RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 CFAP65Q6ZU64 1925 aaKnown RBP14.29□□□□□ -0.12
ZNF540-208ENST00000589857 MYOM2P54296 1465 aa14.29□□□□□ -0.12
ZNF540-208ENST00000589857 ROBO1Q9Y6N7 1651 aa14.29□□□□□ -0.12
ZNF540-208ENST00000589857 SMG6Q86US8 1419 aaKnown RBP14.28□□□□□ -0.12
ZNF540-208ENST00000589857 RBM33Q96EV2 1170 aaKnown RBP14.28□□□□□ -0.12
ZNF540-208ENST00000589857 TBX22Q9Y458 520 aa14.28□□□□□ -0.12
ZNF540-208ENST00000589857 PARD3Q8TEW0 1356 aa14.27□□□□□ -0.12
ZNF540-208ENST00000589857 PLEKHG1Q9ULL1 1385 aa14.27□□□□□ -0.12
ZNF540-208ENST00000589857 NBPF1Q3BBV0 1214 aa14.27□□□□□ -0.13
ZNF540-208ENST00000589857 CCDC184Q52MB2 194 aa14.27□□□□□ -0.13
ZNF540-208ENST00000589857 C19orf44Q9H6X5 657 aa14.27□□□□□ -0.13
ZNF540-208ENST00000589857 NOS1P29475 1434 aa14.26□□□□□ -0.13
ZNF540-208ENST00000589857 TESK2Q96S53 571 aa14.26□□□□□ -0.13
ZNF540-208ENST00000589857 KIAA1210Q9ULL0 1709 aa14.25□□□□□ -0.13
ZNF540-208ENST00000589857 RXRBP28702 533 aa14.25□□□□□ -0.13
ZNF540-208ENST00000589857 PNISRQ8TF01 805 aaKnown RBP14.25□□□□□ -0.13
ZNF540-208ENST00000589857 CLTCL1P53675 1640 aa14.25□□□□□ -0.13
ZNF540-208ENST00000589857 ADGRB3O60242 1522 aa14.25□□□□□ -0.13
ZNF540-208ENST00000589857 XIRP1Q702N8 1843 aaKnown RBP14.25□□□□□ -0.13
ZNF540-208ENST00000589857 LRPPRCP42704 1394 aaKnown RBP14.24□□□□□ -0.13
ZNF540-208ENST00000589857 PIK3R4Q99570 1358 aa14.23□□□□□ -0.13
ZNF540-208ENST00000589857 NWD1Q149M9 1564 aa14.23□□□□□ -0.13
ZNF540-208ENST00000589857 CHGAP10645 457 aaKnown RBP14.23□□□□□ -0.13
ZNF540-208ENST00000589857 PIAS4Q8N2W9 510 aaPredicted RBP14.23□□□□□ -0.13
ZNF540-208ENST00000589857 PPP4R2Q9NY27 417 aa14.23□□□□□ -0.13
ZNF540-208ENST00000589857 NUDCQ9Y266 331 aa14.23□□□□□ -0.13
ZNF540-208ENST00000589857 RPGRIP1LQ68CZ1 1315 aa14.22□□□□□ -0.13
ZNF540-208ENST00000589857 PHLPP1O60346 1717 aa14.22□□□□□ -0.13
ZNF540-208ENST00000589857 MYT1Q01538 1121 aa14.22□□□□□ -0.13
ZNF540-208ENST00000589857 PDE3BQ13370 1112 aa14.22□□□□□ -0.13
ZNF540-208ENST00000589857 UPF1Q92900 1129 aaKnown RBP eCLIP14.22□□□□□ -0.13
ZNF540-208ENST00000589857 RIMS2Q9UQ26 1411 aa14.22□□□□□ -0.13
ZNF540-208ENST00000589857 PER1O15534 1290 aaPredicted RBP14.19□□□□□ -0.14
ZNF540-208ENST00000589857 ADRA2BP18089 450 aa14.19□□□□□ -0.14
ZNF540-208ENST00000589857 NPC1L1Q9UHC9 1359 aa14.19□□□□□ -0.14
ZNF540-208ENST00000589857 LRRC59Q96AG4 307 aaKnown RBP14.18□□□□□ -0.14
ZNF540-208ENST00000589857 PANK3Q9H999 370 aa14.18□□□□□ -0.14
ZNF540-208ENST00000589857 TSHZ2Q9NRE2 1034 aa14.18□□□□□ -0.14
ZNF540-208ENST00000589857 KNSTRNQ9Y448 316 aa14.18□□□□□ -0.14
ZNF540-208ENST00000589857 NRXN1Q9ULB1 1477 aa14.18□□□□□ -0.14
ZNF540-208ENST00000589857 ZFYVE9O95405 1425 aa14.17□□□□□ -0.14
ZNF540-208ENST00000589857 SBNO2Q9Y2G9 1366 aa14.17□□□□□ -0.14
ZNF540-208ENST00000589857 NUTM2BA6NNL0 878 aaPredicted RBP14.16□□□□□ -0.14
ZNF540-208ENST00000589857 NUTM2EB1AL46 878 aaPredicted RBP14.16□□□□□ -0.14
ZNF540-208ENST00000589857 NUTM2AQ8IVF1 878 aaPredicted RBP14.16□□□□□ -0.14
ZNF540-208ENST00000589857 AMOTL2Q9Y2J4 779 aa14.16□□□□□ -0.14
ZNF540-208ENST00000589857 DIP2AQ14689 1571 aa14.15□□□□□ -0.14
ZNF540-208ENST00000589857 SETBP1Q9Y6X0 1596 aa14.15□□□□□ -0.14
ZNF540-208ENST00000589857 CDK12Q9NYV4 1490 aaPredicted RBP14.15□□□□□ -0.14
ZNF540-208ENST00000589857 NGLY1Q96IV0 654 aa14.15□□□□□ -0.14
ZNF540-208ENST00000589857 COL16A1Q07092 1604 aaPredicted RBP14.14□□□□□ -0.15
ZNF540-208ENST00000589857 DCCP43146 1447 aa14.14□□□□□ -0.15
ZNF540-208ENST00000589857 KIF1BO60333 1816 aa14.13□□□□□ -0.15
ZNF540-208ENST00000589857 AHDC1Q5TGY3 1603 aaPredicted RBP14.13□□□□□ -0.15
ZNF540-208ENST00000589857 RBM6P78332 1123 aaKnown RBP14.13□□□□□ -0.15
ZNF540-208ENST00000589857 CNGB1Q14028 1251 aaPredicted RBP14.13□□□□□ -0.15
ZNF540-208ENST00000589857 BRINP3Q76B58 766 aa14.13□□□□□ -0.15
ZNF540-208ENST00000589857 CHD2O14647 1828 aaKnown RBP14.13□□□□□ -0.15
ZNF540-208ENST00000589857 RNF123Q5XPI4 1314 aa14.13□□□□□ -0.15
ZNF540-208ENST00000589857 AFF2P51816 1311 aa14.12□□□□□ -0.15
ZNF540-208ENST00000589857 ASXL1Q8IXJ9 1541 aa14.11□□□□□ -0.15
ZNF540-208ENST00000589857 POTEDQ86YR6 584 aa14.11□□□□□ -0.15
ZNF540-208ENST00000589857 LRP6O75581 1613 aa14.11□□□□□ -0.15
ZNF540-208ENST00000589857 PIK3C2GO75747 1445 aa14.1□□□□□ -0.15
ZNF540-208ENST00000589857 BLMP54132 1417 aaPredicted RBP14.1□□□□□ -0.15
ZNF540-208ENST00000589857 CC2D1BQ5T0F9 858 aaKnown RBP14.1□□□□□ -0.15
ZNF540-208ENST00000589857 NUTM2DQ5VT03 806 aaPredicted RBP14.1□□□□□ -0.15
ZNF540-208ENST00000589857 QTRT2Q9H974 415 aaKnown RBP14.1□□□□□ -0.15
ZNF540-208ENST00000589857 ADAMTS13Q76LX8 1427 aa14.09□□□□□ -0.15
ZNF540-208ENST00000589857 VGFO15240 615 aaPredicted RBP14.09□□□□□ -0.15
ZNF540-208ENST00000589857 C8orf37Q96NL8 207 aa14.09□□□□□ -0.15
ZNF540-208ENST00000589857 PUS7Q96PZ0 661 aaKnown RBP14.09□□□□□ -0.15
ZNF540-208ENST00000589857 SHPRHQ149N8 1683 aa14.09□□□□□ -0.15
ZNF540-208ENST00000589857 TMEM131LA2VDJ0 1609 aa14.08□□□□□ -0.15
ZNF540-208ENST00000589857 SETD1AO15047 1707 aaKnown RBP14.08□□□□□ -0.16
ZNF540-208ENST00000589857 IFT172Q9UG01 1749 aa14.08□□□□□ -0.16
ZNF540-208ENST00000589857 WDR43Q15061 677 aaKnown RBP eCLIP14.08□□□□□ -0.16
ZNF540-208ENST00000589857 NGEFQ8N5V2 710 aa14.08□□□□□ -0.16
ZNF540-208ENST00000589857 ADGRF5Q8IZF2 1346 aa14.08□□□□□ -0.16
ZNF540-208ENST00000589857 CENPJQ9HC77 1338 aaPredicted RBP14.08□□□□□ -0.16
ZNF540-208ENST00000589857 CFAP70Q5T0N1 1121 aa14.07□□□□□ -0.16
ZNF540-208ENST00000589857 C14orf93Q9H972 538 aaKnown RBP14.07□□□□□ -0.16
ZNF540-208ENST00000589857 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.07□□□□□ -0.16
ZNF540-208ENST00000589857 IRX6P78412 446 aaPredicted RBP14.05□□□□□ -0.16
ZNF540-208ENST00000589857 AMER1Q5JTC6 1135 aaPredicted RBP14.05□□□□□ -0.16
ZNF540-208ENST00000589857 ATAD2Q6PL18 1390 aa14.05□□□□□ -0.16
ZNF540-208ENST00000589857 PPP2R1AP30153 589 aa14.04□□□□□ -0.16
ZNF540-208ENST00000589857 ZRANB1Q9UGI0 708 aa14.04□□□□□ -0.16
ZNF540-208ENST00000589857 TRPC5Q9UL62 973 aaPredicted RBP14.04□□□□□ -0.16
ZNF540-208ENST00000589857 CCDC125Q86Z20 511 aa14.03□□□□□ -0.16
ZNF540-208ENST00000589857 MST1RQ04912 1400 aa14.01□□□□□ -0.17
ZNF540-208ENST00000589857 NINLQ9Y2I6 1382 aa14.01□□□□□ -0.17
ZNF540-208ENST00000589857 USP21Q9UK80 565 aa14.01□□□□□ -0.17
ZNF540-208ENST00000589857 RCAN3Q9UKA8 241 aa14.01□□□□□ -0.17
ZNF540-208ENST00000589857 PNPLA6Q8IY17 1366 aa14□□□□□ -0.17
ZNF540-208ENST00000589857 ADAMTS2O95450 1211 aa14□□□□□ -0.17
ZNF540-208ENST00000589857 RRP1P56182 461 aaKnown RBP14□□□□□ -0.17
ZNF540-208ENST00000589857 PPLO60437 1756 aa14□□□□□ -0.17
ZNF540-208ENST00000589857 PTPRUQ92729 1446 aa13.99□□□□□ -0.17
ZNF540-208ENST00000589857 EVC2Q86UK5 1308 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms