RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 SLIT1O75093 1534 aa17.3■□□□□ 0.36
CDK5RAP3-217ENST00000580287 SRPK2P78362 688 aaKnown RBP17.29■□□□□ 0.36
CDK5RAP3-217ENST00000580287 KDM5AP29375 1690 aaKnown RBP17.28■□□□□ 0.36
CDK5RAP3-217ENST00000580287 ARHGEF28Q8N1W1 1705 aaKnown RBP17.28■□□□□ 0.36
CDK5RAP3-217ENST00000580287 ABCC11Q96J66 1382 aa17.28■□□□□ 0.36
CDK5RAP3-217ENST00000580287 SBNO2Q9Y2G9 1366 aa17.28■□□□□ 0.36
CDK5RAP3-217ENST00000580287 NCKAP5LQ9HCH0 1330 aa17.27■□□□□ 0.36
CDK5RAP3-217ENST00000580287 HSPA2P54652 639 aa17.27■□□□□ 0.36
CDK5RAP3-217ENST00000580287 AMOTL2Q9Y2J4 779 aa17.27■□□□□ 0.36
CDK5RAP3-217ENST00000580287 EVC2Q86UK5 1308 aa17.27■□□□□ 0.36
CDK5RAP3-217ENST00000580287 RBM33Q96EV2 1170 aaKnown RBP17.27■□□□□ 0.35
CDK5RAP3-217ENST00000580287 QRICH2Q9H0J4 1663 aa17.27■□□□□ 0.35
CDK5RAP3-217ENST00000580287 SETD1AO15047 1707 aaKnown RBP17.26■□□□□ 0.35
CDK5RAP3-217ENST00000580287 ROBO2Q9HCK4 1378 aa17.26■□□□□ 0.35
CDK5RAP3-217ENST00000580287 PTPRUQ92729 1446 aa17.26■□□□□ 0.35
CDK5RAP3-217ENST00000580287 CDK19Q9BWU1 502 aa17.26■□□□□ 0.35
CDK5RAP3-217ENST00000580287 CARD14Q9BXL6 1004 aa17.26■□□□□ 0.35
CDK5RAP3-217ENST00000580287 TBX22Q9Y458 520 aa17.25■□□□□ 0.35
CDK5RAP3-217ENST00000580287 NUTM2FA1L443 756 aa17.24■□□□□ 0.35
CDK5RAP3-217ENST00000580287 TULP4Q9NRJ4 1543 aa17.24■□□□□ 0.35
CDK5RAP3-217ENST00000580287 SETD1BQ9UPS6 1966 aaKnown RBP17.24■□□□□ 0.35
CDK5RAP3-217ENST00000580287 MED14O60244 1454 aa17.23■□□□□ 0.35
CDK5RAP3-217ENST00000580287 KNSTRNQ9Y448 316 aa17.23■□□□□ 0.35
CDK5RAP3-217ENST00000580287 HNRNPUQ00839 825 aaKnown RBP eCLIP17.22■□□□□ 0.35
CDK5RAP3-217ENST00000580287 KCNA6P17658 529 aa17.22■□□□□ 0.35
CDK5RAP3-217ENST00000580287 TSHZ2Q9NRE2 1034 aa17.21■□□□□ 0.35
CDK5RAP3-217ENST00000580287 MRS2Q9HD23 443 aa17.21■□□□□ 0.35
CDK5RAP3-217ENST00000580287 CABP1Q9NZU7 370 aa17.19■□□□□ 0.34
CDK5RAP3-217ENST00000580287 FAM9BQ8IZU0 186 aa17.18■□□□□ 0.34
CDK5RAP3-217ENST00000580287 WASLO00401 505 aaPredicted RBP17.17■□□□□ 0.34
CDK5RAP3-217ENST00000580287 IRX6P78412 446 aaPredicted RBP17.17■□□□□ 0.34
CDK5RAP3-217ENST00000580287 MYOM1P52179 1685 aa17.17■□□□□ 0.34
CDK5RAP3-217ENST00000580287 KTN1Q86UP2 1357 aaKnown RBP17.17■□□□□ 0.34
CDK5RAP3-217ENST00000580287 SENP3-EIF4A1A0A087X0R7 540 aa17.17■□□□□ 0.34
CDK5RAP3-217ENST00000580287 TECPR2O15040 1411 aa17.16■□□□□ 0.34
CDK5RAP3-217ENST00000580287 DLC1Q96QB1 1528 aa17.16■□□□□ 0.34
CDK5RAP3-217ENST00000580287 ZNF142P52746 1687 aaPredicted RBP17.16■□□□□ 0.34
CDK5RAP3-217ENST00000580287 SIRT1Q96EB6 747 aa17.15■□□□□ 0.34
CDK5RAP3-217ENST00000580287 FAM135BQ49AJ0 1406 aa17.14■□□□□ 0.33
CDK5RAP3-217ENST00000580287 TNNT2P45379 298 aaPredicted RBP17.14■□□□□ 0.33
CDK5RAP3-217ENST00000580287 RALBP1Q15311 655 aa17.14■□□□□ 0.33
CDK5RAP3-217ENST00000580287 NPHP4O75161 1426 aaPredicted RBP17.14■□□□□ 0.33
CDK5RAP3-217ENST00000580287 NSD3Q9BZ95 1437 aa17.13■□□□□ 0.33
CDK5RAP3-217ENST00000580287 NUDT16Q96DE0 195 aaKnown RBP17.13■□□□□ 0.33
CDK5RAP3-217ENST00000580287 PARD3Q8TEW0 1356 aa17.12■□□□□ 0.33
CDK5RAP3-217ENST00000580287 PRR36Q9H6K5 1346 aa17.12■□□□□ 0.33
CDK5RAP3-217ENST00000580287 PUS7Q96PZ0 661 aaKnown RBP17.12■□□□□ 0.33
CDK5RAP3-217ENST00000580287 ARXQ96QS3 562 aa17.12■□□□□ 0.33
CDK5RAP3-217ENST00000580287 ANP32EQ9BTT0 268 aa17.12■□□□□ 0.33
CDK5RAP3-217ENST00000580287 A0A1W2PP64 1363 aa17.11■□□□□ 0.33
CDK5RAP3-217ENST00000580287 NEFLP07196 543 aa17.11■□□□□ 0.33
CDK5RAP3-217ENST00000580287 MYBBP1AQ9BQG0 1328 aaKnown RBP17.11■□□□□ 0.33
CDK5RAP3-217ENST00000580287 CPS1P31327 1500 aa17.11■□□□□ 0.33
CDK5RAP3-217ENST00000580287 ATAD2Q6PL18 1390 aa17.1■□□□□ 0.33
CDK5RAP3-217ENST00000580287 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.09■□□□□ 0.33
CDK5RAP3-217ENST00000580287 ANKRD36BQ8N2N9 1353 aa17.09■□□□□ 0.33
CDK5RAP3-217ENST00000580287 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.08■□□□□ 0.33
CDK5RAP3-217ENST00000580287 TULP1O00294 542 aaPredicted RBP17.08■□□□□ 0.32
CDK5RAP3-217ENST00000580287 CCDC61Q9Y6R9 512 aa17.08■□□□□ 0.32
CDK5RAP3-217ENST00000580287 GGNBP2Q9H3C7 697 aa17.07■□□□□ 0.32
CDK5RAP3-217ENST00000580287 PPP2R1AP30153 589 aa17.07■□□□□ 0.32
CDK5RAP3-217ENST00000580287 TERF2IPQ9NYB0 399 aa17.07■□□□□ 0.32
CDK5RAP3-217ENST00000580287 CD163L1Q9NR16 1453 aa17.07■□□□□ 0.32
CDK5RAP3-217ENST00000580287 NLRP13Q86W25 1043 aa17.06■□□□□ 0.32
CDK5RAP3-217ENST00000580287 PMFBP1Q8TBY8 1022 aa17.06■□□□□ 0.32
CDK5RAP3-217ENST00000580287 KNDC1Q76NI1 1749 aa17.06■□□□□ 0.32
CDK5RAP3-217ENST00000580287 PPIP5K1Q6PFW1 1433 aa17.06■□□□□ 0.32
CDK5RAP3-217ENST00000580287 PTCH1Q13635 1447 aa17.05■□□□□ 0.32
CDK5RAP3-217ENST00000580287 DIP2AQ14689 1571 aa17.05■□□□□ 0.32
CDK5RAP3-217ENST00000580287 PIK3R4Q99570 1358 aa17.05■□□□□ 0.32
CDK5RAP3-217ENST00000580287 LMTK3Q96Q04 1460 aa17.05■□□□□ 0.32
CDK5RAP3-217ENST00000580287 HDGFL2Q7Z4V5 671 aaPredicted RBP17.05■□□□□ 0.32
CDK5RAP3-217ENST00000580287 PNISRQ8TF01 805 aaKnown RBP17.05■□□□□ 0.32
CDK5RAP3-217ENST00000580287 AEBP2Q6ZN18 517 aaPredicted RBP17.04■□□□□ 0.32
CDK5RAP3-217ENST00000580287 C14orf37Q86TY3 774 aa17.04■□□□□ 0.32
CDK5RAP3-217ENST00000580287 MORC1Q86VD1 984 aa17.04■□□□□ 0.32
CDK5RAP3-217ENST00000580287 FBLN1P23142 703 aa17.04■□□□□ 0.32
CDK5RAP3-217ENST00000580287 CGNL1Q0VF96 1302 aa17.04■□□□□ 0.32
CDK5RAP3-217ENST00000580287 FYB1O15117 783 aa17.03■□□□□ 0.32
CDK5RAP3-217ENST00000580287 PROSER2Q86WR7 435 aaPredicted RBP17.02■□□□□ 0.32
CDK5RAP3-217ENST00000580287 ZRANB1Q9UGI0 708 aa17.02■□□□□ 0.32
CDK5RAP3-217ENST00000580287 XRN1Q8IZH2 1706 aaKnown RBP17.02■□□□□ 0.31
CDK5RAP3-217ENST00000580287 ATP7BP35670 1465 aa17.01■□□□□ 0.31
CDK5RAP3-217ENST00000580287 BRD4O60885 1362 aaPredicted RBP17.01■□□□□ 0.31
CDK5RAP3-217ENST00000580287 ACEP12821 1306 aa17■□□□□ 0.31
CDK5RAP3-217ENST00000580287 NINLQ9Y2I6 1382 aa17■□□□□ 0.31
CDK5RAP3-217ENST00000580287 NPC1L1Q9UHC9 1359 aa17■□□□□ 0.31
CDK5RAP3-217ENST00000580287 NME9Q86XW9 330 aa16.99■□□□□ 0.31
CDK5RAP3-217ENST00000580287 KLHL34Q8N239 644 aa16.99■□□□□ 0.31
CDK5RAP3-217ENST00000580287 CHD2O14647 1828 aaKnown RBP16.98■□□□□ 0.31
CDK5RAP3-217ENST00000580287 CPSF1Q10570 1443 aaKnown RBP16.96■□□□□ 0.31
CDK5RAP3-217ENST00000580287 NGDNQ8NEJ9 315 aaKnown RBP16.96■□□□□ 0.3
CDK5RAP3-217ENST00000580287 SALL2Q9Y467 1007 aaPredicted RBP16.96■□□□□ 0.3
CDK5RAP3-217ENST00000580287 MTHFSP49914 203 aa16.95■□□□□ 0.3
CDK5RAP3-217ENST00000580287 NKTRP30414 1462 aaKnown RBP16.95■□□□□ 0.3
CDK5RAP3-217ENST00000580287 PLEKHG3A1L390 1219 aa16.95■□□□□ 0.3
CDK5RAP3-217ENST00000580287 ADAMTS8Q9UP79 889 aa16.94■□□□□ 0.3
CDK5RAP3-217ENST00000580287 ADGRB2O60241 1585 aa16.94■□□□□ 0.3
CDK5RAP3-217ENST00000580287 ZNF335Q9H4Z2 1342 aaPredicted RBP16.94■□□□□ 0.3
CDK5RAP3-217ENST00000580287 ZBED9Q6R2W3 1325 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms