RNA–Protein interactions for RNA: ENST00000581536.5

TOP3A-211, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-211ENST00000581536 MSH6P52701 1360 aa14.34□□□□□ -0.11
TOP3A-211ENST00000581536 SPATA31E1Q6ZUB1 1445 aa14.34□□□□□ -0.11
TOP3A-211ENST00000581536 ROBO1Q9Y6N7 1651 aa14.34□□□□□ -0.11
TOP3A-211ENST00000581536 ILDR2Q71H61 639 aa14.34□□□□□ -0.11
TOP3A-211ENST00000581536 C19orf44Q9H6X5 657 aa14.34□□□□□ -0.11
TOP3A-211ENST00000581536 FAM135BQ49AJ0 1406 aa14.33□□□□□ -0.11
TOP3A-211ENST00000581536 XRN1Q8IZH2 1706 aaKnown RBP14.33□□□□□ -0.12
TOP3A-211ENST00000581536 IFT172Q9UG01 1749 aa14.32□□□□□ -0.12
TOP3A-211ENST00000581536 ACIN1Q9UKV3 1341 aaKnown RBP14.32□□□□□ -0.12
TOP3A-211ENST00000581536 HRCP23327 699 aa14.31□□□□□ -0.12
TOP3A-211ENST00000581536 FXR2P51116 673 aaKnown RBP eCLIP14.31□□□□□ -0.12
TOP3A-211ENST00000581536 NCOA3Q9Y6Q9 1424 aa14.31□□□□□ -0.12
TOP3A-211ENST00000581536 ATF3P18847 181 aa14.3□□□□□ -0.12
TOP3A-211ENST00000581536 TMEM132EQ6IEE7 984 aa14.3□□□□□ -0.12
TOP3A-211ENST00000581536 ANKRD30BQ9BXX2 1392 aa14.29□□□□□ -0.12
TOP3A-211ENST00000581536 CADPS2Q86UW7 1296 aa14.28□□□□□ -0.12
TOP3A-211ENST00000581536 STK26Q9P289 416 aa14.28□□□□□ -0.12
TOP3A-211ENST00000581536 ROBO2Q9HCK4 1378 aa14.27□□□□□ -0.12
TOP3A-211ENST00000581536 PHLPP1O60346 1717 aa14.27□□□□□ -0.13
TOP3A-211ENST00000581536 KDM2AQ9Y2K7 1162 aa14.26□□□□□ -0.13
TOP3A-211ENST00000581536 NALCNQ8IZF0 1738 aa14.26□□□□□ -0.13
TOP3A-211ENST00000581536 MED1Q15648 1581 aaPredicted RBP14.26□□□□□ -0.13
TOP3A-211ENST00000581536 CFAP70Q5T0N1 1121 aa14.25□□□□□ -0.13
TOP3A-211ENST00000581536 WAPLQ7Z5K2 1190 aa14.25□□□□□ -0.13
TOP3A-211ENST00000581536 PIP4P2Q8N4L2 257 aa14.25□□□□□ -0.13
TOP3A-211ENST00000581536 BRINP3Q76B58 766 aa14.24□□□□□ -0.13
TOP3A-211ENST00000581536 DDX17Q92841 729 aaKnown RBP14.24□□□□□ -0.13
TOP3A-211ENST00000581536 C14orf93Q9H972 538 aaKnown RBP14.23□□□□□ -0.13
TOP3A-211ENST00000581536 DCAF11Q8TEB1 546 aa14.22□□□□□ -0.13
TOP3A-211ENST00000581536 PIK3C2GO75747 1445 aa14.22□□□□□ -0.13
TOP3A-211ENST00000581536 VASPP50552 380 aaPredicted RBP14.21□□□□□ -0.13
TOP3A-211ENST00000581536 MIER1Q8N108 512 aa14.21□□□□□ -0.13
TOP3A-211ENST00000581536 MST1RQ04912 1400 aa14.21□□□□□ -0.13
TOP3A-211ENST00000581536 ADGRL3Q9HAR2 1447 aa14.21□□□□□ -0.13
TOP3A-211ENST00000581536 ASXL1Q8IXJ9 1541 aa14.2□□□□□ -0.14
TOP3A-211ENST00000581536 ORAI2Q96SN7 254 aa14.2□□□□□ -0.14
TOP3A-211ENST00000581536 RGS17Q9UGC6 210 aaPredicted RBP14.2□□□□□ -0.14
TOP3A-211ENST00000581536 PLEKHH1Q9ULM0 1364 aa14.2□□□□□ -0.14
TOP3A-211ENST00000581536 PLEKHG5O94827 1062 aa14.19□□□□□ -0.14
TOP3A-211ENST00000581536 COL16A1Q07092 1604 aaPredicted RBP14.19□□□□□ -0.14
TOP3A-211ENST00000581536 DCCP43146 1447 aa14.18□□□□□ -0.14
TOP3A-211ENST00000581536 PTCH1Q13635 1447 aa14.18□□□□□ -0.14
TOP3A-211ENST00000581536 NUTM2FA1L443 756 aa14.18□□□□□ -0.14
TOP3A-211ENST00000581536 PRKAR2AP13861 404 aaKnown RBP14.18□□□□□ -0.14
TOP3A-211ENST00000581536 PLCD3Q8N3E9 789 aa14.18□□□□□ -0.14
TOP3A-211ENST00000581536 CREBZFQ9NS37 354 aa14.18□□□□□ -0.14
TOP3A-211ENST00000581536 LRPPRCP42704 1394 aaKnown RBP14.18□□□□□ -0.14
TOP3A-211ENST00000581536 DHX57Q6P158 1386 aaKnown RBP14.18□□□□□ -0.14
TOP3A-211ENST00000581536 ABCC11Q96J66 1382 aa14.18□□□□□ -0.14
TOP3A-211ENST00000581536 NRXN1Q9ULB1 1477 aa14.18□□□□□ -0.14
TOP3A-211ENST00000581536 YTHDC2Q9H6S0 1430 aaKnown RBP14.17□□□□□ -0.14
TOP3A-211ENST00000581536 C1orf167Q5SNV9 1468 aa14.17□□□□□ -0.14
TOP3A-211ENST00000581536 RGPD8O14715 1765 aaPredicted RBP14.17□□□□□ -0.14
TOP3A-211ENST00000581536 SIN3AQ96ST3 1273 aa14.16□□□□□ -0.14
TOP3A-211ENST00000581536 PRAG1Q86YV5 1406 aa14.15□□□□□ -0.14
TOP3A-211ENST00000581536 MYOM2P54296 1465 aa14.15□□□□□ -0.14
TOP3A-211ENST00000581536 SAFB2Q14151 953 aaKnown RBP eCLIP14.15□□□□□ -0.14
TOP3A-211ENST00000581536 KNDC1Q76NI1 1749 aa14.15□□□□□ -0.14
TOP3A-211ENST00000581536 AHDC1Q5TGY3 1603 aaPredicted RBP14.15□□□□□ -0.14
TOP3A-211ENST00000581536 JCADQ9P266 1359 aa14.14□□□□□ -0.15
TOP3A-211ENST00000581536 TRAK1Q9UPV9 953 aa14.14□□□□□ -0.15
TOP3A-211ENST00000581536 NHSL1Q5SYE7 1610 aa14.14□□□□□ -0.15
TOP3A-211ENST00000581536 TECPR2O15040 1411 aa14.14□□□□□ -0.15
TOP3A-211ENST00000581536 CHADLQ6NUI6 762 aa14.13□□□□□ -0.15
TOP3A-211ENST00000581536 SIRT1Q96EB6 747 aa14.13□□□□□ -0.15
TOP3A-211ENST00000581536 NUTM2BA6NNL0 878 aaPredicted RBP14.12□□□□□ -0.15
TOP3A-211ENST00000581536 NUTM2EB1AL46 878 aaPredicted RBP14.12□□□□□ -0.15
TOP3A-211ENST00000581536 ESCO1Q5FWF5 840 aa14.12□□□□□ -0.15
TOP3A-211ENST00000581536 POTEAQ6S8J7 498 aa14.12□□□□□ -0.15
TOP3A-211ENST00000581536 NUTM2AQ8IVF1 878 aaPredicted RBP14.12□□□□□ -0.15
TOP3A-211ENST00000581536 PRAM1Q96QH2 718 aa14.12□□□□□ -0.15
TOP3A-211ENST00000581536 SOCS7O14512 581 aa14.11□□□□□ -0.15
TOP3A-211ENST00000581536 LAMC1P11047 1609 aa14.11□□□□□ -0.15
TOP3A-211ENST00000581536 NEUROD1Q13562 356 aa14.1□□□□□ -0.15
TOP3A-211ENST00000581536 LRRC59Q96AG4 307 aaKnown RBP14.1□□□□□ -0.15
TOP3A-211ENST00000581536 POGKQ9P215 609 aa14.1□□□□□ -0.15
TOP3A-211ENST00000581536 SHPRHQ149N8 1683 aa14.1□□□□□ -0.15
TOP3A-211ENST00000581536 ADGRB1O14514 1584 aa14.09□□□□□ -0.15
TOP3A-211ENST00000581536 LRP6O75581 1613 aa14.09□□□□□ -0.15
TOP3A-211ENST00000581536 XPCQ01831 940 aaPredicted RBP14.09□□□□□ -0.15
TOP3A-211ENST00000581536 NBPF1Q3BBV0 1214 aa14.09□□□□□ -0.15
TOP3A-211ENST00000581536 ZBTB47Q9UFB7 747 aaPredicted RBP14.09□□□□□ -0.15
TOP3A-211ENST00000581536 FMN2Q9NZ56 1722 aa14.08□□□□□ -0.16
TOP3A-211ENST00000581536 FOXO3O43524 673 aa14.08□□□□□ -0.16
TOP3A-211ENST00000581536 TRIM26Q12899 539 aaPredicted RBP14.08□□□□□ -0.16
TOP3A-211ENST00000581536 STAC3Q96MF2 364 aa14.08□□□□□ -0.16
TOP3A-211ENST00000581536 HIRIP3Q9BW71 556 aaPredicted RBP14.08□□□□□ -0.16
TOP3A-211ENST00000581536 L3MBTL2Q969R5 705 aa14.07□□□□□ -0.16
TOP3A-211ENST00000581536 CDC42BPGQ6DT37 1551 aa14.07□□□□□ -0.16
TOP3A-211ENST00000581536 SOS2Q07890 1332 aaPredicted RBP14.07□□□□□ -0.16
TOP3A-211ENST00000581536 SPATA31A6Q5VVP1 1343 aa14.07□□□□□ -0.16
TOP3A-211ENST00000581536 MEX3CQ5U5Q3 659 aaKnown RBP14.06□□□□□ -0.16
TOP3A-211ENST00000581536 POTEHQ6S545 545 aa14.06□□□□□ -0.16
TOP3A-211ENST00000581536 MINK1Q8N4C8 1332 aaPredicted RBP14.06□□□□□ -0.16
TOP3A-211ENST00000581536 FARP1Q9Y4F1 1045 aaPredicted RBP14.05□□□□□ -0.16
TOP3A-211ENST00000581536 MNX1P50219 401 aaPredicted RBP14.04□□□□□ -0.16
TOP3A-211ENST00000581536 PNPLA6Q8IY17 1366 aa14.04□□□□□ -0.16
TOP3A-211ENST00000581536 DLC1Q96QB1 1528 aa14.04□□□□□ -0.16
TOP3A-211ENST00000581536 ARHGEF28Q8N1W1 1705 aaKnown RBP14.02□□□□□ -0.16
TOP3A-211ENST00000581536 ADAMTS2O95450 1211 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms