RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 DCCP43146 1447 aa25.74■■□□□ 1.71
CCDC40-213ENST00000574933 CENPJQ9HC77 1338 aaPredicted RBP25.74■■□□□ 1.71
CCDC40-213ENST00000574933 CDC42BPGQ6DT37 1551 aa25.73■■□□□ 1.71
CCDC40-213ENST00000574933 USP47Q96K76 1375 aa25.73■■□□□ 1.71
CCDC40-213ENST00000574933 RBM33Q96EV2 1170 aaKnown RBP25.73■■□□□ 1.71
CCDC40-213ENST00000574933 C19orf44Q9H6X5 657 aa25.73■■□□□ 1.71
CCDC40-213ENST00000574933 SBNO2Q9Y2G9 1366 aa25.72■■□□□ 1.71
CCDC40-213ENST00000574933 MSH6P52701 1360 aa25.71■■□□□ 1.71
CCDC40-213ENST00000574933 FMN2Q9NZ56 1722 aa25.69■■□□□ 1.7
CCDC40-213ENST00000574933 SAFB2Q14151 953 aaKnown RBP eCLIP25.67■■□□□ 1.7
CCDC40-213ENST00000574933 C14orf37Q86TY3 774 aa25.66■■□□□ 1.7
CCDC40-213ENST00000574933 ST20-MTHFSA0A0A6YYL1 179 aa25.65■■□□□ 1.7
CCDC40-213ENST00000574933 EIF4G2P78344 907 aaKnown RBP eCLIP25.64■■□□□ 1.7
CCDC40-213ENST00000574933 MINK1Q8N4C8 1332 aaPredicted RBP25.63■■□□□ 1.69
CCDC40-213ENST00000574933 CADPS2Q86UW7 1296 aa25.63■■□□□ 1.69
CCDC40-213ENST00000574933 TESK2Q96S53 571 aa25.63■■□□□ 1.69
CCDC40-213ENST00000574933 RGPD8O14715 1765 aaPredicted RBP25.63■■□□□ 1.69
CCDC40-213ENST00000574933 TULP4Q9NRJ4 1543 aa25.62■■□□□ 1.69
CCDC40-213ENST00000574933 SLC24A1O60721 1099 aa25.61■■□□□ 1.69
CCDC40-213ENST00000574933 ATF3P18847 181 aa25.6■■□□□ 1.69
CCDC40-213ENST00000574933 MST1RQ04912 1400 aa25.6■■□□□ 1.69
CCDC40-213ENST00000574933 USP32Q8NFA0 1604 aa25.59■■□□□ 1.69
CCDC40-213ENST00000574933 WASLO00401 505 aaPredicted RBP25.59■■□□□ 1.69
CCDC40-213ENST00000574933 HSPA5P11021 654 aaKnown RBP25.59■■□□□ 1.69
CCDC40-213ENST00000574933 HIRIP3Q9BW71 556 aaPredicted RBP25.58■■□□□ 1.69
CCDC40-213ENST00000574933 ITSN1Q15811 1721 aa25.57■■□□□ 1.68
CCDC40-213ENST00000574933 ANKARQ7Z5J8 1434 aa25.56■■□□□ 1.68
CCDC40-213ENST00000574933 EVC2Q86UK5 1308 aa25.56■■□□□ 1.68
CCDC40-213ENST00000574933 TOM1O60784 492 aa25.55■■□□□ 1.68
CCDC40-213ENST00000574933 TOPAZ1Q8N9V7 1692 aa25.55■■□□□ 1.68
CCDC40-213ENST00000574933 C1orf167Q5SNV9 1468 aa25.54■■□□□ 1.68
CCDC40-213ENST00000574933 CDK19Q9BWU1 502 aa25.54■■□□□ 1.68
CCDC40-213ENST00000574933 PUS7Q96PZ0 661 aaKnown RBP25.53■■□□□ 1.68
CCDC40-213ENST00000574933 SLAIN2Q9P270 581 aa25.53■■□□□ 1.68
CCDC40-213ENST00000574933 ATP7BP35670 1465 aa25.52■■□□□ 1.68
CCDC40-213ENST00000574933 UBAP1LF5GYI3 381 aa25.5■■□□□ 1.67
CCDC40-213ENST00000574933 KIF1AQ12756 1690 aa25.49■■□□□ 1.67
CCDC40-213ENST00000574933 ROBO1Q9Y6N7 1651 aa25.49■■□□□ 1.67
CCDC40-213ENST00000574933 PRR36Q9H6K5 1346 aa25.49■■□□□ 1.67
CCDC40-213ENST00000574933 TMF1P82094 1093 aa25.48■■□□□ 1.67
CCDC40-213ENST00000574933 DISP3Q9P2K9 1392 aa25.47■■□□□ 1.67
CCDC40-213ENST00000574933 NUDT16Q96DE0 195 aaKnown RBP25.46■■□□□ 1.67
CCDC40-213ENST00000574933 SRPK2P78362 688 aaKnown RBP25.45■■□□□ 1.66
CCDC40-213ENST00000574933 CABP2Q9NPB3 220 aa25.45■■□□□ 1.66
CCDC40-213ENST00000574933 NHSL1Q5SYE7 1610 aa25.45■■□□□ 1.66
CCDC40-213ENST00000574933 ATAD2Q6PL18 1390 aa25.44■■□□□ 1.66
CCDC40-213ENST00000574933 CDCA8Q53HL2 280 aa25.43■■□□□ 1.66
CCDC40-213ENST00000574933 CCDC61Q9Y6R9 512 aa25.43■■□□□ 1.66
CCDC40-213ENST00000574933 NUTM2FA1L443 756 aa25.42■■□□□ 1.66
CCDC40-213ENST00000574933 BRINP3Q76B58 766 aa25.42■■□□□ 1.66
CCDC40-213ENST00000574933 ORAI2Q96SN7 254 aa25.41■■□□□ 1.66
CCDC40-213ENST00000574933 MYOM1P52179 1685 aa25.4■■□□□ 1.66
CCDC40-213ENST00000574933 AHDC1Q5TGY3 1603 aaPredicted RBP25.4■■□□□ 1.66
CCDC40-213ENST00000574933 AKAP12Q02952 1782 aa25.39■■□□□ 1.66
CCDC40-213ENST00000574933 PLEKHG3A1L390 1219 aa25.39■■□□□ 1.66
CCDC40-213ENST00000574933 ESCO1Q5FWF5 840 aa25.39■■□□□ 1.66
CCDC40-213ENST00000574933 FBXO41Q8TF61 875 aa25.38■■□□□ 1.65
CCDC40-213ENST00000574933 PHF8Q9UPP1 1060 aa25.38■■□□□ 1.65
CCDC40-213ENST00000574933 PPIP5K1Q6PFW1 1433 aa25.37■■□□□ 1.65
CCDC40-213ENST00000574933 NINLQ9Y2I6 1382 aa25.37■■□□□ 1.65
CCDC40-213ENST00000574933 C11orf95C9JLR9 678 aaPredicted RBP25.36■■□□□ 1.65
CCDC40-213ENST00000574933 POLR3AO14802 1390 aaPredicted RBP25.35■■□□□ 1.65
CCDC40-213ENST00000574933 PIP4K2BP78356 416 aa25.35■■□□□ 1.65
CCDC40-213ENST00000574933 PHLPP1O60346 1717 aa25.34■■□□□ 1.65
CCDC40-213ENST00000574933 MON2Q7Z3U7 1717 aa25.32■■□□□ 1.64
CCDC40-213ENST00000574933 CABP1Q9NZU7 370 aa25.32■■□□□ 1.64
CCDC40-213ENST00000574933 TRPM3Q9HCF6 1732 aaPredicted RBP25.31■■□□□ 1.64
CCDC40-213ENST00000574933 NPHP3Q7Z494 1330 aa25.31■■□□□ 1.64
CCDC40-213ENST00000574933 PXDNQ92626 1479 aa25.3■■□□□ 1.64
CCDC40-213ENST00000574933 CD163L1Q9NR16 1453 aa25.3■■□□□ 1.64
CCDC40-213ENST00000574933 PMFBP1Q8TBY8 1022 aa25.3■■□□□ 1.64
CCDC40-213ENST00000574933 KIF7Q2M1P5 1343 aa25.3■■□□□ 1.64
CCDC40-213ENST00000574933 COL16A1Q07092 1604 aaPredicted RBP25.3■■□□□ 1.64
CCDC40-213ENST00000574933 CPSF1Q10570 1443 aaKnown RBP25.29■■□□□ 1.64
CCDC40-213ENST00000574933 ACEP12821 1306 aa25.29■■□□□ 1.64
CCDC40-213ENST00000574933 SCAF1Q9H7N4 1312 aaKnown RBP25.29■■□□□ 1.64
CCDC40-213ENST00000574933 CCDC7Q96M83 1385 aa25.29■■□□□ 1.64
CCDC40-213ENST00000574933 FOXO3O43524 673 aa25.28■■□□□ 1.64
CCDC40-213ENST00000574933 SLC12A5Q9H2X9 1139 aa25.28■■□□□ 1.64
CCDC40-213ENST00000574933 SOS2Q07890 1332 aaPredicted RBP25.28■■□□□ 1.64
CCDC40-213ENST00000574933 NGDNQ8NEJ9 315 aaKnown RBP25.27■■□□□ 1.64
CCDC40-213ENST00000574933 WASHC2AQ641Q2 1341 aa25.26■■□□□ 1.63
CCDC40-213ENST00000574933 BRD4O60885 1362 aaPredicted RBP25.26■■□□□ 1.63
CCDC40-213ENST00000574933 ZNF692Q9BU19 519 aaPredicted RBP25.25■■□□□ 1.63
CCDC40-213ENST00000574933 NRKQ7Z2Y5 1582 aa25.25■■□□□ 1.63
CCDC40-213ENST00000574933 TMC1Q8TDI8 760 aa25.24■■□□□ 1.63
CCDC40-213ENST00000574933 ALS2Q96Q42 1657 aa25.23■■□□□ 1.63
CCDC40-213ENST00000574933 USP6P35125 1406 aa25.23■■□□□ 1.63
CCDC40-213ENST00000574933 ANKRD36BQ8N2N9 1353 aa25.23■■□□□ 1.63
CCDC40-213ENST00000574933 DDX17Q92841 729 aaKnown RBP25.23■■□□□ 1.63
CCDC40-213ENST00000574933 SSH2Q76I76 1423 aa25.22■■□□□ 1.63
CCDC40-213ENST00000574933 SBNO1A3KN83 1393 aa25.22■■□□□ 1.63
CCDC40-213ENST00000574933 TERF2IPQ9NYB0 399 aa25.22■■□□□ 1.63
CCDC40-213ENST00000574933 A0A1W2PP64 1363 aa25.21■■□□□ 1.63
CCDC40-213ENST00000574933 PSME1Q06323 249 aa25.21■■□□□ 1.63
CCDC40-213ENST00000574933 KRT28Q7Z3Y7 464 aa25.21■■□□□ 1.63
CCDC40-213ENST00000574933 HDGFL2Q7Z4V5 671 aaPredicted RBP25.19■■□□□ 1.62
CCDC40-213ENST00000574933 KTN1Q86UP2 1357 aaKnown RBP25.18■■□□□ 1.62
CCDC40-213ENST00000574933 SHPRHQ149N8 1683 aa25.18■■□□□ 1.62
CCDC40-213ENST00000574933 HSPA1LP34931 641 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms