RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 CERKQ8TCT0 537 aa14.74□□□□□ -0.05
VPS4B-204ENST00000589604 TRAK1Q9UPV9 953 aa14.74□□□□□ -0.05
VPS4B-204ENST00000589604 ARHGEF28Q8N1W1 1705 aaKnown RBP14.74□□□□□ -0.05
VPS4B-204ENST00000589604 NALCNQ8IZF0 1738 aa14.73□□□□□ -0.05
VPS4B-204ENST00000589604 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.73□□□□□ -0.05
VPS4B-204ENST00000589604 ROCK2O75116 1388 aaKnown RBP14.72□□□□□ -0.05
VPS4B-204ENST00000589604 DLC1Q96QB1 1528 aa14.72□□□□□ -0.05
VPS4B-204ENST00000589604 USP47Q96K76 1375 aa14.72□□□□□ -0.05
VPS4B-204ENST00000589604 DIEXFQ68CQ4 756 aaKnown RBP14.71□□□□□ -0.05
VPS4B-204ENST00000589604 CARD11Q9BXL7 1154 aa14.71□□□□□ -0.05
VPS4B-204ENST00000589604 PRAM1Q96QH2 718 aa14.7□□□□□ -0.06
VPS4B-204ENST00000589604 FAM135BQ49AJ0 1406 aa14.7□□□□□ -0.06
VPS4B-204ENST00000589604 C11orf95C9JLR9 678 aaPredicted RBP14.69□□□□□ -0.06
VPS4B-204ENST00000589604 SAFB2Q14151 953 aaKnown RBP eCLIP14.69□□□□□ -0.06
VPS4B-204ENST00000589604 SIRT1Q96EB6 747 aa14.68□□□□□ -0.06
VPS4B-204ENST00000589604 ADGRL3Q9HAR2 1447 aa14.68□□□□□ -0.06
VPS4B-204ENST00000589604 IQSEC2Q5JU85 1478 aa14.67□□□□□ -0.06
VPS4B-204ENST00000589604 NCOA3Q9Y6Q9 1424 aa14.66□□□□□ -0.06
VPS4B-204ENST00000589604 WASHC2AQ641Q2 1341 aa14.66□□□□□ -0.06
VPS4B-204ENST00000589604 ST20-MTHFSA0A0A6YYL1 179 aa14.65□□□□□ -0.06
VPS4B-204ENST00000589604 QRICH2Q9H0J4 1663 aa14.64□□□□□ -0.07
VPS4B-204ENST00000589604 C14orf37Q86TY3 774 aa14.64□□□□□ -0.07
VPS4B-204ENST00000589604 C19orf44Q9H6X5 657 aa14.64□□□□□ -0.07
VPS4B-204ENST00000589604 POGKQ9P215 609 aa14.64□□□□□ -0.07
VPS4B-204ENST00000589604 MINK1Q8N4C8 1332 aaPredicted RBP14.63□□□□□ -0.07
VPS4B-204ENST00000589604 MSH6P52701 1360 aa14.63□□□□□ -0.07
VPS4B-204ENST00000589604 CCDC7Q96M83 1385 aa14.62□□□□□ -0.07
VPS4B-204ENST00000589604 ADGRB2O60241 1585 aa14.62□□□□□ -0.07
VPS4B-204ENST00000589604 CDC42BPGQ6DT37 1551 aa14.62□□□□□ -0.07
VPS4B-204ENST00000589604 CENPJQ9HC77 1338 aaPredicted RBP14.62□□□□□ -0.07
VPS4B-204ENST00000589604 DCCP43146 1447 aa14.61□□□□□ -0.07
VPS4B-204ENST00000589604 UBAP1LF5GYI3 381 aa14.61□□□□□ -0.07
VPS4B-204ENST00000589604 DDX10Q13206 875 aaKnown RBP14.61□□□□□ -0.07
VPS4B-204ENST00000589604 TESK2Q96S53 571 aa14.61□□□□□ -0.07
VPS4B-204ENST00000589604 FMN2Q9NZ56 1722 aa14.61□□□□□ -0.07
VPS4B-204ENST00000589604 KIF7Q2M1P5 1343 aa14.61□□□□□ -0.07
VPS4B-204ENST00000589604 MST1RQ04912 1400 aa14.6□□□□□ -0.07
VPS4B-204ENST00000589604 TULP4Q9NRJ4 1543 aa14.6□□□□□ -0.07
VPS4B-204ENST00000589604 FOXD4L1Q9NU39 408 aa14.59□□□□□ -0.07
VPS4B-204ENST00000589604 USP32Q8NFA0 1604 aa14.59□□□□□ -0.07
VPS4B-204ENST00000589604 NUTM2FA1L443 756 aa14.58□□□□□ -0.07
VPS4B-204ENST00000589604 RGPD8O14715 1765 aaPredicted RBP14.58□□□□□ -0.08
VPS4B-204ENST00000589604 ATF3P18847 181 aa14.58□□□□□ -0.08
VPS4B-204ENST00000589604 SLAIN2Q9P270 581 aa14.57□□□□□ -0.08
VPS4B-204ENST00000589604 EIF3AQ14152 1382 aaKnown RBP14.57□□□□□ -0.08
VPS4B-204ENST00000589604 WASLO00401 505 aaPredicted RBP14.56□□□□□ -0.08
VPS4B-204ENST00000589604 PIP4K2BP78356 416 aa14.56□□□□□ -0.08
VPS4B-204ENST00000589604 CADPS2Q86UW7 1296 aa14.56□□□□□ -0.08
VPS4B-204ENST00000589604 PRR36Q9H6K5 1346 aa14.56□□□□□ -0.08
VPS4B-204ENST00000589604 C1orf167Q5SNV9 1468 aa14.56□□□□□ -0.08
VPS4B-204ENST00000589604 ROBO1Q9Y6N7 1651 aa14.55□□□□□ -0.08
VPS4B-204ENST00000589604 TOM1O60784 492 aa14.55□□□□□ -0.08
VPS4B-204ENST00000589604 MIER1Q8N108 512 aa14.55□□□□□ -0.08
VPS4B-204ENST00000589604 ORAI2Q96SN7 254 aa14.55□□□□□ -0.08
VPS4B-204ENST00000589604 CDK19Q9BWU1 502 aa14.55□□□□□ -0.08
VPS4B-204ENST00000589604 DISP3Q9P2K9 1392 aa14.54□□□□□ -0.08
VPS4B-204ENST00000589604 SBNO2Q9Y2G9 1366 aa14.54□□□□□ -0.08
VPS4B-204ENST00000589604 ATP7BP35670 1465 aa14.53□□□□□ -0.08
VPS4B-204ENST00000589604 BRINP3Q76B58 766 aa14.53□□□□□ -0.08
VPS4B-204ENST00000589604 CABP2Q9NPB3 220 aa14.52□□□□□ -0.08
VPS4B-204ENST00000589604 SCAF1Q9H7N4 1312 aaKnown RBP14.52□□□□□ -0.09
VPS4B-204ENST00000589604 TOPAZ1Q8N9V7 1692 aa14.51□□□□□ -0.09
VPS4B-204ENST00000589604 DDX17Q92841 729 aaKnown RBP14.51□□□□□ -0.09
VPS4B-204ENST00000589604 NUDT16Q96DE0 195 aaKnown RBP14.5□□□□□ -0.09
VPS4B-204ENST00000589604 ANKARQ7Z5J8 1434 aa14.5□□□□□ -0.09
VPS4B-204ENST00000589604 EVC2Q86UK5 1308 aa14.49□□□□□ -0.09
VPS4B-204ENST00000589604 ESCO1Q5FWF5 840 aa14.49□□□□□ -0.09
VPS4B-204ENST00000589604 SRPK2P78362 688 aaKnown RBP14.48□□□□□ -0.09
VPS4B-204ENST00000589604 TMF1P82094 1093 aa14.48□□□□□ -0.09
VPS4B-204ENST00000589604 NHSL1Q5SYE7 1610 aa14.48□□□□□ -0.09
VPS4B-204ENST00000589604 PMFBP1Q8TBY8 1022 aa14.46□□□□□ -0.09
VPS4B-204ENST00000589604 MYOM1P52179 1685 aa14.46□□□□□ -0.09
VPS4B-204ENST00000589604 AHDC1Q5TGY3 1603 aaPredicted RBP14.46□□□□□ -0.09
VPS4B-204ENST00000589604 HSPA1LP34931 641 aa14.46□□□□□ -0.1
VPS4B-204ENST00000589604 ITSN1Q15811 1721 aa14.45□□□□□ -0.1
VPS4B-204ENST00000589604 PHF8Q9UPP1 1060 aa14.45□□□□□ -0.1
VPS4B-204ENST00000589604 PPIP5K1Q6PFW1 1433 aa14.45□□□□□ -0.1
VPS4B-204ENST00000589604 KIF1AQ12756 1690 aa14.44□□□□□ -0.1
VPS4B-204ENST00000589604 PHLPP1O60346 1717 aa14.44□□□□□ -0.1
VPS4B-204ENST00000589604 COL16A1Q07092 1604 aaPredicted RBP14.44□□□□□ -0.1
VPS4B-204ENST00000589604 FOXO3O43524 673 aa14.44□□□□□ -0.1
VPS4B-204ENST00000589604 XPCQ01831 940 aaPredicted RBP14.44□□□□□ -0.1
VPS4B-204ENST00000589604 POLR3GLQ9BT43 218 aa14.44□□□□□ -0.1
VPS4B-204ENST00000589604 PXDNQ92626 1479 aa14.44□□□□□ -0.1
VPS4B-204ENST00000589604 CABP1Q9NZU7 370 aa14.43□□□□□ -0.1
VPS4B-204ENST00000589604 CCDC61Q9Y6R9 512 aa14.43□□□□□ -0.1
VPS4B-204ENST00000589604 FKBP8Q14318 412 aa14.42□□□□□ -0.1
VPS4B-204ENST00000589604 CD163L1Q9NR16 1453 aa14.42□□□□□ -0.1
VPS4B-204ENST00000589604 PLEKHG3A1L390 1219 aa14.42□□□□□ -0.1
VPS4B-204ENST00000589604 POLR3AO14802 1390 aaPredicted RBP14.41□□□□□ -0.1
VPS4B-204ENST00000589604 ACEP12821 1306 aa14.41□□□□□ -0.1
VPS4B-204ENST00000589604 ATAD2Q6PL18 1390 aa14.41□□□□□ -0.1
VPS4B-204ENST00000589604 TRPM3Q9HCF6 1732 aaPredicted RBP14.4□□□□□ -0.1
VPS4B-204ENST00000589604 SLC12A5Q9H2X9 1139 aa14.4□□□□□ -0.1
VPS4B-204ENST00000589604 SOS2Q07890 1332 aaPredicted RBP14.4□□□□□ -0.1
VPS4B-204ENST00000589604 PER1O15534 1290 aaPredicted RBP14.39□□□□□ -0.11
VPS4B-204ENST00000589604 PUS7Q96PZ0 661 aaKnown RBP14.39□□□□□ -0.11
VPS4B-204ENST00000589604 AKAP12Q02952 1782 aa14.39□□□□□ -0.11
VPS4B-204ENST00000589604 CDCA8Q53HL2 280 aa14.39□□□□□ -0.11
VPS4B-204ENST00000589604 CPSF1Q10570 1443 aaKnown RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms