RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 WAPLQ7Z5K2 1190 aa22.01■■□□□ 1.11
SS18-216ENST00000580751 C19orf44Q9H6X5 657 aa22.01■■□□□ 1.11
SS18-216ENST00000580751 SIPA1L2Q9P2F8 1722 aaPredicted RBP22■■□□□ 1.11
SS18-216ENST00000580751 CDC42BPGQ6DT37 1551 aa21.98■■□□□ 1.11
SS18-216ENST00000580751 TOM1O60784 492 aa21.97■■□□□ 1.11
SS18-216ENST00000580751 ATF3P18847 181 aa21.97■■□□□ 1.11
SS18-216ENST00000580751 CADPS2Q86UW7 1296 aa21.97■■□□□ 1.11
SS18-216ENST00000580751 UBAP1LF5GYI3 381 aa21.96■■□□□ 1.11
SS18-216ENST00000580751 ADGRB2O60241 1585 aa21.95■■□□□ 1.11
SS18-216ENST00000580751 SAFB2Q14151 953 aaKnown RBP eCLIP21.95■■□□□ 1.1
SS18-216ENST00000580751 CENPJQ9HC77 1338 aaPredicted RBP21.95■■□□□ 1.1
SS18-216ENST00000580751 QRICH2Q9H0J4 1663 aa21.92■■□□□ 1.1
SS18-216ENST00000580751 MINK1Q8N4C8 1332 aaPredicted RBP21.9■■□□□ 1.1
SS18-216ENST00000580751 USP47Q96K76 1375 aa21.89■■□□□ 1.1
SS18-216ENST00000580751 FBXO41Q8TF61 875 aa21.89■■□□□ 1.09
SS18-216ENST00000580751 MST1RQ04912 1400 aa21.89■■□□□ 1.09
SS18-216ENST00000580751 SLAIN2Q9P270 581 aa21.88■■□□□ 1.09
SS18-216ENST00000580751 FMN2Q9NZ56 1722 aa21.88■■□□□ 1.09
SS18-216ENST00000580751 SBNO2Q9Y2G9 1366 aa21.87■■□□□ 1.09
SS18-216ENST00000580751 HIRIP3Q9BW71 556 aaPredicted RBP21.87■■□□□ 1.09
SS18-216ENST00000580751 C1orf167Q5SNV9 1468 aa21.84■■□□□ 1.09
SS18-216ENST00000580751 SCAF1Q9H7N4 1312 aaKnown RBP21.84■■□□□ 1.09
SS18-216ENST00000580751 WASLO00401 505 aaPredicted RBP21.84■■□□□ 1.09
SS18-216ENST00000580751 PIP4K2BP78356 416 aa21.84■■□□□ 1.09
SS18-216ENST00000580751 ANKARQ7Z5J8 1434 aa21.83■■□□□ 1.09
SS18-216ENST00000580751 TULP4Q9NRJ4 1543 aa21.82■■□□□ 1.08
SS18-216ENST00000580751 ROBO1Q9Y6N7 1651 aa21.82■■□□□ 1.08
SS18-216ENST00000580751 ST20-MTHFSA0A0A6YYL1 179 aa21.81■■□□□ 1.08
SS18-216ENST00000580751 SLC24A1O60721 1099 aa21.8■■□□□ 1.08
SS18-216ENST00000580751 EVC2Q86UK5 1308 aa21.8■■□□□ 1.08
SS18-216ENST00000580751 EIF4G2P78344 907 aaKnown RBP eCLIP21.79■■□□□ 1.08
SS18-216ENST00000580751 CDK19Q9BWU1 502 aa21.78■■□□□ 1.08
SS18-216ENST00000580751 USP32Q8NFA0 1604 aa21.77■■□□□ 1.08
SS18-216ENST00000580751 NUTM2FA1L443 756 aa21.77■■□□□ 1.08
SS18-216ENST00000580751 BRINP3Q76B58 766 aa21.77■■□□□ 1.08
SS18-216ENST00000580751 ATP7BP35670 1465 aa21.77■■□□□ 1.07
SS18-216ENST00000580751 SRPK2P78362 688 aaKnown RBP21.76■■□□□ 1.07
SS18-216ENST00000580751 TESK2Q96S53 571 aa21.76■■□□□ 1.07
SS18-216ENST00000580751 KIF1AQ12756 1690 aa21.75■■□□□ 1.07
SS18-216ENST00000580751 ITSN1Q15811 1721 aa21.75■■□□□ 1.07
SS18-216ENST00000580751 ESCO1Q5FWF5 840 aa21.75■■□□□ 1.07
SS18-216ENST00000580751 PRR36Q9H6K5 1346 aa21.74■■□□□ 1.07
SS18-216ENST00000580751 NUDT16Q96DE0 195 aaKnown RBP21.73■■□□□ 1.07
SS18-216ENST00000580751 ORAI2Q96SN7 254 aa21.73■■□□□ 1.07
SS18-216ENST00000580751 RGPD8O14715 1765 aaPredicted RBP21.73■■□□□ 1.07
SS18-216ENST00000580751 AHDC1Q5TGY3 1603 aaPredicted RBP21.73■■□□□ 1.07
SS18-216ENST00000580751 HSPA5P11021 654 aaKnown RBP21.72■■□□□ 1.07
SS18-216ENST00000580751 TOPAZ1Q8N9V7 1692 aa21.72■■□□□ 1.07
SS18-216ENST00000580751 NHSL1Q5SYE7 1610 aa21.71■■□□□ 1.07
SS18-216ENST00000580751 TMF1P82094 1093 aa21.71■■□□□ 1.07
SS18-216ENST00000580751 CABP2Q9NPB3 220 aa21.71■■□□□ 1.07
SS18-216ENST00000580751 ATAD2Q6PL18 1390 aa21.71■■□□□ 1.07
SS18-216ENST00000580751 PHF8Q9UPP1 1060 aa21.7■■□□□ 1.06
SS18-216ENST00000580751 CCDC61Q9Y6R9 512 aa21.7■■□□□ 1.06
SS18-216ENST00000580751 PUS7Q96PZ0 661 aaKnown RBP21.69■■□□□ 1.06
SS18-216ENST00000580751 CDCA8Q53HL2 280 aa21.68■■□□□ 1.06
SS18-216ENST00000580751 NPHP3Q7Z494 1330 aa21.68■■□□□ 1.06
SS18-216ENST00000580751 PHLPP1O60346 1717 aa21.67■■□□□ 1.06
SS18-216ENST00000580751 DISP3Q9P2K9 1392 aa21.67■■□□□ 1.06
SS18-216ENST00000580751 ILDR1Q86SU0 546 aaPredicted RBP21.67■■□□□ 1.06
SS18-216ENST00000580751 PPIP5K1Q6PFW1 1433 aa21.66■■□□□ 1.06
SS18-216ENST00000580751 HSPA1LP34931 641 aa21.65■■□□□ 1.06
SS18-216ENST00000580751 FOXO3O43524 673 aa21.64■■□□□ 1.05
SS18-216ENST00000580751 PMFBP1Q8TBY8 1022 aa21.64■■□□□ 1.05
SS18-216ENST00000580751 COL16A1Q07092 1604 aaPredicted RBP21.64■■□□□ 1.05
SS18-216ENST00000580751 PLEKHG3A1L390 1219 aa21.63■■□□□ 1.05
SS18-216ENST00000580751 NGDNQ8NEJ9 315 aaKnown RBP21.62■■□□□ 1.05
SS18-216ENST00000580751 PXDNQ92626 1479 aa21.62■■□□□ 1.05
SS18-216ENST00000580751 POLR3AO14802 1390 aaPredicted RBP21.61■■□□□ 1.05
SS18-216ENST00000580751 NINLQ9Y2I6 1382 aa21.61■■□□□ 1.05
SS18-216ENST00000580751 SOS2Q07890 1332 aaPredicted RBP21.61■■□□□ 1.05
SS18-216ENST00000580751 DDX17Q92841 729 aaKnown RBP21.61■■□□□ 1.05
SS18-216ENST00000580751 CABP1Q9NZU7 370 aa21.6■■□□□ 1.05
SS18-216ENST00000580751 ZNF316A6NFI3 1004 aaPredicted RBP21.59■■□□□ 1.05
SS18-216ENST00000580751 PSME1Q06323 249 aa21.59■■□□□ 1.05
SS18-216ENST00000580751 ACEP12821 1306 aa21.58■■□□□ 1.05
SS18-216ENST00000580751 KRT28Q7Z3Y7 464 aa21.57■■□□□ 1.04
SS18-216ENST00000580751 TMC1Q8TDI8 760 aa21.57■■□□□ 1.04
SS18-216ENST00000580751 LRRC59Q96AG4 307 aaKnown RBP21.57■■□□□ 1.04
SS18-216ENST00000580751 XPCQ01831 940 aaPredicted RBP21.56■■□□□ 1.04
SS18-216ENST00000580751 SBNO1A3KN83 1393 aa21.55■■□□□ 1.04
SS18-216ENST00000580751 JCADQ9P266 1359 aa21.54■■□□□ 1.04
SS18-216ENST00000580751 AKAP12Q02952 1782 aa21.53■■□□□ 1.04
SS18-216ENST00000580751 BRD4O60885 1362 aaPredicted RBP21.53■■□□□ 1.04
SS18-216ENST00000580751 TRPM3Q9HCF6 1732 aaPredicted RBP21.53■■□□□ 1.04
SS18-216ENST00000580751 ZNF692Q9BU19 519 aaPredicted RBP21.53■■□□□ 1.04
SS18-216ENST00000580751 USP6P35125 1406 aa21.53■■□□□ 1.04
SS18-216ENST00000580751 CPSF1Q10570 1443 aaKnown RBP21.53■■□□□ 1.04
SS18-216ENST00000580751 TNS3Q68CZ2 1445 aa21.53■■□□□ 1.04
SS18-216ENST00000580751 SHPRHQ149N8 1683 aa21.53■■□□□ 1.04
SS18-216ENST00000580751 SLC12A5Q9H2X9 1139 aa21.52■■□□□ 1.04
SS18-216ENST00000580751 TERF2IPQ9NYB0 399 aa21.52■■□□□ 1.04
SS18-216ENST00000580751 MYOM1P52179 1685 aa21.51■■□□□ 1.03
SS18-216ENST00000580751 HDGFL2Q7Z4V5 671 aaPredicted RBP21.51■■□□□ 1.03
SS18-216ENST00000580751 SPATA31A3Q5VYP0 1347 aa21.51■■□□□ 1.03
SS18-216ENST00000580751 CD163L1Q9NR16 1453 aa21.51■■□□□ 1.03
SS18-216ENST00000580751 MON2Q7Z3U7 1717 aa21.5■■□□□ 1.03
SS18-216ENST00000580751 POLR3GLQ9BT43 218 aa21.5■■□□□ 1.03
SS18-216ENST00000580751 ARHGEF10O15013 1369 aa21.49■■□□□ 1.03
SS18-216ENST00000580751 KTN1Q86UP2 1357 aaKnown RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms