RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 EVX2Q03828 476 aa14.03□□□□□ -0.16
SMCHD1-212ENST00000585229 POLR1AO95602 1720 aaPredicted RBP14.02□□□□□ -0.16
SMCHD1-212ENST00000585229 ALKQ9UM73 1620 aa14.02□□□□□ -0.16
SMCHD1-212ENST00000585229 ASXL1Q8IXJ9 1541 aa14.02□□□□□ -0.16
SMCHD1-212ENST00000585229 CD44P16070 742 aaKnown RBP14.02□□□□□ -0.17
SMCHD1-212ENST00000585229 THEMISQ8N1K5 641 aaPredicted RBP14.02□□□□□ -0.17
SMCHD1-212ENST00000585229 SCAF11Q99590 1463 aaKnown RBP14.01□□□□□ -0.17
SMCHD1-212ENST00000585229 ROCK2O75116 1388 aaKnown RBP14.01□□□□□ -0.17
SMCHD1-212ENST00000585229 PLEKHG1Q9ULL1 1385 aa14.01□□□□□ -0.17
SMCHD1-212ENST00000585229 HDGFP51858 240 aaKnown RBP14.01□□□□□ -0.17
SMCHD1-212ENST00000585229 C14orf93Q9H972 538 aaKnown RBP14.01□□□□□ -0.17
SMCHD1-212ENST00000585229 DIP2AQ14689 1571 aa14□□□□□ -0.17
SMCHD1-212ENST00000585229 MED14O60244 1454 aa13.99□□□□□ -0.17
SMCHD1-212ENST00000585229 HAX1O00165 279 aa13.99□□□□□ -0.17
SMCHD1-212ENST00000585229 NBPF1Q3BBV0 1214 aa13.98□□□□□ -0.17
SMCHD1-212ENST00000585229 TSPYL2Q9H2G4 693 aaPredicted RBP13.98□□□□□ -0.17
SMCHD1-212ENST00000585229 LMTK3Q96Q04 1460 aa13.98□□□□□ -0.17
SMCHD1-212ENST00000585229 KNDC1Q76NI1 1749 aa13.98□□□□□ -0.17
SMCHD1-212ENST00000585229 ADAMTS13Q76LX8 1427 aa13.98□□□□□ -0.17
SMCHD1-212ENST00000585229 USP47Q96K76 1375 aa13.97□□□□□ -0.17
SMCHD1-212ENST00000585229 LTKP29376 864 aa13.97□□□□□ -0.17
SMCHD1-212ENST00000585229 CFAP70Q5T0N1 1121 aa13.97□□□□□ -0.17
SMCHD1-212ENST00000585229 ARHGEF28Q8N1W1 1705 aaKnown RBP13.96□□□□□ -0.17
SMCHD1-212ENST00000585229 NUTM2DQ5VT03 806 aaPredicted RBP13.96□□□□□ -0.17
SMCHD1-212ENST00000585229 CARD11Q9BXL7 1154 aa13.96□□□□□ -0.17
SMCHD1-212ENST00000585229 EIF4G2P78344 907 aaKnown RBP eCLIP13.95□□□□□ -0.18
SMCHD1-212ENST00000585229 EID1Q9Y6B2 187 aa13.95□□□□□ -0.18
SMCHD1-212ENST00000585229 TXNDC2Q86VQ3 553 aa13.94□□□□□ -0.18
SMCHD1-212ENST00000585229 FAM212AQ96EL1 285 aa13.94□□□□□ -0.18
SMCHD1-212ENST00000585229 DLC1Q96QB1 1528 aa13.94□□□□□ -0.18
SMCHD1-212ENST00000585229 HSPA5P11021 654 aaKnown RBP13.93□□□□□ -0.18
SMCHD1-212ENST00000585229 DCAF8Q5TAQ9 597 aa13.93□□□□□ -0.18
SMCHD1-212ENST00000585229 ZRANB1Q9UGI0 708 aa13.93□□□□□ -0.18
SMCHD1-212ENST00000585229 CCDC61Q9Y6R9 512 aa13.93□□□□□ -0.18
SMCHD1-212ENST00000585229 CPS1P31327 1500 aa13.92□□□□□ -0.18
SMCHD1-212ENST00000585229 ZNF316A6NFI3 1004 aaPredicted RBP13.92□□□□□ -0.18
SMCHD1-212ENST00000585229 ANKLE2Q86XL3 938 aa13.92□□□□□ -0.18
SMCHD1-212ENST00000585229 TECPR2O15040 1411 aa13.91□□□□□ -0.18
SMCHD1-212ENST00000585229 YTHDC2Q9H6S0 1430 aaKnown RBP13.91□□□□□ -0.18
SMCHD1-212ENST00000585229 CIZ1Q9ULV3 898 aaPredicted RBP13.91□□□□□ -0.18
SMCHD1-212ENST00000585229 EIF3AQ14152 1382 aaKnown RBP13.91□□□□□ -0.18
SMCHD1-212ENST00000585229 NPHP4O75161 1426 aaPredicted RBP13.9□□□□□ -0.18
SMCHD1-212ENST00000585229 XRN1Q8IZH2 1706 aaKnown RBP13.9□□□□□ -0.18
SMCHD1-212ENST00000585229 TBX22Q9Y458 520 aa13.9□□□□□ -0.18
SMCHD1-212ENST00000585229 LRPPRCP42704 1394 aaKnown RBP13.9□□□□□ -0.18
SMCHD1-212ENST00000585229 SBNO2Q9Y2G9 1366 aa13.9□□□□□ -0.18
SMCHD1-212ENST00000585229 STRCQ7RTU9 1775 aa13.9□□□□□ -0.18
SMCHD1-212ENST00000585229 QRICH2Q9H0J4 1663 aa13.89□□□□□ -0.19
SMCHD1-212ENST00000585229 METP08581 1390 aa13.89□□□□□ -0.19
SMCHD1-212ENST00000585229 ABCC11Q96J66 1382 aa13.89□□□□□ -0.19
SMCHD1-212ENST00000585229 PIK3R4Q99570 1358 aa13.89□□□□□ -0.19
SMCHD1-212ENST00000585229 CHD2O14647 1828 aaKnown RBP13.89□□□□□ -0.19
SMCHD1-212ENST00000585229 GSE1Q14687 1217 aa13.88□□□□□ -0.19
SMCHD1-212ENST00000585229 PAK3O75914 559 aaPredicted RBP13.87□□□□□ -0.19
SMCHD1-212ENST00000585229 TMEM132EQ6IEE7 984 aa13.87□□□□□ -0.19
SMCHD1-212ENST00000585229 NWD1Q149M9 1564 aa13.87□□□□□ -0.19
SMCHD1-212ENST00000585229 ST20-MTHFSA0A0A6YYL1 179 aa13.86□□□□□ -0.19
SMCHD1-212ENST00000585229 ZNF579Q8NAF0 562 aaKnown RBP13.86□□□□□ -0.19
SMCHD1-212ENST00000585229 PHF12Q96QT6 1004 aa13.86□□□□□ -0.19
SMCHD1-212ENST00000585229 TESK2Q96S53 571 aa13.86□□□□□ -0.19
SMCHD1-212ENST00000585229 FAM135BQ49AJ0 1406 aa13.86□□□□□ -0.19
SMCHD1-212ENST00000585229 PTPRUQ92729 1446 aa13.86□□□□□ -0.19
SMCHD1-212ENST00000585229 PTCH1Q13635 1447 aa13.85□□□□□ -0.19
SMCHD1-212ENST00000585229 SIRT1Q96EB6 747 aa13.85□□□□□ -0.19
SMCHD1-212ENST00000585229 NCKAP5LQ9HCH0 1330 aa13.84□□□□□ -0.19
SMCHD1-212ENST00000585229 HIRIP3Q9BW71 556 aaPredicted RBP13.83□□□□□ -0.2
SMCHD1-212ENST00000585229 CENPJQ9HC77 1338 aaPredicted RBP13.83□□□□□ -0.2
SMCHD1-212ENST00000585229 SLC26A8Q96RN1 970 aa13.82□□□□□ -0.2
SMCHD1-212ENST00000585229 TRAK1Q9UPV9 953 aa13.82□□□□□ -0.2
SMCHD1-212ENST00000585229 ADGRB2O60241 1585 aa13.82□□□□□ -0.2
SMCHD1-212ENST00000585229 CCDC7Q96M83 1385 aa13.82□□□□□ -0.2
SMCHD1-212ENST00000585229 SLC24A1O60721 1099 aa13.81□□□□□ -0.2
SMCHD1-212ENST00000585229 PYGBP11216 843 aa13.81□□□□□ -0.2
SMCHD1-212ENST00000585229 HSPA2P54652 639 aa13.81□□□□□ -0.2
SMCHD1-212ENST00000585229 BCANQ96GW7 911 aa13.8□□□□□ -0.2
SMCHD1-212ENST00000585229 TULP4Q9NRJ4 1543 aa13.8□□□□□ -0.2
SMCHD1-212ENST00000585229 C11orf95C9JLR9 678 aaPredicted RBP13.79□□□□□ -0.2
SMCHD1-212ENST00000585229 WASHC2AQ641Q2 1341 aa13.79□□□□□ -0.2
SMCHD1-212ENST00000585229 ROBO2Q9HCK4 1378 aa13.79□□□□□ -0.2
SMCHD1-212ENST00000585229 DISP3Q9P2K9 1392 aa13.79□□□□□ -0.2
SMCHD1-212ENST00000585229 NKTRP30414 1462 aaKnown RBP13.79□□□□□ -0.2
SMCHD1-212ENST00000585229 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.78□□□□□ -0.2
SMCHD1-212ENST00000585229 STK26Q9P289 416 aa13.78□□□□□ -0.2
SMCHD1-212ENST00000585229 KIF7Q2M1P5 1343 aa13.78□□□□□ -0.2
SMCHD1-212ENST00000585229 MYOM1P52179 1685 aa13.78□□□□□ -0.2
SMCHD1-212ENST00000585229 STRCP1A6NGW2 1772 aa13.78□□□□□ -0.2
SMCHD1-212ENST00000585229 KIF12Q96FN5 646 aa13.77□□□□□ -0.21
SMCHD1-212ENST00000585229 PRAM1Q96QH2 718 aa13.77□□□□□ -0.21
SMCHD1-212ENST00000585229 PLEKHH1Q9ULM0 1364 aa13.77□□□□□ -0.21
SMCHD1-212ENST00000585229 AMOTL2Q9Y2J4 779 aa13.77□□□□□ -0.21
SMCHD1-212ENST00000585229 TMF1P82094 1093 aa13.76□□□□□ -0.21
SMCHD1-212ENST00000585229 PUS7Q96PZ0 661 aaKnown RBP13.76□□□□□ -0.21
SMCHD1-212ENST00000585229 CHRM1P11229 460 aaPredicted RBP13.75□□□□□ -0.21
SMCHD1-212ENST00000585229 KCNA6P17658 529 aa13.75□□□□□ -0.21
SMCHD1-212ENST00000585229 NALCNQ8IZF0 1738 aa13.74□□□□□ -0.21
SMCHD1-212ENST00000585229 MAP3K13O43283 966 aa13.74□□□□□ -0.21
SMCHD1-212ENST00000585229 CDCA8Q53HL2 280 aa13.74□□□□□ -0.21
SMCHD1-212ENST00000585229 ECM2O94769 699 aaPredicted RBP13.73□□□□□ -0.21
SMCHD1-212ENST00000585229 WAPLQ7Z5K2 1190 aa13.73□□□□□ -0.21
SMCHD1-212ENST00000585229 RNF25Q96BH1 459 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms