RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PTPRMP28827 1452 aa8.22□□□□□ -1.09
CLN3-223ENST00000566472 NKTRP30414 1462 aaKnown RBP8.22□□□□□ -1.09
CLN3-223ENST00000566472 E9PSI1 815 aa8.22□□□□□ -1.09
CLN3-223ENST00000566472 TCERG1O14776 1098 aaKnown RBP8.22□□□□□ -1.09
CLN3-223ENST00000566472 SLFN5Q08AF3 891 aa8.22□□□□□ -1.09
CLN3-223ENST00000566472 EXOC6Q8TAG9 804 aa8.22□□□□□ -1.09
CLN3-223ENST00000566472 SALL2Q9Y467 1007 aaPredicted RBP8.22□□□□□ -1.09
CLN3-223ENST00000566472 ARHGEF40Q8TER5 1519 aa8.22□□□□□ -1.09
CLN3-223ENST00000566472 IQSEC2Q5JU85 1478 aa8.21□□□□□ -1.09
CLN3-223ENST00000566472 MS4A1P11836 297 aa8.21□□□□□ -1.1
CLN3-223ENST00000566472 MORC1Q86VD1 984 aa8.21□□□□□ -1.1
CLN3-223ENST00000566472 ABCC11Q96J66 1382 aa8.21□□□□□ -1.1
CLN3-223ENST00000566472 SHPRHQ149N8 1683 aa8.21□□□□□ -1.1
CLN3-223ENST00000566472 YTHDC2Q9H6S0 1430 aaKnown RBP8.2□□□□□ -1.1
CLN3-223ENST00000566472 FAM69CQ0P6D2 419 aa8.2□□□□□ -1.1
CLN3-223ENST00000566472 TMEM132EQ6IEE7 984 aa8.2□□□□□ -1.1
CLN3-223ENST00000566472 CFAP53Q96M91 514 aa8.2□□□□□ -1.1
CLN3-223ENST00000566472 ALKQ9UM73 1620 aa8.19□□□□□ -1.1
CLN3-223ENST00000566472 SENP3-EIF4A1A0A087X0R7 540 aa8.19□□□□□ -1.1
CLN3-223ENST00000566472 CYB5RLQ6IPT4 315 aa8.19□□□□□ -1.1
CLN3-223ENST00000566472 RUNDC1Q96C34 613 aa8.19□□□□□ -1.1
CLN3-223ENST00000566472 SLC12A5Q9H2X9 1139 aa8.19□□□□□ -1.1
CLN3-223ENST00000566472 A2ML1A8K2U0 1454 aa8.19□□□□□ -1.1
CLN3-223ENST00000566472 CCDC27Q2M243 656 aa8.18□□□□□ -1.1
CLN3-223ENST00000566472 CRBNQ96SW2 442 aa8.18□□□□□ -1.1
CLN3-223ENST00000566472 PHF23Q9BUL5 403 aaPredicted RBP8.18□□□□□ -1.1
CLN3-223ENST00000566472 ADGRB2O60241 1585 aa8.18□□□□□ -1.1
CLN3-223ENST00000566472 APAF1O14727 1248 aa8.17□□□□□ -1.1
CLN3-223ENST00000566472 ERICH6Q7L0X2 663 aa8.17□□□□□ -1.1
CLN3-223ENST00000566472 TERF2IPQ9NYB0 399 aa8.17□□□□□ -1.1
CLN3-223ENST00000566472 RIMS2Q9UQ26 1411 aa8.17□□□□□ -1.1
CLN3-223ENST00000566472 ANKRD26Q9UPS8 1709 aa8.17□□□□□ -1.1
CLN3-223ENST00000566472 A0A1W2PP64 1363 aa8.16□□□□□ -1.1
CLN3-223ENST00000566472 MSH5O43196 834 aa8.16□□□□□ -1.1
CLN3-223ENST00000566472 ATP7BP35670 1465 aa8.16□□□□□ -1.1
CLN3-223ENST00000566472 CENPQQ7L2Z9 268 aaPredicted RBP8.16□□□□□ -1.1
CLN3-223ENST00000566472 WDR63Q8IWG1 891 aa8.16□□□□□ -1.1
CLN3-223ENST00000566472 CCDC146Q8IYE0 955 aa8.16□□□□□ -1.1
CLN3-223ENST00000566472 COL3A1P02461 1466 aaPredicted RBP8.15□□□□□ -1.1
CLN3-223ENST00000566472 NLRP1Q9C000 1473 aa8.15□□□□□ -1.1
CLN3-223ENST00000566472 CD163L1Q9NR16 1453 aa8.15□□□□□ -1.1
CLN3-223ENST00000566472 KDM2BQ8NHM5 1336 aa8.15□□□□□ -1.1
CLN3-223ENST00000566472 ANP32AP39687 249 aaKnown RBP8.15□□□□□ -1.1
CLN3-223ENST00000566472 AAMPQ13685 434 aa8.15□□□□□ -1.1
CLN3-223ENST00000566472 PDE3AQ14432 1141 aa8.15□□□□□ -1.1
CLN3-223ENST00000566472 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.15□□□□□ -1.1
CLN3-223ENST00000566472 MYO5BQ9ULV0 1848 aa8.15□□□□□ -1.11
CLN3-223ENST00000566472 SETD1AO15047 1707 aaKnown RBP8.15□□□□□ -1.11
CLN3-223ENST00000566472 PLIN1O60240 522 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 MTHFSP49914 203 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 SRPK2P78362 688 aaKnown RBP8.14□□□□□ -1.11
CLN3-223ENST00000566472 FBXO31Q5XUX0 539 aaPredicted RBP8.14□□□□□ -1.11
CLN3-223ENST00000566472 HDGFL2Q7Z4V5 671 aaPredicted RBP8.14□□□□□ -1.11
CLN3-223ENST00000566472 WWC1Q8IX03 1113 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 SIRT1Q96EB6 747 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 PRAM1Q96QH2 718 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 CABP2Q9NPB3 220 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 POGKQ9P215 609 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 STAG3Q9UJ98 1225 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 KNDC1Q76NI1 1749 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 CDC42BPGQ6DT37 1551 aa8.14□□□□□ -1.11
CLN3-223ENST00000566472 CFAP65Q6ZU64 1925 aaKnown RBP8.13□□□□□ -1.11
CLN3-223ENST00000566472 TECPR2O15040 1411 aa8.13□□□□□ -1.11
CLN3-223ENST00000566472 FAM135BQ49AJ0 1406 aa8.13□□□□□ -1.11
CLN3-223ENST00000566472 CT47B1P0C2W7 299 aaPredicted RBP8.13□□□□□ -1.11
CLN3-223ENST00000566472 NUTM2DQ5VT03 806 aaPredicted RBP8.13□□□□□ -1.11
CLN3-223ENST00000566472 PNPLA6Q8IY17 1366 aa8.12□□□□□ -1.11
CLN3-223ENST00000566472 HDGFP51858 240 aaKnown RBP8.12□□□□□ -1.11
CLN3-223ENST00000566472 TCP11L2Q8N4U5 519 aa8.12□□□□□ -1.11
CLN3-223ENST00000566472 PNNQ9H307 717 aaKnown RBP8.12□□□□□ -1.11
CLN3-223ENST00000566472 MYH16Q9H6N6 1097 aa8.12□□□□□ -1.11
CLN3-223ENST00000566472 SPINK5Q9NQ38 1064 aaPredicted RBP8.12□□□□□ -1.11
CLN3-223ENST00000566472 STK26Q9P289 416 aa8.12□□□□□ -1.11
CLN3-223ENST00000566472 NOP58Q9Y2X3 529 aaKnown RBP8.12□□□□□ -1.11
CLN3-223ENST00000566472 CPS1P31327 1500 aa8.12□□□□□ -1.11
CLN3-223ENST00000566472 NRXN3Q9Y4C0 1643 aa8.11□□□□□ -1.11
CLN3-223ENST00000566472 IL16Q14005 1332 aa8.11□□□□□ -1.11
CLN3-223ENST00000566472 MINK1Q8N4C8 1332 aaPredicted RBP8.11□□□□□ -1.11
CLN3-223ENST00000566472 PDE4AP27815 886 aa8.11□□□□□ -1.11
CLN3-223ENST00000566472 C20orf194Q5TEA3 1177 aa8.11□□□□□ -1.11
CLN3-223ENST00000566472 IPO9Q96P70 1041 aaKnown RBP8.11□□□□□ -1.11
CLN3-223ENST00000566472 BACH2Q9BYV9 841 aa8.11□□□□□ -1.11
CLN3-223ENST00000566472 TNRQ92752 1358 aa8.1□□□□□ -1.11
CLN3-223ENST00000566472 KIF20BQ96Q89 1820 aa8.1□□□□□ -1.11
CLN3-223ENST00000566472 CDK19Q9BWU1 502 aa8.1□□□□□ -1.11
CLN3-223ENST00000566472 EDC4Q6P2E9 1401 aaKnown RBP8.1□□□□□ -1.11
CLN3-223ENST00000566472 KIF13AQ9H1H9 1805 aa8.1□□□□□ -1.11
CLN3-223ENST00000566472 ZMYM3Q14202 1370 aa8.1□□□□□ -1.11
CLN3-223ENST00000566472 TSPOAP1O95153 1857 aa8.09□□□□□ -1.11
CLN3-223ENST00000566472 FYB1O15117 783 aa8.09□□□□□ -1.11
CLN3-223ENST00000566472 U2AF1L5P0DN76 240 aaPredicted RBP8.09□□□□□ -1.11
CLN3-223ENST00000566472 U2AF1Q01081 240 aaKnown RBP eCLIP8.09□□□□□ -1.11
CLN3-223ENST00000566472 ESF1Q9H501 851 aaKnown RBP8.09□□□□□ -1.11
CLN3-223ENST00000566472 DMRT2Q9Y5R5 561 aa8.09□□□□□ -1.11
CLN3-223ENST00000566472 CPSF1Q10570 1443 aaKnown RBP8.09□□□□□ -1.11
CLN3-223ENST00000566472 AATKQ6ZMQ8 1374 aa8.09□□□□□ -1.12
CLN3-223ENST00000566472 MAPK8IP3Q9UPT6 1336 aa8.08□□□□□ -1.12
CLN3-223ENST00000566472 BCAR3O75815 825 aa8.08□□□□□ -1.12
CLN3-223ENST00000566472 TNNT2P45379 298 aaPredicted RBP8.08□□□□□ -1.12
CLN3-223ENST00000566472 RARSP54136 660 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms