RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 PDCL3Q9H2J4 239 aa17.74■□□□□ 0.43
ITGB4-207ENST00000580542 NEXMIFQ5QGS0 1516 aa17.73■□□□□ 0.43
ITGB4-207ENST00000580542 BRD4O60885 1362 aaPredicted RBP17.73■□□□□ 0.43
ITGB4-207ENST00000580542 SLC52A1Q9NWF4 448 aa17.73■□□□□ 0.43
ITGB4-207ENST00000580542 PRDM4Q9UKN5 801 aa17.72■□□□□ 0.43
ITGB4-207ENST00000580542 RPGRIP1LQ68CZ1 1315 aa17.72■□□□□ 0.43
ITGB4-207ENST00000580542 MYBBP1AQ9BQG0 1328 aaKnown RBP17.72■□□□□ 0.43
ITGB4-207ENST00000580542 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
ITGB4-207ENST00000580542 MYO5BQ9ULV0 1848 aa17.72■□□□□ 0.43
ITGB4-207ENST00000580542 KTN1Q86UP2 1357 aaKnown RBP17.7■□□□□ 0.42
ITGB4-207ENST00000580542 SETBP1Q9Y6X0 1596 aa17.7■□□□□ 0.42
ITGB4-207ENST00000580542 KDM5AP29375 1690 aaKnown RBP17.7■□□□□ 0.42
ITGB4-207ENST00000580542 ZFYVE9O95405 1425 aa17.7■□□□□ 0.42
ITGB4-207ENST00000580542 RALBP1Q15311 655 aa17.69■□□□□ 0.42
ITGB4-207ENST00000580542 PIK3C2GO75747 1445 aa17.69■□□□□ 0.42
ITGB4-207ENST00000580542 CENPJQ9HC77 1338 aaPredicted RBP17.67■□□□□ 0.42
ITGB4-207ENST00000580542 NBPF1Q3BBV0 1214 aa17.67■□□□□ 0.42
ITGB4-207ENST00000580542 IDI1Q13907 227 aa17.66■□□□□ 0.42
ITGB4-207ENST00000580542 ZMYM3Q14202 1370 aa17.66■□□□□ 0.42
ITGB4-207ENST00000580542 XRCC6P12956 609 aaKnown RBP eCLIP17.66■□□□□ 0.42
ITGB4-207ENST00000580542 GOLGA6L3A6NEY3 463 aa17.65■□□□□ 0.42
ITGB4-207ENST00000580542 FER1L4A9Z1Z3 1794 aa17.64■□□□□ 0.42
ITGB4-207ENST00000580542 PARD3Q8TEW0 1356 aa17.64■□□□□ 0.41
ITGB4-207ENST00000580542 ADGRF5Q8IZF2 1346 aa17.64■□□□□ 0.41
ITGB4-207ENST00000580542 MYO3AQ8NEV4 1616 aa17.64■□□□□ 0.41
ITGB4-207ENST00000580542 TPM2P07951 284 aa17.63■□□□□ 0.41
ITGB4-207ENST00000580542 FBXO31Q5XUX0 539 aaPredicted RBP17.63■□□□□ 0.41
ITGB4-207ENST00000580542 BCL11BQ9C0K0 894 aaPredicted RBP17.63■□□□□ 0.41
ITGB4-207ENST00000580542 RCAN3Q9UKA8 241 aa17.63■□□□□ 0.41
ITGB4-207ENST00000580542 ADGRB1O14514 1584 aa17.63■□□□□ 0.41
ITGB4-207ENST00000580542 SCAF11Q99590 1463 aaKnown RBP17.63■□□□□ 0.41
ITGB4-207ENST00000580542 PDIA4P13667 645 aaKnown RBP17.62■□□□□ 0.41
ITGB4-207ENST00000580542 PANK2Q9BZ23 570 aa17.62■□□□□ 0.41
ITGB4-207ENST00000580542 C3P01024 1663 aa17.62■□□□□ 0.41
ITGB4-207ENST00000580542 A2ML1A8K2U0 1454 aa17.61■□□□□ 0.41
ITGB4-207ENST00000580542 NLRP13Q86W25 1043 aa17.61■□□□□ 0.41
ITGB4-207ENST00000580542 FAM161AQ3B820 660 aa17.59■□□□□ 0.41
ITGB4-207ENST00000580542 MLECQ14165 292 aa17.59■□□□□ 0.41
ITGB4-207ENST00000580542 TESK2Q96S53 571 aa17.58■□□□□ 0.41
ITGB4-207ENST00000580542 PER1O15534 1290 aaPredicted RBP17.58■□□□□ 0.4
ITGB4-207ENST00000580542 ESPNB1AK53 854 aa17.57■□□□□ 0.4
ITGB4-207ENST00000580542 UBR1Q8IWV7 1749 aa17.57■□□□□ 0.4
ITGB4-207ENST00000580542 C14orf93Q9H972 538 aaKnown RBP17.57■□□□□ 0.4
ITGB4-207ENST00000580542 ADAMTSL3P82987 1691 aa17.56■□□□□ 0.4
ITGB4-207ENST00000580542 VGFO15240 615 aaPredicted RBP17.55■□□□□ 0.4
ITGB4-207ENST00000580542 PDE3BQ13370 1112 aa17.55■□□□□ 0.4
ITGB4-207ENST00000580542 GZF1Q9H116 711 aaPredicted RBP17.55■□□□□ 0.4
ITGB4-207ENST00000580542 SLKQ9H2G2 1235 aaPredicted RBP17.55■□□□□ 0.4
ITGB4-207ENST00000580542 SETD1AO15047 1707 aaKnown RBP17.55■□□□□ 0.4
ITGB4-207ENST00000580542 NLRP1Q9C000 1473 aa17.55■□□□□ 0.4
ITGB4-207ENST00000580542 TNRQ92752 1358 aa17.54■□□□□ 0.4
ITGB4-207ENST00000580542 DISP3Q9P2K9 1392 aa17.54■□□□□ 0.4
ITGB4-207ENST00000580542 CHGAP10645 457 aaKnown RBP17.54■□□□□ 0.4
ITGB4-207ENST00000580542 C8orf34Q49A92 452 aa17.54■□□□□ 0.4
ITGB4-207ENST00000580542 CFAP70Q5T0N1 1121 aa17.54■□□□□ 0.4
ITGB4-207ENST00000580542 ESF1Q9H501 851 aaKnown RBP17.53■□□□□ 0.4
ITGB4-207ENST00000580542 ASXL1Q8IXJ9 1541 aa17.53■□□□□ 0.4
ITGB4-207ENST00000580542 SBNO2Q9Y2G9 1366 aa17.53■□□□□ 0.4
ITGB4-207ENST00000580542 CDCA7LQ96GN5 454 aa17.52■□□□□ 0.4
ITGB4-207ENST00000580542 EIF3AQ14152 1382 aaKnown RBP17.52■□□□□ 0.4
ITGB4-207ENST00000580542 PLIN1O60240 522 aa17.52■□□□□ 0.4
ITGB4-207ENST00000580542 MYH16Q9H6N6 1097 aa17.52■□□□□ 0.4
ITGB4-207ENST00000580542 BLMP54132 1417 aaPredicted RBP17.52■□□□□ 0.39
ITGB4-207ENST00000580542 ARHGEF28Q8N1W1 1705 aaKnown RBP17.51■□□□□ 0.39
ITGB4-207ENST00000580542 FSD2A1L4K1 749 aa17.51■□□□□ 0.39
ITGB4-207ENST00000580542 TRIM44Q96DX7 344 aaPredicted RBP17.51■□□□□ 0.39
ITGB4-207ENST00000580542 NRXN3Q9Y4C0 1643 aa17.51■□□□□ 0.39
ITGB4-207ENST00000580542 BBXQ8WY36 941 aaPredicted RBP17.51■□□□□ 0.39
ITGB4-207ENST00000580542 CRBNQ96SW2 442 aa17.51■□□□□ 0.39
ITGB4-207ENST00000580542 KIAA1211Q6ZU35 1233 aa17.5■□□□□ 0.39
ITGB4-207ENST00000580542 CC2D1BQ5T0F9 858 aaKnown RBP17.5■□□□□ 0.39
ITGB4-207ENST00000580542 ERBB4Q15303 1308 aa17.49■□□□□ 0.39
ITGB4-207ENST00000580542 INSRP06213 1382 aa17.49■□□□□ 0.39
ITGB4-207ENST00000580542 ALKQ9UM73 1620 aa17.49■□□□□ 0.39
ITGB4-207ENST00000580542 RIMS2Q9UQ26 1411 aa17.49■□□□□ 0.39
ITGB4-207ENST00000580542 BECN1Q14457 450 aa17.48■□□□□ 0.39
ITGB4-207ENST00000580542 MRE11P49959 708 aa17.47■□□□□ 0.39
ITGB4-207ENST00000580542 PANK3Q9H999 370 aa17.47■□□□□ 0.39
ITGB4-207ENST00000580542 QRICH2Q9H0J4 1663 aa17.47■□□□□ 0.39
ITGB4-207ENST00000580542 ZHX1Q9UKY1 873 aaPredicted RBP17.46■□□□□ 0.39
ITGB4-207ENST00000580542 RIMS1Q86UR5 1692 aaKnown RBP17.46■□□□□ 0.39
ITGB4-207ENST00000580542 MYOM1P52179 1685 aa17.46■□□□□ 0.39
ITGB4-207ENST00000580542 SLIT1O75093 1534 aa17.46■□□□□ 0.38
ITGB4-207ENST00000580542 PTPRMP28827 1452 aa17.45■□□□□ 0.38
ITGB4-207ENST00000580542 ARHGAP23Q9P227 1491 aa17.45■□□□□ 0.38
ITGB4-207ENST00000580542 FAM13BQ9NYF5 915 aa17.44■□□□□ 0.38
ITGB4-207ENST00000580542 TMF1P82094 1093 aa17.44■□□□□ 0.38
ITGB4-207ENST00000580542 ZNF142P52746 1687 aaPredicted RBP17.43■□□□□ 0.38
ITGB4-207ENST00000580542 CENPQQ7L2Z9 268 aaPredicted RBP17.43■□□□□ 0.38
ITGB4-207ENST00000580542 TMEM2Q9UHN6 1383 aa17.43■□□□□ 0.38
ITGB4-207ENST00000580542 MAP7D2Q96T17 732 aa17.43■□□□□ 0.38
ITGB4-207ENST00000580542 SMAP1Q8IYB5 467 aaPredicted RBP17.42■□□□□ 0.38
ITGB4-207ENST00000580542 DLC1Q96QB1 1528 aa17.42■□□□□ 0.38
ITGB4-207ENST00000580542 KNDC1Q76NI1 1749 aa17.41■□□□□ 0.38
ITGB4-207ENST00000580542 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.41■□□□□ 0.38
ITGB4-207ENST00000580542 ARID3AQ99856 593 aa17.41■□□□□ 0.38
ITGB4-207ENST00000580542 GRPEL1Q9HAV7 217 aa17.41■□□□□ 0.38
ITGB4-207ENST00000580542 NAP1L2Q9ULW6 460 aaPredicted RBP17.41■□□□□ 0.38
ITGB4-207ENST00000580542 KDM2BQ8NHM5 1336 aa17.4■□□□□ 0.38
ITGB4-207ENST00000580542 STAG3Q9UJ98 1225 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms