RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 C1orf167Q5SNV9 1468 aa14.34□□□□□ -0.11
CLN3-220ENST00000566040 RALGAPBQ86X10 1494 aa14.34□□□□□ -0.11
CLN3-220ENST00000566040 TOM1O60784 492 aa14.34□□□□□ -0.11
CLN3-220ENST00000566040 PIP4K2BP78356 416 aa14.34□□□□□ -0.11
CLN3-220ENST00000566040 STAC3Q96MF2 364 aa14.34□□□□□ -0.11
CLN3-220ENST00000566040 C19orf44Q9H6X5 657 aa14.34□□□□□ -0.11
CLN3-220ENST00000566040 STK26Q9P289 416 aa14.34□□□□□ -0.11
CLN3-220ENST00000566040 HSPA1LP34931 641 aa14.33□□□□□ -0.12
CLN3-220ENST00000566040 NEUROD1Q13562 356 aa14.33□□□□□ -0.12
CLN3-220ENST00000566040 GPRASP1Q5JY77 1395 aa14.33□□□□□ -0.12
CLN3-220ENST00000566040 SHPRHQ149N8 1683 aa14.33□□□□□ -0.12
CLN3-220ENST00000566040 SIRT1Q96EB6 747 aa14.32□□□□□ -0.12
CLN3-220ENST00000566040 SLAIN2Q9P270 581 aa14.31□□□□□ -0.12
CLN3-220ENST00000566040 TULP4Q9NRJ4 1543 aa14.31□□□□□ -0.12
CLN3-220ENST00000566040 KIF1AQ12756 1690 aa14.3□□□□□ -0.12
CLN3-220ENST00000566040 MED1Q15648 1581 aaPredicted RBP14.3□□□□□ -0.12
CLN3-220ENST00000566040 TRPM3Q9HCF6 1732 aaPredicted RBP14.29□□□□□ -0.12
CLN3-220ENST00000566040 BRINP3Q76B58 766 aa14.29□□□□□ -0.12
CLN3-220ENST00000566040 ITSN1Q15811 1721 aa14.29□□□□□ -0.12
CLN3-220ENST00000566040 ATP7BP35670 1465 aa14.28□□□□□ -0.12
CLN3-220ENST00000566040 CADPS2Q86UW7 1296 aa14.28□□□□□ -0.12
CLN3-220ENST00000566040 PXDNQ92626 1479 aa14.28□□□□□ -0.12
CLN3-220ENST00000566040 PRAM1Q96QH2 718 aa14.28□□□□□ -0.12
CLN3-220ENST00000566040 TRAK1Q9UPV9 953 aa14.27□□□□□ -0.13
CLN3-220ENST00000566040 ABCA3Q99758 1704 aa14.27□□□□□ -0.13
CLN3-220ENST00000566040 CRYBG1Q9Y4K1 1723 aa14.27□□□□□ -0.13
CLN3-220ENST00000566040 SCAF1Q9H7N4 1312 aaKnown RBP14.26□□□□□ -0.13
CLN3-220ENST00000566040 COL22A1Q8NFW1 1626 aaPredicted RBP14.26□□□□□ -0.13
CLN3-220ENST00000566040 TONSLQ96HA7 1378 aa14.25□□□□□ -0.13
CLN3-220ENST00000566040 PRR36Q9H6K5 1346 aa14.25□□□□□ -0.13
CLN3-220ENST00000566040 CLSPNQ9HAW4 1339 aa14.25□□□□□ -0.13
CLN3-220ENST00000566040 C14orf37Q86TY3 774 aa14.25□□□□□ -0.13
CLN3-220ENST00000566040 ALS2Q96Q42 1657 aa14.24□□□□□ -0.13
CLN3-220ENST00000566040 LRP6O75581 1613 aa14.24□□□□□ -0.13
CLN3-220ENST00000566040 ATF3P18847 181 aa14.24□□□□□ -0.13
CLN3-220ENST00000566040 DDX17Q92841 729 aaKnown RBP14.24□□□□□ -0.13
CLN3-220ENST00000566040 ORAI2Q96SN7 254 aa14.24□□□□□ -0.13
CLN3-220ENST00000566040 SAFB2Q14151 953 aaKnown RBP eCLIP14.23□□□□□ -0.13
CLN3-220ENST00000566040 ANKARQ7Z5J8 1434 aa14.22□□□□□ -0.13
CLN3-220ENST00000566040 MARF1Q9Y4F3 1742 aaKnown RBP14.21□□□□□ -0.13
CLN3-220ENST00000566040 AKAP12Q02952 1782 aa14.21□□□□□ -0.13
CLN3-220ENST00000566040 ROCK2O75116 1388 aaKnown RBP14.21□□□□□ -0.14
CLN3-220ENST00000566040 MINK1Q8N4C8 1332 aaPredicted RBP14.2□□□□□ -0.14
CLN3-220ENST00000566040 HIRIP3Q9BW71 556 aaPredicted RBP14.2□□□□□ -0.14
CLN3-220ENST00000566040 SOS2Q07890 1332 aaPredicted RBP14.18□□□□□ -0.14
CLN3-220ENST00000566040 NRKQ7Z2Y5 1582 aa14.18□□□□□ -0.14
CLN3-220ENST00000566040 NUTM2FA1L443 756 aa14.18□□□□□ -0.14
CLN3-220ENST00000566040 SBNO2Q9Y2G9 1366 aa14.17□□□□□ -0.14
CLN3-220ENST00000566040 CENPJQ9HC77 1338 aaPredicted RBP14.16□□□□□ -0.14
CLN3-220ENST00000566040 MON2Q7Z3U7 1717 aa14.16□□□□□ -0.14
CLN3-220ENST00000566040 WASLO00401 505 aaPredicted RBP14.16□□□□□ -0.14
CLN3-220ENST00000566040 POGKQ9P215 609 aa14.16□□□□□ -0.14
CLN3-220ENST00000566040 PNPLA6Q8IY17 1366 aa14.16□□□□□ -0.14
CLN3-220ENST00000566040 MYOM1P52179 1685 aa14.16□□□□□ -0.14
CLN3-220ENST00000566040 JCADQ9P266 1359 aa14.14□□□□□ -0.15
CLN3-220ENST00000566040 PHRF1Q9P1Y6 1649 aaKnown RBP14.14□□□□□ -0.15
CLN3-220ENST00000566040 CCER1Q8TC90 406 aaPredicted RBP14.12□□□□□ -0.15
CLN3-220ENST00000566040 POLR3AO14802 1390 aaPredicted RBP14.11□□□□□ -0.15
CLN3-220ENST00000566040 PIK3C2AO00443 1686 aa14.11□□□□□ -0.15
CLN3-220ENST00000566040 ESCO1Q5FWF5 840 aa14.11□□□□□ -0.15
CLN3-220ENST00000566040 TESK2Q96S53 571 aa14.11□□□□□ -0.15
CLN3-220ENST00000566040 CDK19Q9BWU1 502 aa14.11□□□□□ -0.15
CLN3-220ENST00000566040 TIMELESSQ9UNS1 1208 aa14.11□□□□□ -0.15
CLN3-220ENST00000566040 CD163L1Q9NR16 1453 aa14.11□□□□□ -0.15
CLN3-220ENST00000566040 USP54Q70EL1 1684 aa14.1□□□□□ -0.15
CLN3-220ENST00000566040 FOXO3O43524 673 aa14.1□□□□□ -0.15
CLN3-220ENST00000566040 XPCQ01831 940 aaPredicted RBP14.1□□□□□ -0.15
CLN3-220ENST00000566040 PHF8Q9UPP1 1060 aa14.1□□□□□ -0.15
CLN3-220ENST00000566040 EIF3AQ14152 1382 aaKnown RBP14.09□□□□□ -0.15
CLN3-220ENST00000566040 TNS3Q68CZ2 1445 aa14.09□□□□□ -0.15
CLN3-220ENST00000566040 NUDT16Q96DE0 195 aaKnown RBP14.09□□□□□ -0.15
CLN3-220ENST00000566040 CARD11Q9BXL7 1154 aa14.09□□□□□ -0.15
CLN3-220ENST00000566040 RGS17Q9UGC6 210 aaPredicted RBP14.09□□□□□ -0.15
CLN3-220ENST00000566040 USP47Q96K76 1375 aa14.09□□□□□ -0.15
CLN3-220ENST00000566040 SSH2Q76I76 1423 aa14.08□□□□□ -0.15
CLN3-220ENST00000566040 PLCH1Q4KWH8 1693 aa14.08□□□□□ -0.16
CLN3-220ENST00000566040 NPHP3Q7Z494 1330 aa14.08□□□□□ -0.16
CLN3-220ENST00000566040 PPIP5K1Q6PFW1 1433 aa14.07□□□□□ -0.16
CLN3-220ENST00000566040 PMFBP1Q8TBY8 1022 aa14.07□□□□□ -0.16
CLN3-220ENST00000566040 CABP2Q9NPB3 220 aa14.07□□□□□ -0.16
CLN3-220ENST00000566040 SPATA31A3Q5VYP0 1347 aa14.07□□□□□ -0.16
CLN3-220ENST00000566040 SBNO1A3KN83 1393 aa14.07□□□□□ -0.16
CLN3-220ENST00000566040 DISP3Q9P2K9 1392 aa14.07□□□□□ -0.16
CLN3-220ENST00000566040 NRAPQ86VF7 1730 aa14.07□□□□□ -0.16
CLN3-220ENST00000566040 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.07□□□□□ -0.16
CLN3-220ENST00000566040 PLEKHG3A1L390 1219 aa14.05□□□□□ -0.16
CLN3-220ENST00000566040 SPATA31A6Q5VVP1 1343 aa14.05□□□□□ -0.16
CLN3-220ENST00000566040 CPSF1Q10570 1443 aaKnown RBP14.05□□□□□ -0.16
CLN3-220ENST00000566040 ST20-MTHFSA0A0A6YYL1 179 aa14.04□□□□□ -0.16
CLN3-220ENST00000566040 KRT28Q7Z3Y7 464 aa14.03□□□□□ -0.16
CLN3-220ENST00000566040 LRRC59Q96AG4 307 aaKnown RBP14.03□□□□□ -0.16
CLN3-220ENST00000566040 USP6P35125 1406 aa14.03□□□□□ -0.16
CLN3-220ENST00000566040 NWD2Q9ULI1 1742 aa14.02□□□□□ -0.16
CLN3-220ENST00000566040 ACEP12821 1306 aa14.02□□□□□ -0.17
CLN3-220ENST00000566040 CCDC61Q9Y6R9 512 aa14.02□□□□□ -0.17
CLN3-220ENST00000566040 LMO7Q8WWI1 1683 aa14.01□□□□□ -0.17
CLN3-220ENST00000566040 SLIT3O75094 1523 aa14.01□□□□□ -0.17
CLN3-220ENST00000566040 EVC2Q86UK5 1308 aa14.01□□□□□ -0.17
CLN3-220ENST00000566040 ILDR2Q71H61 639 aa14.01□□□□□ -0.17
CLN3-220ENST00000566040 COL18A1P39060 1754 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms