RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 CDC42BPBQ9Y5S2 1711 aa13.04□□□□□ -0.32
SMG6-213ENST00000573166 TMEM2Q9UHN6 1383 aa13.04□□□□□ -0.32
SMG6-213ENST00000573166 NPHP1O15259 732 aa13.04□□□□□ -0.32
SMG6-213ENST00000573166 PRDM11Q9NQV5 511 aa13.04□□□□□ -0.32
SMG6-213ENST00000573166 GCC2Q8IWJ2 1684 aa13.03□□□□□ -0.32
SMG6-213ENST00000573166 ZC3H6P61129 1189 aaKnown RBP13.03□□□□□ -0.32
SMG6-213ENST00000573166 STRN4Q9NRL3 753 aa13.03□□□□□ -0.32
SMG6-213ENST00000573166 MSH6P52701 1360 aa13.03□□□□□ -0.32
SMG6-213ENST00000573166 NSD3Q9BZ95 1437 aa13.03□□□□□ -0.32
SMG6-213ENST00000573166 TEFQ10587 303 aa13.02□□□□□ -0.32
SMG6-213ENST00000573166 RRS1Q15050 365 aaKnown RBP13.01□□□□□ -0.33
SMG6-213ENST00000573166 KDM5DQ9BY66 1539 aa13.01□□□□□ -0.33
SMG6-213ENST00000573166 RALGAPBQ86X10 1494 aa13.01□□□□□ -0.33
SMG6-213ENST00000573166 NME9Q86XW9 330 aa13.01□□□□□ -0.33
SMG6-213ENST00000573166 C19orf44Q9H6X5 657 aa13□□□□□ -0.33
SMG6-213ENST00000573166 MS4A1P11836 297 aa13□□□□□ -0.33
SMG6-213ENST00000573166 RIPK4P57078 832 aa13□□□□□ -0.33
SMG6-213ENST00000573166 RTL5Q5HYW3 569 aaPredicted RBP13□□□□□ -0.33
SMG6-213ENST00000573166 DISP3Q9P2K9 1392 aa13□□□□□ -0.33
SMG6-213ENST00000573166 LRRIQ1Q96JM4 1722 aa12.99□□□□□ -0.33
SMG6-213ENST00000573166 ACEP12821 1306 aa12.99□□□□□ -0.33
SMG6-213ENST00000573166 KRT28Q7Z3Y7 464 aa12.99□□□□□ -0.33
SMG6-213ENST00000573166 UBAP1LF5GYI3 381 aa12.99□□□□□ -0.33
SMG6-213ENST00000573166 STK31Q9BXU1 1019 aa12.99□□□□□ -0.33
SMG6-213ENST00000573166 ELL2O00472 640 aaPredicted RBP12.99□□□□□ -0.33
SMG6-213ENST00000573166 RUNDC1Q96C34 613 aa12.99□□□□□ -0.33
SMG6-213ENST00000573166 CHMP4AQ9BY43 222 aa12.99□□□□□ -0.33
SMG6-213ENST00000573166 ADAMTS8Q9UP79 889 aa12.99□□□□□ -0.33
SMG6-213ENST00000573166 SYTL4Q96C24 671 aaPredicted RBP12.98□□□□□ -0.33
SMG6-213ENST00000573166 YTHDC2Q9H6S0 1430 aaKnown RBP12.98□□□□□ -0.33
SMG6-213ENST00000573166 TOM1O60784 492 aa12.98□□□□□ -0.33
SMG6-213ENST00000573166 ANP32EQ9BTT0 268 aa12.98□□□□□ -0.33
SMG6-213ENST00000573166 BRD4O60885 1362 aaPredicted RBP12.98□□□□□ -0.33
SMG6-213ENST00000573166 PDE3BQ13370 1112 aa12.97□□□□□ -0.33
SMG6-213ENST00000573166 RCAN3Q9UKA8 241 aa12.97□□□□□ -0.33
SMG6-213ENST00000573166 DIP2BQ9P265 1576 aa12.97□□□□□ -0.33
SMG6-213ENST00000573166 KCNH5Q8NCM2 988 aa12.97□□□□□ -0.33
SMG6-213ENST00000573166 PLXNC1O60486 1568 aa12.97□□□□□ -0.33
SMG6-213ENST00000573166 TOM1L2Q6ZVM7 507 aa12.97□□□□□ -0.33
SMG6-213ENST00000573166 IPO8O15397 1037 aaKnown RBP12.96□□□□□ -0.33
SMG6-213ENST00000573166 PRKAR2BP31323 418 aa12.96□□□□□ -0.34
SMG6-213ENST00000573166 LRPPRCP42704 1394 aaKnown RBP12.96□□□□□ -0.34
SMG6-213ENST00000573166 SULT6B1Q6IMI4 303 aa12.96□□□□□ -0.34
SMG6-213ENST00000573166 TESK2Q96S53 571 aa12.96□□□□□ -0.34
SMG6-213ENST00000573166 SMC4Q9NTJ3 1288 aa12.96□□□□□ -0.34
SMG6-213ENST00000573166 ABCC3O15438 1527 aa12.95□□□□□ -0.34
SMG6-213ENST00000573166 CHMP4BQ9H444 224 aaKnown RBP12.95□□□□□ -0.34
SMG6-213ENST00000573166 ERVK-7P63135 1459 aa12.95□□□□□ -0.34
SMG6-213ENST00000573166 UGGT1Q9NYU2 1555 aa12.95□□□□□ -0.34
SMG6-213ENST00000573166 GLI2P10070 1586 aa12.94□□□□□ -0.34
SMG6-213ENST00000573166 ADAMTS2O95450 1211 aa12.93□□□□□ -0.34
SMG6-213ENST00000573166 TTC5Q8N0Z6 440 aa12.93□□□□□ -0.34
SMG6-213ENST00000573166 SMG6Q86US8 1419 aaKnown RBP12.93□□□□□ -0.34
SMG6-213ENST00000573166 PRDM15P57071 1507 aaPredicted RBP12.93□□□□□ -0.34
SMG6-213ENST00000573166 TCP11L2Q8N4U5 519 aa12.93□□□□□ -0.34
SMG6-213ENST00000573166 EFCAB6Q5THR3 1501 aa12.93□□□□□ -0.34
SMG6-213ENST00000573166 NPHP3Q7Z494 1330 aa12.93□□□□□ -0.34
SMG6-213ENST00000573166 NGEFQ8N5V2 710 aa12.93□□□□□ -0.34
SMG6-213ENST00000573166 EIF2AK4Q9P2K8 1649 aaKnown RBP12.92□□□□□ -0.34
SMG6-213ENST00000573166 E9PSI1 815 aa12.92□□□□□ -0.34
SMG6-213ENST00000573166 NINLQ9Y2I6 1382 aa12.92□□□□□ -0.34
SMG6-213ENST00000573166 TATP17735 454 aaPredicted RBP12.92□□□□□ -0.34
SMG6-213ENST00000573166 PLEKHO1Q53GL0 409 aaPredicted RBP12.91□□□□□ -0.34
SMG6-213ENST00000573166 PTPRTO14522 1441 aa12.91□□□□□ -0.34
SMG6-213ENST00000573166 ARHGAP31Q2M1Z3 1444 aa12.91□□□□□ -0.34
SMG6-213ENST00000573166 EMILIN1Q9Y6C2 1016 aa12.91□□□□□ -0.34
SMG6-213ENST00000573166 LMTK3Q96Q04 1460 aa12.91□□□□□ -0.34
SMG6-213ENST00000573166 CLUAP1Q96AJ1 413 aa12.91□□□□□ -0.34
SMG6-213ENST00000573166 NLRP1Q9C000 1473 aa12.9□□□□□ -0.34
SMG6-213ENST00000573166 COL17A1Q9UMD9 1497 aaPredicted RBP12.9□□□□□ -0.34
SMG6-213ENST00000573166 RBM19Q9Y4C8 960 aaKnown RBP12.9□□□□□ -0.34
SMG6-213ENST00000573166 PPIP5K1Q6PFW1 1433 aa12.9□□□□□ -0.34
SMG6-213ENST00000573166 GAS2L2Q8NHY3 880 aa12.9□□□□□ -0.34
SMG6-213ENST00000573166 BCL2L13Q9BXK5 485 aa12.9□□□□□ -0.34
SMG6-213ENST00000573166 ZBED9Q6R2W3 1325 aa12.9□□□□□ -0.34
SMG6-213ENST00000573166 TTC21BQ7Z4L5 1316 aa12.89□□□□□ -0.35
SMG6-213ENST00000573166 TRPM2O94759 1503 aa12.89□□□□□ -0.35
SMG6-213ENST00000573166 OS9Q13438 667 aaPredicted RBP12.89□□□□□ -0.35
SMG6-213ENST00000573166 SLC4A10Q6U841 1118 aa12.89□□□□□ -0.35
SMG6-213ENST00000573166 PLA2R1Q13018 1463 aa12.89□□□□□ -0.35
SMG6-213ENST00000573166 EIF2S2P20042 333 aaKnown RBP12.89□□□□□ -0.35
SMG6-213ENST00000573166 CCDC184Q52MB2 194 aa12.89□□□□□ -0.35
SMG6-213ENST00000573166 PHF23Q9BUL5 403 aaPredicted RBP12.89□□□□□ -0.35
SMG6-213ENST00000573166 SPATA31E1Q6ZUB1 1445 aa12.89□□□□□ -0.35
SMG6-213ENST00000573166 ABCC11Q96J66 1382 aa12.88□□□□□ -0.35
SMG6-213ENST00000573166 DDX54Q8TDD1 881 aaKnown RBP12.88□□□□□ -0.35
SMG6-213ENST00000573166 TSPYL4Q9UJ04 414 aa12.88□□□□□ -0.35
SMG6-213ENST00000573166 FYB1O15117 783 aa12.88□□□□□ -0.35
SMG6-213ENST00000573166 ITPRIPQ8IWB1 547 aa12.88□□□□□ -0.35
SMG6-213ENST00000573166 PNISRQ8TF01 805 aaKnown RBP12.88□□□□□ -0.35
SMG6-213ENST00000573166 PUS7Q96PZ0 661 aaKnown RBP12.88□□□□□ -0.35
SMG6-213ENST00000573166 DIP2CQ9Y2E4 1556 aa12.88□□□□□ -0.35
SMG6-213ENST00000573166 FBLN1P23142 703 aa12.88□□□□□ -0.35
SMG6-213ENST00000573166 ORAI2Q96SN7 254 aa12.88□□□□□ -0.35
SMG6-213ENST00000573166 GNAI1P63096 354 aa12.87□□□□□ -0.35
SMG6-213ENST00000573166 ZNF530Q6P9A1 599 aaPredicted RBP12.87□□□□□ -0.35
SMG6-213ENST00000573166 NGLY1Q96IV0 654 aa12.87□□□□□ -0.35
SMG6-213ENST00000573166 UPF2Q9HAU5 1272 aaKnown RBP12.87□□□□□ -0.35
SMG6-213ENST00000573166 ANKRD36BQ8N2N9 1353 aa12.87□□□□□ -0.35
SMG6-213ENST00000573166 NECTIN2Q92692 538 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms