC1Q96QB1 1528 aa18.03■□□□□ 0.48
SHKBP1-209ENST00000595803 DEFB132Q7Z7B7 95 aa18.02■□□□□ 0.48
SHKBP1-209ENST00000595803 EVC2Q86UK5 1308 aa18.01■□□□□ 0.47
SHKBP1-209ENST00000595803 ARHGEF28Q8N1W1 1705 aaKnown RBP18.01■□□□□ 0.47
SHKBP1-209ENST00000595803 MINK1Q8N4C8 1332 aaPredicted RBP18■□□□□ 0.47
SHKBP1-209ENST00000595803 ADGRL3Q9HAR2 1447 aa18■□□□□ 0.47
SHKBP1-209ENST00000595803 NALCNQ8IZF0 1738 aa18■□□□□ 0.47
SHKBP1-209ENST00000595803 BCL9LQ86UU0 1499 aa18■□□□□ 0.47
SHKBP1-209ENST00000595803 COL22A1Q8NFW1 1626 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-209ENST00000595803 QRICH2Q9H0J4 1663 aa17.99■□□□□ 0.47
SHKBP1-209ENST00000595803 PUS7Q96PZ0 661 aaKnown RBP17.98■□□□□ 0.47
SHKBP1-209ENST00000595803 TECPR2O15040 1411 aa17.98■□□□□ 0.47
SHKBP1-209ENST00000595803 C1orf167Q5SNV9 1468 aa17.96■□□□□ 0.47
SHKBP1-209ENST00000595803 PLEKHH1Q9ULM0 1364 aa17.96■□□□□ 0.47
SHKBP1-209ENST00000595803 SOS2Q07890 1332 aaPredicted RBP17.96■□□□□ 0.46
SHKBP1-209ENST00000595803 KNDC1Q76NI1 1749 aa17.95■□□□□ 0.46
SHKBP1-209ENST00000595803 ROBO2Q9HCK4 1378 aa17.95■□□□□ 0.46
SHKBP1-209ENST00000595803 PSDA5PKW4 1024 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-209ENST00000595803 SRPK2P78362 688 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-209ENST00000595803 GJD4Q96KN9 370 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-209ENST00000595803 CDK19Q9BWU1 502 aa17.95■□□□□ 0.46
SHKBP1-209ENST00000595803 MARF1Q9Y4F3 1742 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-209ENST00000595803 ANP32CO43423 234 aa17.94■□□□□ 0.46
SHKBP1-209ENST00000595803 SF3B2Q13435 895 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-209ENST00000595803 CABP2Q9NPB3 220 aa17.94■□□□□ 0.46
SHKBP1-209ENST00000595803 GLI3P10071 1580 aa17.94■□□□□ 0.46
SHKBP1-209ENST00000595803 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-209ENST00000595803 MIER1Q8N108 512 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms