RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 PHLPP1O60346 1717 aa15.7■□□□□ 0.1
VPS4B-207ENST00000591519 METP08581 1390 aa15.7■□□□□ 0.1
VPS4B-207ENST00000591519 POTEAQ6S8J7 498 aa15.69■□□□□ 0.1
VPS4B-207ENST00000591519 DCCP43146 1447 aa15.68■□□□□ 0.1
VPS4B-207ENST00000591519 CLTCL1P53675 1640 aa15.68■□□□□ 0.1
VPS4B-207ENST00000591519 XRN1Q8IZH2 1706 aaKnown RBP15.68■□□□□ 0.1
VPS4B-207ENST00000591519 NEXMIFQ5QGS0 1516 aa15.68■□□□□ 0.1
VPS4B-207ENST00000591519 VGFO15240 615 aaPredicted RBP15.67■□□□□ 0.1
VPS4B-207ENST00000591519 TRIM52Q96A61 297 aa15.67■□□□□ 0.1
VPS4B-207ENST00000591519 COL16A1Q07092 1604 aaPredicted RBP15.67■□□□□ 0.1
VPS4B-207ENST00000591519 SPATA31A6Q5VVP1 1343 aa15.67■□□□□ 0.1
VPS4B-207ENST00000591519 RPGRIP1LQ68CZ1 1315 aa15.67■□□□□ 0.1
VPS4B-207ENST00000591519 BRINP3Q76B58 766 aa15.66■□□□□ 0.1
VPS4B-207ENST00000591519 KIF1BO60333 1816 aa15.66■□□□□ 0.1
VPS4B-207ENST00000591519 AHDC1Q5TGY3 1603 aaPredicted RBP15.65■□□□□ 0.1
VPS4B-207ENST00000591519 PRR29P0C7W0 189 aa15.64■□□□□ 0.09
VPS4B-207ENST00000591519 MST1RQ04912 1400 aa15.62■□□□□ 0.09
VPS4B-207ENST00000591519 ADGRL3Q9HAR2 1447 aa15.6■□□□□ 0.09
VPS4B-207ENST00000591519 PRAG1Q86YV5 1406 aa15.6■□□□□ 0.09
VPS4B-207ENST00000591519 SETD5Q9C0A6 1442 aa15.6■□□□□ 0.09
VPS4B-207ENST00000591519 SHPRHQ149N8 1683 aa15.59■□□□□ 0.09
VPS4B-207ENST00000591519 LRP6O75581 1613 aa15.58■□□□□ 0.09
VPS4B-207ENST00000591519 LRRC59Q96AG4 307 aaKnown RBP15.58■□□□□ 0.08
VPS4B-207ENST00000591519 ASXL1Q8IXJ9 1541 aa15.58■□□□□ 0.08
VPS4B-207ENST00000591519 C19orf67A6NJJ6 358 aa15.57■□□□□ 0.08
VPS4B-207ENST00000591519 ZNF772Q68DY9 489 aaPredicted RBP15.57■□□□□ 0.08
VPS4B-207ENST00000591519 PTCH1Q13635 1447 aa15.57■□□□□ 0.08
VPS4B-207ENST00000591519 SETD1AO15047 1707 aaKnown RBP15.57■□□□□ 0.08
VPS4B-207ENST00000591519 MPHOSPH9Q99550 1183 aa15.56■□□□□ 0.08
VPS4B-207ENST00000591519 ACIN1Q9UKV3 1341 aaKnown RBP15.56■□□□□ 0.08
VPS4B-207ENST00000591519 ROBO2Q9HCK4 1378 aa15.55■□□□□ 0.08
VPS4B-207ENST00000591519 PPLO60437 1756 aa15.54■□□□□ 0.08
VPS4B-207ENST00000591519 NHSL1Q5SYE7 1610 aa15.54■□□□□ 0.08
VPS4B-207ENST00000591519 MEX3CQ5U5Q3 659 aaKnown RBP15.54■□□□□ 0.08
VPS4B-207ENST00000591519 NALCNQ8IZF0 1738 aa15.54■□□□□ 0.08
VPS4B-207ENST00000591519 C1orf167Q5SNV9 1468 aa15.53■□□□□ 0.08
VPS4B-207ENST00000591519 CCDC144AA2RUR9 1427 aa15.52■□□□□ 0.08
VPS4B-207ENST00000591519 SPATA31E1Q6ZUB1 1445 aa15.52■□□□□ 0.08
VPS4B-207ENST00000591519 ADGRF5Q8IZF2 1346 aa15.52■□□□□ 0.08
VPS4B-207ENST00000591519 ANKRD30BQ9BXX2 1392 aa15.51■□□□□ 0.07
VPS4B-207ENST00000591519 NUTM2BA6NNL0 878 aaPredicted RBP15.51■□□□□ 0.07
VPS4B-207ENST00000591519 NUTM2EB1AL46 878 aaPredicted RBP15.51■□□□□ 0.07
VPS4B-207ENST00000591519 NUTM2AQ8IVF1 878 aaPredicted RBP15.51■□□□□ 0.07
VPS4B-207ENST00000591519 DDX17Q92841 729 aaKnown RBP15.51■□□□□ 0.07
VPS4B-207ENST00000591519 LAMC1P11047 1609 aa15.5■□□□□ 0.07
VPS4B-207ENST00000591519 SOS2Q07890 1332 aaPredicted RBP15.5■□□□□ 0.07
VPS4B-207ENST00000591519 RGL3Q3MIN7 710 aa15.5■□□□□ 0.07
VPS4B-207ENST00000591519 ORAI2Q96SN7 254 aa15.5■□□□□ 0.07
VPS4B-207ENST00000591519 PNPLA6Q8IY17 1366 aa15.49■□□□□ 0.07
VPS4B-207ENST00000591519 RXRBP28702 533 aa15.48■□□□□ 0.07
VPS4B-207ENST00000591519 ABCC11Q96J66 1382 aa15.48■□□□□ 0.07
VPS4B-207ENST00000591519 AFF2P51816 1311 aa15.46■□□□□ 0.07
VPS4B-207ENST00000591519 TECPR2O15040 1411 aa15.46■□□□□ 0.07
VPS4B-207ENST00000591519 SIRT1Q96EB6 747 aa15.46■□□□□ 0.07
VPS4B-207ENST00000591519 LRPPRCP42704 1394 aaKnown RBP15.46■□□□□ 0.07
VPS4B-207ENST00000591519 IFT172Q9UG01 1749 aa15.45■□□□□ 0.06
VPS4B-207ENST00000591519 CDK12Q9NYV4 1490 aaPredicted RBP15.45■□□□□ 0.06
VPS4B-207ENST00000591519 WAPLQ7Z5K2 1190 aa15.44■□□□□ 0.06
VPS4B-207ENST00000591519 C14orf93Q9H972 538 aaKnown RBP15.44■□□□□ 0.06
VPS4B-207ENST00000591519 PIK3C2GO75747 1445 aa15.43■□□□□ 0.06
VPS4B-207ENST00000591519 TMEM132EQ6IEE7 984 aa15.43■□□□□ 0.06
VPS4B-207ENST00000591519 C8orf37Q96NL8 207 aa15.43■□□□□ 0.06
VPS4B-207ENST00000591519 QTRT2Q9H974 415 aaKnown RBP15.43■□□□□ 0.06
VPS4B-207ENST00000591519 STK26Q9P289 416 aa15.43■□□□□ 0.06
VPS4B-207ENST00000591519 CDC42BPGQ6DT37 1551 aa15.42■□□□□ 0.06
VPS4B-207ENST00000591519 ESCO1Q5FWF5 840 aa15.42■□□□□ 0.06
VPS4B-207ENST00000591519 UPF1Q92900 1129 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS4B-207ENST00000591519 NPHP3Q7Z494 1330 aa15.42■□□□□ 0.06
VPS4B-207ENST00000591519 RBM6P78332 1123 aaKnown RBP15.41■□□□□ 0.06
VPS4B-207ENST00000591519 NGLY1Q96IV0 654 aa15.41■□□□□ 0.06
VPS4B-207ENST00000591519 FNBP4Q8N3X1 1017 aaPredicted RBP15.4■□□□□ 0.06
VPS4B-207ENST00000591519 YTHDC2Q9H6S0 1430 aaKnown RBP15.4■□□□□ 0.06
VPS4B-207ENST00000591519 NRXN1Q9ULB1 1477 aa15.4■□□□□ 0.06
VPS4B-207ENST00000591519 FOXO3O43524 673 aa15.39■□□□□ 0.05
VPS4B-207ENST00000591519 GABBR2O75899 941 aa15.39■□□□□ 0.05
VPS4B-207ENST00000591519 ADAMTS2O95450 1211 aa15.39■□□□□ 0.05
VPS4B-207ENST00000591519 PLEKHH1Q9ULM0 1364 aa15.38■□□□□ 0.05
VPS4B-207ENST00000591519 KNDC1Q76NI1 1749 aa15.38■□□□□ 0.05
VPS4B-207ENST00000591519 FARP1Q9Y4F1 1045 aaPredicted RBP15.38■□□□□ 0.05
VPS4B-207ENST00000591519 COL22A1Q8NFW1 1626 aaPredicted RBP15.38■□□□□ 0.05
VPS4B-207ENST00000591519 PXDNQ92626 1479 aa15.38■□□□□ 0.05
VPS4B-207ENST00000591519 SPDYE4A6NLX3 237 aa15.37■□□□□ 0.05
VPS4B-207ENST00000591519 HRCP23327 699 aa15.37■□□□□ 0.05
VPS4B-207ENST00000591519 CFAP70Q5T0N1 1121 aa15.37■□□□□ 0.05
VPS4B-207ENST00000591519 DHX57Q6P158 1386 aaKnown RBP15.36■□□□□ 0.05
VPS4B-207ENST00000591519 RAB3GAP2Q9H2M9 1393 aa15.36■□□□□ 0.05
VPS4B-207ENST00000591519 MYOM2P54296 1465 aa15.36■□□□□ 0.05
VPS4B-207ENST00000591519 USP21Q9UK80 565 aa15.35■□□□□ 0.05
VPS4B-207ENST00000591519 TRPC5Q9UL62 973 aaPredicted RBP15.35■□□□□ 0.05
VPS4B-207ENST00000591519 NUTM2FA1L443 756 aa15.34■□□□□ 0.05
VPS4B-207ENST00000591519 CD44P16070 742 aaKnown RBP15.33■□□□□ 0.04
VPS4B-207ENST00000591519 STAC3Q96MF2 364 aa15.33■□□□□ 0.04
VPS4B-207ENST00000591519 FMN2Q9NZ56 1722 aa15.32■□□□□ 0.04
VPS4B-207ENST00000591519 XPCQ01831 940 aaPredicted RBP15.32■□□□□ 0.04
VPS4B-207ENST00000591519 SPATA31A3Q5VYP0 1347 aa15.32■□□□□ 0.04
VPS4B-207ENST00000591519 RGS12O14924 1447 aa15.32■□□□□ 0.04
VPS4B-207ENST00000591519 KRT28Q7Z3Y7 464 aa15.31■□□□□ 0.04
VPS4B-207ENST00000591519 ATRNO75882 1429 aa15.3■□□□□ 0.04
VPS4B-207ENST00000591519 BCL9LQ86UU0 1499 aa15.3■□□□□ 0.04
VPS4B-207ENST00000591519 PRAM1Q96QH2 718 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms