RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 C6orf229H3BNL8 230 aa7.46□□□□□ -1.22
NUP88-209ENST00000574855 GJA5P36382 358 aa7.46□□□□□ -1.22
NUP88-209ENST00000574855 SYMPKQ92797 1274 aaKnown RBP7.45□□□□□ -1.22
NUP88-209ENST00000574855 PRDM9Q9NQV7 894 aa7.45□□□□□ -1.22
NUP88-209ENST00000574855 PCDHGC3Q9UN70 934 aa7.45□□□□□ -1.22
NUP88-209ENST00000574855 MMP16P51512 607 aa7.44□□□□□ -1.22
NUP88-209ENST00000574855 RETREG3Q86VR2 466 aa7.44□□□□□ -1.22
NUP88-209ENST00000574855 FCF1Q9Y324 198 aaKnown RBP7.44□□□□□ -1.22
NUP88-209ENST00000574855 SPDYE5A6NIY4 337 aa7.43□□□□□ -1.22
NUP88-209ENST00000574855 RSBN1LQ6PCB5 846 aaPredicted RBP7.43□□□□□ -1.22
NUP88-209ENST00000574855 LIAT1Q6ZQX7 453 aa7.43□□□□□ -1.22
NUP88-209ENST00000574855 RIC3Q7Z5B4 369 aa7.43□□□□□ -1.22
NUP88-209ENST00000574855 RSPH6AQ9H0K4 717 aa7.43□□□□□ -1.22
NUP88-209ENST00000574855 KDM4CQ9H3R0 1056 aa7.43□□□□□ -1.22
NUP88-209ENST00000574855 SPTLC1O15269 473 aa7.42□□□□□ -1.22
NUP88-209ENST00000574855 DXOO77932 396 aaKnown RBP7.42□□□□□ -1.22
NUP88-209ENST00000574855 CD2BP2O95400 341 aaKnown RBP7.42□□□□□ -1.22
NUP88-209ENST00000574855 MTMR2Q13614 643 aa7.42□□□□□ -1.22
NUP88-209ENST00000574855 TPRNQ4KMQ1 711 aa7.42□□□□□ -1.22
NUP88-209ENST00000574855 PLA2G2CQ5R387 149 aa7.42□□□□□ -1.22
NUP88-209ENST00000574855 SPRYD7Q5W111 196 aa7.42□□□□□ -1.22
NUP88-209ENST00000574855 ZNF598Q86UK7 904 aaKnown RBP7.42□□□□□ -1.22
NUP88-209ENST00000574855 EMID1Q96A84 441 aaPredicted RBP7.42□□□□□ -1.22
NUP88-209ENST00000574855 GPBP1L1Q9HC44 474 aaPredicted RBP7.42□□□□□ -1.22
NUP88-209ENST00000574855 ZBTB24O43167 697 aaPredicted RBP7.41□□□□□ -1.22
NUP88-209ENST00000574855 GFRA3O60609 400 aa7.41□□□□□ -1.22
NUP88-209ENST00000574855 RPIAP49247 311 aa7.41□□□□□ -1.22
NUP88-209ENST00000574855 LAPTM4AQ15012 233 aa7.41□□□□□ -1.22
NUP88-209ENST00000574855 MYSM1Q5VVJ2 828 aa7.41□□□□□ -1.22
NUP88-209ENST00000574855 JUNDP17535 347 aa7.4□□□□□ -1.22
NUP88-209ENST00000574855 DDRGK1Q96HY6 314 aa7.4□□□□□ -1.22
NUP88-209ENST00000574855 PCDHB15Q9Y5E8 787 aa7.4□□□□□ -1.22
NUP88-209ENST00000574855 ZNF697Q5TEC3 545 aa7.39□□□□□ -1.23
NUP88-209ENST00000574855 PRPF38BQ5VTL8 546 aaKnown RBP7.39□□□□□ -1.23
NUP88-209ENST00000574855 CCDC24Q8N4L8 307 aa7.39□□□□□ -1.23
NUP88-209ENST00000574855 ZBTB3Q9H5J0 574 aa7.39□□□□□ -1.23
NUP88-209ENST00000574855 PDZRN3Q9UPQ7 1066 aa7.39□□□□□ -1.23
NUP88-209ENST00000574855 CSPP1Q1MSJ5 1256 aa7.38□□□□□ -1.23
NUP88-209ENST00000574855 PRR7Q8TB68 274 aa7.38□□□□□ -1.23
NUP88-209ENST00000574855 FAM117AQ9C073 453 aa7.38□□□□□ -1.23
NUP88-209ENST00000574855 NUTM2BA6NNL0 878 aaPredicted RBP7.37□□□□□ -1.23
NUP88-209ENST00000574855 NUTM2EB1AL46 878 aaPredicted RBP7.37□□□□□ -1.23
NUP88-209ENST00000574855 HRCP23327 699 aa7.37□□□□□ -1.23
NUP88-209ENST00000574855 TUSC1Q2TAM9 212 aa7.37□□□□□ -1.23
NUP88-209ENST00000574855 NUTM2DQ5VT03 806 aaPredicted RBP7.37□□□□□ -1.23
NUP88-209ENST00000574855 DESI1Q6ICB0 168 aa7.37□□□□□ -1.23
NUP88-209ENST00000574855 NUTM2AQ8IVF1 878 aaPredicted RBP7.37□□□□□ -1.23
NUP88-209ENST00000574855 LIMD1Q9UGP4 676 aa7.37□□□□□ -1.23
NUP88-209ENST00000574855 CLK2P49760 499 aaKnown RBP7.36□□□□□ -1.23
NUP88-209ENST00000574855 NEUROD2Q15784 382 aa7.36□□□□□ -1.23
NUP88-209ENST00000574855 NUDT12Q9BQG2 462 aa7.36□□□□□ -1.23
NUP88-209ENST00000574855 POLR3EQ9NVU0 708 aa7.36□□□□□ -1.23
NUP88-209ENST00000574855 NRG2O14511 850 aaPredicted RBP7.35□□□□□ -1.23
NUP88-209ENST00000574855 SKIV2LQ15477 1246 aaKnown RBP7.35□□□□□ -1.23
NUP88-209ENST00000574855 ATP1B4Q9UN42 357 aaPredicted RBP7.35□□□□□ -1.23
NUP88-209ENST00000574855 LILRB3O75022 631 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 CCNYL3P0C7X3 344 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 PRR20EP86478 221 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 PRR20CP86479 221 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 PRR20DP86480 221 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 PRR20BP86481 221 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 PRR20AP86496 221 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 PTPRNQ16849 979 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 Q6ZNB5 142 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 TRIM67Q6ZTA4 783 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 CABLES1Q8TDN4 633 aa7.34□□□□□ -1.23
NUP88-209ENST00000574855 CFAP99D6REC4 459 aa7.33□□□□□ -1.24
NUP88-209ENST00000574855 FOXC1Q12948 553 aa7.33□□□□□ -1.24
NUP88-209ENST00000574855 TRIM32Q13049 653 aa7.33□□□□□ -1.24
NUP88-209ENST00000574855 QPCTQ16769 361 aa7.33□□□□□ -1.24
NUP88-209ENST00000574855 SH3D19Q5HYK7 790 aa7.33□□□□□ -1.24
NUP88-209ENST00000574855 EVA1BQ9NVM1 165 aa7.33□□□□□ -1.24
NUP88-209ENST00000574855 PLEKHG3A1L390 1219 aa7.32□□□□□ -1.24
NUP88-209ENST00000574855 TNFRSF10AO00220 468 aa7.32□□□□□ -1.24
NUP88-209ENST00000574855 GDF9O60383 454 aa7.32□□□□□ -1.24
NUP88-209ENST00000574855 LYPD8Q6UX82 237 aa7.32□□□□□ -1.24
NUP88-209ENST00000574855 TSC1Q92574 1164 aa7.32□□□□□ -1.24
NUP88-209ENST00000574855 BRPF1P55201 1214 aaPredicted RBP7.31□□□□□ -1.24
NUP88-209ENST00000574855 PTCRAQ6ISU1 281 aaPredicted RBP7.31□□□□□ -1.24
NUP88-209ENST00000574855 KCNH2Q12809 1159 aa7.3□□□□□ -1.24
NUP88-209ENST00000574855 RTL5Q5HYW3 569 aaPredicted RBP7.3□□□□□ -1.24
NUP88-209ENST00000574855 IL27Q8NEV9 243 aa7.3□□□□□ -1.24
NUP88-209ENST00000574855 PKD2L1Q9P0L9 805 aa7.3□□□□□ -1.24
NUP88-209ENST00000574855 WNT7AO00755 349 aa7.29□□□□□ -1.24
NUP88-209ENST00000574855 CTHP32929 405 aa7.29□□□□□ -1.24
NUP88-209ENST00000574855 PROCA1Q8NCQ7 364 aaPredicted RBP7.29□□□□□ -1.24
NUP88-209ENST00000574855 HELBQ8NG08 1087 aaPredicted RBP7.29□□□□□ -1.24
NUP88-209ENST00000574855 WNT7BP56706 349 aa7.28□□□□□ -1.24
NUP88-209ENST00000574855 CYP4X1Q8N118 509 aa7.28□□□□□ -1.24
NUP88-209ENST00000574855 UNC93B1Q9H1C4 597 aa7.28□□□□□ -1.24
NUP88-209ENST00000574855 GOPCQ9HD26 462 aa7.28□□□□□ -1.24
NUP88-209ENST00000574855 DGAT1O75907 488 aa7.27□□□□□ -1.25
NUP88-209ENST00000574855 PKDCCQ504Y2 493 aa7.27□□□□□ -1.25
NUP88-209ENST00000574855 RC3H1Q5TC82 1133 aaKnown RBP7.27□□□□□ -1.25
NUP88-209ENST00000574855 TRAF7Q6Q0C0 670 aa7.27□□□□□ -1.25
NUP88-209ENST00000574855 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.27□□□□□ -1.25
NUP88-209ENST00000574855 PER1O15534 1290 aaPredicted RBP7.26□□□□□ -1.25
NUP88-209ENST00000574855 PRKCSHP14314 528 aaPredicted RBP7.26□□□□□ -1.25
NUP88-209ENST00000574855 MRGPRX2Q96LB1 330 aa7.26□□□□□ -1.25
NUP88-209ENST00000574855 PCMTD1Q96MG8 357 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms