RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 RCAN3Q9UKA8 241 aa15.83■□□□□ 0.12
CIITA-209ENST00000573309 MS4A1P11836 297 aa15.82■□□□□ 0.12
CIITA-209ENST00000573309 CABP1Q9NZU7 370 aa15.81■□□□□ 0.12
CIITA-209ENST00000573309 NFKBIBQ15653 356 aa15.81■□□□□ 0.12
CIITA-209ENST00000573309 PLEKHH1Q9ULM0 1364 aa15.81■□□□□ 0.12
CIITA-209ENST00000573309 LTKP29376 864 aa15.8■□□□□ 0.12
CIITA-209ENST00000573309 FRAT1Q92837 279 aaPredicted RBP15.8■□□□□ 0.12
CIITA-209ENST00000573309 LRPPRCP42704 1394 aaKnown RBP15.8■□□□□ 0.12
CIITA-209ENST00000573309 SYNMO15061 1565 aa15.8■□□□□ 0.12
CIITA-209ENST00000573309 CDK19Q9BWU1 502 aa15.8■□□□□ 0.12
CIITA-209ENST00000573309 EIF2AK4Q9P2K8 1649 aaKnown RBP15.79■□□□□ 0.12
CIITA-209ENST00000573309 KIF1BO60333 1816 aa15.79■□□□□ 0.12
CIITA-209ENST00000573309 CAMSAP1Q5T5Y3 1602 aa15.78■□□□□ 0.12
CIITA-209ENST00000573309 PLIN1O60240 522 aa15.78■□□□□ 0.12
CIITA-209ENST00000573309 GLI2P10070 1586 aa15.78■□□□□ 0.12
CIITA-209ENST00000573309 RPGRIP1LQ68CZ1 1315 aa15.78■□□□□ 0.12
CIITA-209ENST00000573309 EVC2Q86UK5 1308 aa15.78■□□□□ 0.12
CIITA-209ENST00000573309 EIF5BO60841 1220 aaKnown RBP15.78■□□□□ 0.12
CIITA-209ENST00000573309 PIK3C2GO75747 1445 aa15.78■□□□□ 0.12
CIITA-209ENST00000573309 ZRANB1Q9UGI0 708 aa15.77■□□□□ 0.11
CIITA-209ENST00000573309 ERVK-7P63135 1459 aa15.76■□□□□ 0.11
CIITA-209ENST00000573309 NSD3Q9BZ95 1437 aa15.76■□□□□ 0.11
CIITA-209ENST00000573309 STAC3Q96MF2 364 aa15.76■□□□□ 0.11
CIITA-209ENST00000573309 U2SURPO15042 1029 aaKnown RBP15.75■□□□□ 0.11
CIITA-209ENST00000573309 ADGRB3O60242 1522 aa15.75■□□□□ 0.11
CIITA-209ENST00000573309 CLTCQ00610 1675 aaKnown RBP15.75■□□□□ 0.11
CIITA-209ENST00000573309 KIF13AQ9H1H9 1805 aa15.75■□□□□ 0.11
CIITA-209ENST00000573309 APAF1O14727 1248 aa15.75■□□□□ 0.11
CIITA-209ENST00000573309 LMTK2Q8IWU2 1503 aa15.75■□□□□ 0.11
CIITA-209ENST00000573309 RIMS2Q9UQ26 1411 aa15.74■□□□□ 0.11
CIITA-209ENST00000573309 PARD3Q8TEW0 1356 aa15.74■□□□□ 0.11
CIITA-209ENST00000573309 MTHFSP49914 203 aa15.74■□□□□ 0.11
CIITA-209ENST00000573309 BRD4O60885 1362 aaPredicted RBP15.74■□□□□ 0.11
CIITA-209ENST00000573309 METP08581 1390 aa15.74■□□□□ 0.11
CIITA-209ENST00000573309 DDRGK1Q96HY6 314 aa15.73■□□□□ 0.11
CIITA-209ENST00000573309 TNRQ92752 1358 aa15.73■□□□□ 0.11
CIITA-209ENST00000573309 PMFBP1Q8TBY8 1022 aa15.73■□□□□ 0.11
CIITA-209ENST00000573309 CRBNQ96SW2 442 aa15.72■□□□□ 0.11
CIITA-209ENST00000573309 NUTM2GQ5VZR2 741 aa15.71■□□□□ 0.11
CIITA-209ENST00000573309 MYO5BQ9ULV0 1848 aa15.71■□□□□ 0.1
CIITA-209ENST00000573309 PIK3C2BO00750 1634 aa15.7■□□□□ 0.1
CIITA-209ENST00000573309 MYOM2P54296 1465 aa15.7■□□□□ 0.1
CIITA-209ENST00000573309 U2AF1L5P0DN76 240 aaPredicted RBP15.69■□□□□ 0.1
CIITA-209ENST00000573309 U2AF1Q01081 240 aaKnown RBP eCLIP15.69■□□□□ 0.1
CIITA-209ENST00000573309 YTHDC2Q9H6S0 1430 aaKnown RBP15.69■□□□□ 0.1
CIITA-209ENST00000573309 C14orf37Q86TY3 774 aa15.68■□□□□ 0.1
CIITA-209ENST00000573309 EID1Q9Y6B2 187 aa15.68■□□□□ 0.1
CIITA-209ENST00000573309 NEXMIFQ5QGS0 1516 aa15.68■□□□□ 0.1
CIITA-209ENST00000573309 ZBTB7CA1YPR0 619 aa15.67■□□□□ 0.1
CIITA-209ENST00000573309 FRAT2O75474 233 aaPredicted RBP15.67■□□□□ 0.1
CIITA-209ENST00000573309 ARHGAP31Q2M1Z3 1444 aa15.67■□□□□ 0.1
CIITA-209ENST00000573309 C20orf194Q5TEA3 1177 aa15.67■□□□□ 0.1
CIITA-209ENST00000573309 A2ML1A8K2U0 1454 aa15.67■□□□□ 0.1
CIITA-209ENST00000573309 DMRT2Q9Y5R5 561 aa15.67■□□□□ 0.1
CIITA-209ENST00000573309 NME9Q86XW9 330 aa15.66■□□□□ 0.1
CIITA-209ENST00000573309 DNAJC5Q9H3Z4 198 aa15.66■□□□□ 0.1
CIITA-209ENST00000573309 CGNL1Q0VF96 1302 aa15.65■□□□□ 0.1
CIITA-209ENST00000573309 PREX1Q8TCU6 1659 aa15.65■□□□□ 0.1
CIITA-209ENST00000573309 SPINK5Q9NQ38 1064 aaPredicted RBP15.65■□□□□ 0.1
CIITA-209ENST00000573309 AMOTL2Q9Y2J4 779 aa15.65■□□□□ 0.1
CIITA-209ENST00000573309 A0A1W2PP64 1363 aa15.64■□□□□ 0.09
CIITA-209ENST00000573309 PDE3BQ13370 1112 aa15.64■□□□□ 0.09
CIITA-209ENST00000573309 RRS1Q15050 365 aaKnown RBP15.64■□□□□ 0.09
CIITA-209ENST00000573309 ZMYM4Q5VZL5 1548 aa15.64■□□□□ 0.09
CIITA-209ENST00000573309 ADGRB1O14514 1584 aa15.64■□□□□ 0.09
CIITA-209ENST00000573309 HDGFL2Q7Z4V5 671 aaPredicted RBP15.64■□□□□ 0.09
CIITA-209ENST00000573309 FYB1O15117 783 aa15.63■□□□□ 0.09
CIITA-209ENST00000573309 NUDT16Q96DE0 195 aaKnown RBP15.63■□□□□ 0.09
CIITA-209ENST00000573309 IQGAP1P46940 1657 aa15.63■□□□□ 0.09
CIITA-209ENST00000573309 DAXXQ9UER7 740 aaPredicted RBP15.63■□□□□ 0.09
CIITA-209ENST00000573309 HMOX1P09601 288 aa15.62■□□□□ 0.09
CIITA-209ENST00000573309 TERF2IPQ9NYB0 399 aa15.62■□□□□ 0.09
CIITA-209ENST00000573309 KDM2BQ8NHM5 1336 aa15.62■□□□□ 0.09
CIITA-209ENST00000573309 HDGFP51858 240 aaKnown RBP15.62■□□□□ 0.09
CIITA-209ENST00000573309 C8orf34Q49A92 452 aa15.62■□□□□ 0.09
CIITA-209ENST00000573309 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.62■□□□□ 0.09
CIITA-209ENST00000573309 BCL2L13Q9BXK5 485 aa15.62■□□□□ 0.09
CIITA-209ENST00000573309 PPP6R1Q9UPN7 881 aa15.62■□□□□ 0.09
CIITA-209ENST00000573309 XPCQ01831 940 aaPredicted RBP15.61■□□□□ 0.09
CIITA-209ENST00000573309 NRXN1Q9ULB1 1477 aa15.61■□□□□ 0.09
CIITA-209ENST00000573309 PPLO60437 1756 aa15.61■□□□□ 0.09
CIITA-209ENST00000573309 EMILIN1Q9Y6C2 1016 aa15.61■□□□□ 0.09
CIITA-209ENST00000573309 ASXL1Q8IXJ9 1541 aa15.6■□□□□ 0.09
CIITA-209ENST00000573309 WASLO00401 505 aaPredicted RBP15.6■□□□□ 0.09
CIITA-209ENST00000573309 LMOD2Q6P5Q4 547 aa15.6■□□□□ 0.09
CIITA-209ENST00000573309 TMEM131LA2VDJ0 1609 aa15.6■□□□□ 0.09
CIITA-209ENST00000573309 ARHGEF40Q8TER5 1519 aa15.6■□□□□ 0.09
CIITA-209ENST00000573309 TMEM2Q9UHN6 1383 aa15.6■□□□□ 0.09
CIITA-209ENST00000573309 HSPA2P54652 639 aa15.59■□□□□ 0.09
CIITA-209ENST00000573309 KCNA6P17658 529 aa15.59■□□□□ 0.09
CIITA-209ENST00000573309 FAM43AQ8N2R8 423 aa15.59■□□□□ 0.09
CIITA-209ENST00000573309 ROBO2Q9HCK4 1378 aa15.59■□□□□ 0.09
CIITA-209ENST00000573309 FAM161AQ3B820 660 aa15.58■□□□□ 0.08
CIITA-209ENST00000573309 THEMISQ8N1K5 641 aaPredicted RBP15.58■□□□□ 0.08
CIITA-209ENST00000573309 RSPH6AQ9H0K4 717 aa15.58■□□□□ 0.08
CIITA-209ENST00000573309 TULP4Q9NRJ4 1543 aa15.57■□□□□ 0.08
CIITA-209ENST00000573309 ALKQ9UM73 1620 aa15.57■□□□□ 0.08
CIITA-209ENST00000573309 PTPRMP28827 1452 aa15.57■□□□□ 0.08
CIITA-209ENST00000573309 TCP11L2Q8N4U5 519 aa15.56■□□□□ 0.08
CIITA-209ENST00000573309 NGDNQ8NEJ9 315 aaKnown RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms