RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 RBM33Q96EV2 1170 aaKnown RBP17.33■□□□□ 0.36
SF3B3-208ENST00000567250 C19orf44Q9H6X5 657 aa17.33■□□□□ 0.36
SF3B3-208ENST00000567250 FMN2Q9NZ56 1722 aa17.33■□□□□ 0.36
SF3B3-208ENST00000567250 NBPF8Q3BBV2 869 aa17.32■□□□□ 0.36
SF3B3-208ENST00000567250 CADPS2Q86UW7 1296 aa17.32■□□□□ 0.36
SF3B3-208ENST00000567250 FBXO41Q8TF61 875 aa17.32■□□□□ 0.36
SF3B3-208ENST00000567250 POGKQ9P215 609 aa17.32■□□□□ 0.36
SF3B3-208ENST00000567250 TRAK1Q9UPV9 953 aa17.32■□□□□ 0.36
SF3B3-208ENST00000567250 MSH5O43196 834 aa17.31■□□□□ 0.36
SF3B3-208ENST00000567250 ATF3P18847 181 aa17.31■□□□□ 0.36
SF3B3-208ENST00000567250 NBPF1Q3BBV0 1214 aa17.31■□□□□ 0.36
SF3B3-208ENST00000567250 PRAM1Q96QH2 718 aa17.31■□□□□ 0.36
SF3B3-208ENST00000567250 PLEKHH1Q9ULM0 1364 aa17.3■□□□□ 0.36
SF3B3-208ENST00000567250 ROBO1Q9Y6N7 1651 aa17.29■□□□□ 0.36
SF3B3-208ENST00000567250 ITSN1Q15811 1721 aa17.28■□□□□ 0.36
SF3B3-208ENST00000567250 WAPLQ7Z5K2 1190 aa17.28■□□□□ 0.36
SF3B3-208ENST00000567250 CARD11Q9BXL7 1154 aa17.28■□□□□ 0.36
SF3B3-208ENST00000567250 MST1RQ04912 1400 aa17.27■□□□□ 0.35
SF3B3-208ENST00000567250 CENPJQ9HC77 1338 aaPredicted RBP17.26■□□□□ 0.35
SF3B3-208ENST00000567250 SCAF1Q9H7N4 1312 aaKnown RBP17.25■□□□□ 0.35
SF3B3-208ENST00000567250 KIF1AQ12756 1690 aa17.25■□□□□ 0.35
SF3B3-208ENST00000567250 SAFB2Q14151 953 aaKnown RBP eCLIP17.24■□□□□ 0.35
SF3B3-208ENST00000567250 TULP4Q9NRJ4 1543 aa17.23■□□□□ 0.35
SF3B3-208ENST00000567250 ANKARQ7Z5J8 1434 aa17.22■□□□□ 0.35
SF3B3-208ENST00000567250 NHSL1Q5SYE7 1610 aa17.22■□□□□ 0.35
SF3B3-208ENST00000567250 PIP4K2BP78356 416 aa17.22■□□□□ 0.35
SF3B3-208ENST00000567250 SLAIN2Q9P270 581 aa17.22■□□□□ 0.35
SF3B3-208ENST00000567250 SBNO2Q9Y2G9 1366 aa17.22■□□□□ 0.35
SF3B3-208ENST00000567250 C1orf167Q5SNV9 1468 aa17.22■□□□□ 0.35
SF3B3-208ENST00000567250 RGPD8O14715 1765 aaPredicted RBP17.22■□□□□ 0.35
SF3B3-208ENST00000567250 MINK1Q8N4C8 1332 aaPredicted RBP17.21■□□□□ 0.35
SF3B3-208ENST00000567250 USP32Q8NFA0 1604 aa17.21■□□□□ 0.35
SF3B3-208ENST00000567250 TOPAZ1Q8N9V7 1692 aa17.2■□□□□ 0.34
SF3B3-208ENST00000567250 USP47Q96K76 1375 aa17.2■□□□□ 0.34
SF3B3-208ENST00000567250 PHLPP1O60346 1717 aa17.2■□□□□ 0.34
SF3B3-208ENST00000567250 AHDC1Q5TGY3 1603 aaPredicted RBP17.2■□□□□ 0.34
SF3B3-208ENST00000567250 HIRIP3Q9BW71 556 aaPredicted RBP17.18■□□□□ 0.34
SF3B3-208ENST00000567250 WASLO00401 505 aaPredicted RBP17.17■□□□□ 0.34
SF3B3-208ENST00000567250 ATP7BP35670 1465 aa17.17■□□□□ 0.34
SF3B3-208ENST00000567250 SLC24A1O60721 1099 aa17.16■□□□□ 0.34
SF3B3-208ENST00000567250 EVC2Q86UK5 1308 aa17.15■□□□□ 0.34
SF3B3-208ENST00000567250 COL16A1Q07092 1604 aaPredicted RBP17.14■□□□□ 0.33
SF3B3-208ENST00000567250 BRINP3Q76B58 766 aa17.13■□□□□ 0.33
SF3B3-208ENST00000567250 NUTM2FA1L443 756 aa17.12■□□□□ 0.33
SF3B3-208ENST00000567250 ESCO1Q5FWF5 840 aa17.12■□□□□ 0.33
SF3B3-208ENST00000567250 SRPK2P78362 688 aaKnown RBP17.11■□□□□ 0.33
SF3B3-208ENST00000567250 ILDR1Q86SU0 546 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-208ENST00000567250 CDK19Q9BWU1 502 aa17.11■□□□□ 0.33
SF3B3-208ENST00000567250 ST20-MTHFSA0A0A6YYL1 179 aa17.1■□□□□ 0.33
SF3B3-208ENST00000567250 NPHP3Q7Z494 1330 aa17.1■□□□□ 0.33
SF3B3-208ENST00000567250 ATAD2Q6PL18 1390 aa17.1■□□□□ 0.33
SF3B3-208ENST00000567250 EIF4G2P78344 907 aaKnown RBP eCLIP17.09■□□□□ 0.33
SF3B3-208ENST00000567250 ORAI2Q96SN7 254 aa17.09■□□□□ 0.33
SF3B3-208ENST00000567250 SHPRHQ149N8 1683 aa17.09■□□□□ 0.33
SF3B3-208ENST00000567250 PRR36Q9H6K5 1346 aa17.07■□□□□ 0.32
SF3B3-208ENST00000567250 HSPA1LP34931 641 aa17.07■□□□□ 0.32
SF3B3-208ENST00000567250 ZEB1P37275 1124 aaPredicted RBP17.07■□□□□ 0.32
SF3B3-208ENST00000567250 NUDT16Q96DE0 195 aaKnown RBP17.07■□□□□ 0.32
SF3B3-208ENST00000567250 PHF8Q9UPP1 1060 aa17.07■□□□□ 0.32
SF3B3-208ENST00000567250 PPIP5K1Q6PFW1 1433 aa17.06■□□□□ 0.32
SF3B3-208ENST00000567250 TMF1P82094 1093 aa17.06■□□□□ 0.32
SF3B3-208ENST00000567250 AKAP12Q02952 1782 aa17.06■□□□□ 0.32
SF3B3-208ENST00000567250 PXDNQ92626 1479 aa17.05■□□□□ 0.32
SF3B3-208ENST00000567250 CDCA8Q53HL2 280 aa17.05■□□□□ 0.32
SF3B3-208ENST00000567250 TESK2Q96S53 571 aa17.05■□□□□ 0.32
SF3B3-208ENST00000567250 CCDC61Q9Y6R9 512 aa17.05■□□□□ 0.32
SF3B3-208ENST00000567250 TRPM3Q9HCF6 1732 aaPredicted RBP17.04■□□□□ 0.32
SF3B3-208ENST00000567250 PUS7Q96PZ0 661 aaKnown RBP17.04■□□□□ 0.32
SF3B3-208ENST00000567250 CABP2Q9NPB3 220 aa17.04■□□□□ 0.32
SF3B3-208ENST00000567250 NINLQ9Y2I6 1382 aa17.03■□□□□ 0.32
SF3B3-208ENST00000567250 MON2Q7Z3U7 1717 aa17.03■□□□□ 0.32
SF3B3-208ENST00000567250 POLR3AO14802 1390 aaPredicted RBP17.02■□□□□ 0.32
SF3B3-208ENST00000567250 SOS2Q07890 1332 aaPredicted RBP17.02■□□□□ 0.32
SF3B3-208ENST00000567250 FOXO3O43524 673 aa17.02■□□□□ 0.32
SF3B3-208ENST00000567250 COL22A1Q8NFW1 1626 aaPredicted RBP17.02■□□□□ 0.31
SF3B3-208ENST00000567250 JCADQ9P266 1359 aa17.02■□□□□ 0.31
SF3B3-208ENST00000567250 DISP3Q9P2K9 1392 aa17.02■□□□□ 0.31
SF3B3-208ENST00000567250 MYOM1P52179 1685 aa17.01■□□□□ 0.31
SF3B3-208ENST00000567250 HSPA5P11021 654 aaKnown RBP17.01■□□□□ 0.31
SF3B3-208ENST00000567250 NGDNQ8NEJ9 315 aaKnown RBP17.01■□□□□ 0.31
SF3B3-208ENST00000567250 PMFBP1Q8TBY8 1022 aa17.01■□□□□ 0.31
SF3B3-208ENST00000567250 ALS2Q96Q42 1657 aa17.01■□□□□ 0.31
SF3B3-208ENST00000567250 PSME1Q06323 249 aa17■□□□□ 0.31
SF3B3-208ENST00000567250 TNS3Q68CZ2 1445 aa17■□□□□ 0.31
SF3B3-208ENST00000567250 NRKQ7Z2Y5 1582 aa17■□□□□ 0.31
SF3B3-208ENST00000567250 LRRC59Q96AG4 307 aaKnown RBP17■□□□□ 0.31
SF3B3-208ENST00000567250 PLEKHG3A1L390 1219 aa16.99■□□□□ 0.31
SF3B3-208ENST00000567250 DDX17Q92841 729 aaKnown RBP16.98■□□□□ 0.31
SF3B3-208ENST00000567250 SBNO1A3KN83 1393 aa16.98■□□□□ 0.31
SF3B3-208ENST00000567250 BRD4O60885 1362 aaPredicted RBP16.98■□□□□ 0.31
SF3B3-208ENST00000567250 ACEP12821 1306 aa16.97■□□□□ 0.31
SF3B3-208ENST00000567250 PPP4R3CPQ6ZMV5 832 aa16.97■□□□□ 0.31
SF3B3-208ENST00000567250 ABCA3Q99758 1704 aa16.96■□□□□ 0.31
SF3B3-208ENST00000567250 KRT28Q7Z3Y7 464 aa16.96■□□□□ 0.31
SF3B3-208ENST00000567250 CABP1Q9NZU7 370 aa16.96■□□□□ 0.31
SF3B3-208ENST00000567250 ARHGEF10O15013 1369 aa16.96■□□□□ 0.31
SF3B3-208ENST00000567250 USP6P35125 1406 aa16.96■□□□□ 0.3
SF3B3-208ENST00000567250 MED1Q15648 1581 aaPredicted RBP16.95■□□□□ 0.3
SF3B3-208ENST00000567250 PNPLA6Q8IY17 1366 aa16.95■□□□□ 0.3
SF3B3-208ENST00000567250 XPCQ01831 940 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms