RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 TBX22Q9Y458 520 aa13.56□□□□□ -0.24
VPS25-202ENST00000589219 ZBED9Q6R2W3 1325 aa13.56□□□□□ -0.24
VPS25-202ENST00000589219 TMF1P82094 1093 aa13.55□□□□□ -0.24
VPS25-202ENST00000589219 TESK2Q96S53 571 aa13.55□□□□□ -0.24
VPS25-202ENST00000589219 BRD4O60885 1362 aaPredicted RBP13.55□□□□□ -0.24
VPS25-202ENST00000589219 MSH6P52701 1360 aa13.55□□□□□ -0.24
VPS25-202ENST00000589219 DIP2AQ14689 1571 aa13.54□□□□□ -0.24
VPS25-202ENST00000589219 SETBP1Q9Y6X0 1596 aa13.54□□□□□ -0.24
VPS25-202ENST00000589219 MYBBP1AQ9BQG0 1328 aaKnown RBP13.53□□□□□ -0.24
VPS25-202ENST00000589219 ROBO1Q9Y6N7 1651 aa13.53□□□□□ -0.24
VPS25-202ENST00000589219 CCDC184Q52MB2 194 aa13.52□□□□□ -0.25
VPS25-202ENST00000589219 CDCA8Q53HL2 280 aa13.52□□□□□ -0.25
VPS25-202ENST00000589219 RBM33Q96EV2 1170 aaKnown RBP13.52□□□□□ -0.25
VPS25-202ENST00000589219 PARD3Q8TEW0 1356 aa13.52□□□□□ -0.25
VPS25-202ENST00000589219 PIK3R4Q99570 1358 aa13.52□□□□□ -0.25
VPS25-202ENST00000589219 NCOA3Q9Y6Q9 1424 aa13.52□□□□□ -0.25
VPS25-202ENST00000589219 SLC24A1O60721 1099 aa13.51□□□□□ -0.25
VPS25-202ENST00000589219 NUTM2DQ5VT03 806 aaPredicted RBP13.5□□□□□ -0.25
VPS25-202ENST00000589219 SLAIN2Q9P270 581 aa13.5□□□□□ -0.25
VPS25-202ENST00000589219 PPLO60437 1756 aa13.5□□□□□ -0.25
VPS25-202ENST00000589219 C14orf37Q86TY3 774 aa13.49□□□□□ -0.25
VPS25-202ENST00000589219 FAM9BQ8IZU0 186 aa13.49□□□□□ -0.25
VPS25-202ENST00000589219 ADAMTS13Q76LX8 1427 aa13.48□□□□□ -0.25
VPS25-202ENST00000589219 INSRP06213 1382 aa13.48□□□□□ -0.25
VPS25-202ENST00000589219 LRPPRCP42704 1394 aaKnown RBP13.48□□□□□ -0.25
VPS25-202ENST00000589219 SBNO2Q9Y2G9 1366 aa13.48□□□□□ -0.25
VPS25-202ENST00000589219 RPGRIP1LQ68CZ1 1315 aa13.48□□□□□ -0.25
VPS25-202ENST00000589219 PIK3C2GO75747 1445 aa13.47□□□□□ -0.25
VPS25-202ENST00000589219 PHLPP1O60346 1717 aa13.47□□□□□ -0.25
VPS25-202ENST00000589219 FKBP8Q14318 412 aa13.46□□□□□ -0.25
VPS25-202ENST00000589219 CADPS2Q86UW7 1296 aa13.46□□□□□ -0.25
VPS25-202ENST00000589219 NLRP13Q86W25 1043 aa13.46□□□□□ -0.25
VPS25-202ENST00000589219 C19orf44Q9H6X5 657 aa13.46□□□□□ -0.25
VPS25-202ENST00000589219 MYOM1P52179 1685 aa13.46□□□□□ -0.26
VPS25-202ENST00000589219 ATF3P18847 181 aa13.45□□□□□ -0.26
VPS25-202ENST00000589219 TMC1Q8TDI8 760 aa13.45□□□□□ -0.26
VPS25-202ENST00000589219 AMOTL2Q9Y2J4 779 aa13.45□□□□□ -0.26
VPS25-202ENST00000589219 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.44□□□□□ -0.26
VPS25-202ENST00000589219 ERICH6BQ5W0A0 696 aa13.44□□□□□ -0.26
VPS25-202ENST00000589219 SMG6Q86US8 1419 aaKnown RBP13.44□□□□□ -0.26
VPS25-202ENST00000589219 ADGRB1O14514 1584 aa13.43□□□□□ -0.26
VPS25-202ENST00000589219 PER1O15534 1290 aaPredicted RBP13.43□□□□□ -0.26
VPS25-202ENST00000589219 HOXD11P31277 338 aaPredicted RBP13.43□□□□□ -0.26
VPS25-202ENST00000589219 PNISRQ8TF01 805 aaKnown RBP13.43□□□□□ -0.26
VPS25-202ENST00000589219 NEXMIFQ5QGS0 1516 aa13.43□□□□□ -0.26
VPS25-202ENST00000589219 NPC1L1Q9UHC9 1359 aa13.43□□□□□ -0.26
VPS25-202ENST00000589219 ADGRF5Q8IZF2 1346 aa13.42□□□□□ -0.26
VPS25-202ENST00000589219 ASXL1Q8IXJ9 1541 aa13.42□□□□□ -0.26
VPS25-202ENST00000589219 JCADQ9P266 1359 aa13.42□□□□□ -0.26
VPS25-202ENST00000589219 NRXN3Q9Y4C0 1643 aa13.42□□□□□ -0.26
VPS25-202ENST00000589219 DCCP43146 1447 aa13.4□□□□□ -0.26
VPS25-202ENST00000589219 PTPRUQ92729 1446 aa13.4□□□□□ -0.26
VPS25-202ENST00000589219 XRN1Q8IZH2 1706 aaKnown RBP13.4□□□□□ -0.26
VPS25-202ENST00000589219 PANK3Q9H999 370 aa13.4□□□□□ -0.26
VPS25-202ENST00000589219 VGFO15240 615 aaPredicted RBP13.39□□□□□ -0.27
VPS25-202ENST00000589219 CFAP70Q5T0N1 1121 aa13.39□□□□□ -0.27
VPS25-202ENST00000589219 CNKSR2Q8WXI2 1034 aa13.39□□□□□ -0.27
VPS25-202ENST00000589219 RGS17Q9UGC6 210 aaPredicted RBP13.39□□□□□ -0.27
VPS25-202ENST00000589219 COL16A1Q07092 1604 aaPredicted RBP13.39□□□□□ -0.27
VPS25-202ENST00000589219 BLMP54132 1417 aaPredicted RBP13.39□□□□□ -0.27
VPS25-202ENST00000589219 QRICH2Q9H0J4 1663 aa13.38□□□□□ -0.27
VPS25-202ENST00000589219 AHDC1Q5TGY3 1603 aaPredicted RBP13.38□□□□□ -0.27
VPS25-202ENST00000589219 METP08581 1390 aa13.37□□□□□ -0.27
VPS25-202ENST00000589219 C14orf93Q9H972 538 aaKnown RBP13.37□□□□□ -0.27
VPS25-202ENST00000589219 NUDCQ9Y266 331 aa13.37□□□□□ -0.27
VPS25-202ENST00000589219 SPATA31A6Q5VVP1 1343 aa13.37□□□□□ -0.27
VPS25-202ENST00000589219 CENPJQ9HC77 1338 aaPredicted RBP13.37□□□□□ -0.27
VPS25-202ENST00000589219 KNSTRNQ9Y448 316 aa13.36□□□□□ -0.27
VPS25-202ENST00000589219 SHPRHQ149N8 1683 aa13.35□□□□□ -0.27
VPS25-202ENST00000589219 CNGB1Q14028 1251 aaPredicted RBP13.35□□□□□ -0.27
VPS25-202ENST00000589219 USP32Q8NFA0 1604 aa13.35□□□□□ -0.27
VPS25-202ENST00000589219 ARHGEF28Q8N1W1 1705 aaKnown RBP13.34□□□□□ -0.27
VPS25-202ENST00000589219 BRINP3Q76B58 766 aa13.34□□□□□ -0.27
VPS25-202ENST00000589219 ADGRL3Q9HAR2 1447 aa13.33□□□□□ -0.28
VPS25-202ENST00000589219 CC2D1BQ5T0F9 858 aaKnown RBP13.33□□□□□ -0.28
VPS25-202ENST00000589219 MEX3CQ5U5Q3 659 aaKnown RBP13.33□□□□□ -0.28
VPS25-202ENST00000589219 POTEAQ6S8J7 498 aa13.33□□□□□ -0.28
VPS25-202ENST00000589219 AMER1Q5JTC6 1135 aaPredicted RBP13.32□□□□□ -0.28
VPS25-202ENST00000589219 MST1RQ04912 1400 aa13.31□□□□□ -0.28
VPS25-202ENST00000589219 SETD1AO15047 1707 aaKnown RBP13.31□□□□□ -0.28
VPS25-202ENST00000589219 NALCNQ8IZF0 1738 aa13.31□□□□□ -0.28
VPS25-202ENST00000589219 PDE3BQ13370 1112 aa13.31□□□□□ -0.28
VPS25-202ENST00000589219 PUS7Q96PZ0 661 aaKnown RBP13.31□□□□□ -0.28
VPS25-202ENST00000589219 NHSL1Q5SYE7 1610 aa13.31□□□□□ -0.28
VPS25-202ENST00000589219 PTCH1Q13635 1447 aa13.3□□□□□ -0.28
VPS25-202ENST00000589219 ZNF772Q68DY9 489 aaPredicted RBP13.3□□□□□ -0.28
VPS25-202ENST00000589219 LRRC59Q96AG4 307 aaKnown RBP13.29□□□□□ -0.28
VPS25-202ENST00000589219 RNF216Q9NWF9 866 aaPredicted RBP13.29□□□□□ -0.28
VPS25-202ENST00000589219 RNF123Q5XPI4 1314 aa13.29□□□□□ -0.28
VPS25-202ENST00000589219 PPP2R1AP30153 589 aa13.28□□□□□ -0.28
VPS25-202ENST00000589219 NINLQ9Y2I6 1382 aa13.28□□□□□ -0.28
VPS25-202ENST00000589219 TULP4Q9NRJ4 1543 aa13.28□□□□□ -0.28
VPS25-202ENST00000589219 LRP6O75581 1613 aa13.28□□□□□ -0.28
VPS25-202ENST00000589219 PPP4R2Q9NY27 417 aa13.27□□□□□ -0.29
VPS25-202ENST00000589219 NUTM2BA6NNL0 878 aaPredicted RBP13.26□□□□□ -0.29
VPS25-202ENST00000589219 NUTM2EB1AL46 878 aaPredicted RBP13.26□□□□□ -0.29
VPS25-202ENST00000589219 NUTM2AQ8IVF1 878 aaPredicted RBP13.26□□□□□ -0.29
VPS25-202ENST00000589219 ROBO2Q9HCK4 1378 aa13.26□□□□□ -0.29
VPS25-202ENST00000589219 C1orf167Q5SNV9 1468 aa13.25□□□□□ -0.29
VPS25-202ENST00000589219 NSD2O96028 1365 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms