RNA–Protein interactions for RNA: ENST00000565393.2

TCF4-228, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 314 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-228ENST00000565393 ASXL1Q8IXJ9 1541 aa9.38□□□□□ -0.91
TCF4-228ENST00000565393 HRCP23327 699 aa9.38□□□□□ -0.91
TCF4-228ENST00000565393 SIRT1Q96EB6 747 aa9.38□□□□□ -0.91
TCF4-228ENST00000565393 SPATA31E1Q6ZUB1 1445 aa9.38□□□□□ -0.91
TCF4-228ENST00000565393 KIF1BO60333 1816 aa9.38□□□□□ -0.91
TCF4-228ENST00000565393 ABCC11Q96J66 1382 aa9.37□□□□□ -0.91
TCF4-228ENST00000565393 SOS2Q07890 1332 aaPredicted RBP9.37□□□□□ -0.91
TCF4-228ENST00000565393 NPHP3Q7Z494 1330 aa9.37□□□□□ -0.91
TCF4-228ENST00000565393 PLEKHG5O94827 1062 aa9.37□□□□□ -0.91
TCF4-228ENST00000565393 PRAM1Q96QH2 718 aa9.37□□□□□ -0.91
TCF4-228ENST00000565393 PTCH1Q13635 1447 aa9.37□□□□□ -0.91
TCF4-228ENST00000565393 PNPLA6Q8IY17 1366 aa9.37□□□□□ -0.91
TCF4-228ENST00000565393 LRP6O75581 1613 aa9.36□□□□□ -0.91
TCF4-228ENST00000565393 COL16A1Q07092 1604 aaPredicted RBP9.36□□□□□ -0.91
TCF4-228ENST00000565393 AHDC1Q5TGY3 1603 aaPredicted RBP9.36□□□□□ -0.91
TCF4-228ENST00000565393 PSME1Q06323 249 aa9.36□□□□□ -0.91
TCF4-228ENST00000565393 KRT28Q7Z3Y7 464 aa9.36□□□□□ -0.91
TCF4-228ENST00000565393 USP21Q9UK80 565 aa9.36□□□□□ -0.91
TCF4-228ENST00000565393 TRAK1Q9UPV9 953 aa9.36□□□□□ -0.91
TCF4-228ENST00000565393 XRN1Q8IZH2 1706 aaKnown RBP9.36□□□□□ -0.91
TCF4-228ENST00000565393 PLEKHH1Q9ULM0 1364 aa9.36□□□□□ -0.91
TCF4-228ENST00000565393 HAP1P54257 671 aaPredicted RBP9.35□□□□□ -0.91
TCF4-228ENST00000565393 RBM6P78332 1123 aaKnown RBP9.35□□□□□ -0.91
TCF4-228ENST00000565393 LMOD2Q6P5Q4 547 aa9.35□□□□□ -0.91
TCF4-228ENST00000565393 YTHDC2Q9H6S0 1430 aaKnown RBP9.34□□□□□ -0.91
TCF4-228ENST00000565393 STAC3Q96MF2 364 aa9.34□□□□□ -0.91
TCF4-228ENST00000565393 PHF8Q9UPP1 1060 aa9.34□□□□□ -0.91
TCF4-228ENST00000565393 PMFBP1Q8TBY8 1022 aa9.33□□□□□ -0.92
TCF4-228ENST00000565393 UPF1Q92900 1129 aaKnown RBP eCLIP9.33□□□□□ -0.92
TCF4-228ENST00000565393 HIRIP3Q9BW71 556 aaPredicted RBP9.33□□□□□ -0.92
TCF4-228ENST00000565393 MINK1Q8N4C8 1332 aaPredicted RBP9.32□□□□□ -0.92
TCF4-228ENST00000565393 PIK3C2GO75747 1445 aa9.32□□□□□ -0.92
TCF4-228ENST00000565393 TRPC5Q9UL62 973 aaPredicted RBP9.32□□□□□ -0.92
TCF4-228ENST00000565393 FNBP4Q8N3X1 1017 aaPredicted RBP9.31□□□□□ -0.92
TCF4-228ENST00000565393 TECPR2O15040 1411 aa9.31□□□□□ -0.92
TCF4-228ENST00000565393 PRAG1Q86YV5 1406 aa9.31□□□□□ -0.92
TCF4-228ENST00000565393 SPATA31A3Q5VYP0 1347 aa9.31□□□□□ -0.92
TCF4-228ENST00000565393 CABLES1Q8TDN4 633 aa9.3□□□□□ -0.92
TCF4-228ENST00000565393 PPLO60437 1756 aa9.29□□□□□ -0.92
TCF4-228ENST00000565393 NALCNQ8IZF0 1738 aa9.29□□□□□ -0.92
TCF4-228ENST00000565393 PAK3O75914 559 aaPredicted RBP9.29□□□□□ -0.92
TCF4-228ENST00000565393 NGDNQ8NEJ9 315 aaKnown RBP9.29□□□□□ -0.92
TCF4-228ENST00000565393 SHPRHQ149N8 1683 aa9.29□□□□□ -0.92
TCF4-228ENST00000565393 WASLO00401 505 aaPredicted RBP9.28□□□□□ -0.92
TCF4-228ENST00000565393 CCDC9Q9Y3X0 531 aaKnown RBP9.28□□□□□ -0.92
TCF4-228ENST00000565393 NEUROD1Q13562 356 aa9.27□□□□□ -0.93
TCF4-228ENST00000565393 UNC5CLQ8IV45 518 aa9.27□□□□□ -0.93
TCF4-228ENST00000565393 GJD4Q96KN9 370 aaPredicted RBP9.27□□□□□ -0.93
TCF4-228ENST00000565393 MYOM2P54296 1465 aa9.27□□□□□ -0.93
TCF4-228ENST00000565393 GPRASP1Q5JY77 1395 aa9.26□□□□□ -0.93
TCF4-228ENST00000565393 CDK19Q9BWU1 502 aa9.26□□□□□ -0.93
TCF4-228ENST00000565393 NHSL1Q5SYE7 1610 aa9.26□□□□□ -0.93
TCF4-228ENST00000565393 NRXN1Q9ULB1 1477 aa9.26□□□□□ -0.93
TCF4-228ENST00000565393 SETD1AO15047 1707 aaKnown RBP9.25□□□□□ -0.93
TCF4-228ENST00000565393 CDC42BPGQ6DT37 1551 aa9.25□□□□□ -0.93
TCF4-228ENST00000565393 FAM83GA6ND36 823 aa9.25□□□□□ -0.93
TCF4-228ENST00000565393 NBPF1Q3BBV0 1214 aa9.25□□□□□ -0.93
TCF4-228ENST00000565393 NUDT16Q96DE0 195 aaKnown RBP9.25□□□□□ -0.93
TCF4-228ENST00000565393 PXDNQ92626 1479 aa9.25□□□□□ -0.93
TCF4-228ENST00000565393 CDK12Q9NYV4 1490 aaPredicted RBP9.24□□□□□ -0.93
TCF4-228ENST00000565393 SIN3AQ96ST3 1273 aa9.24□□□□□ -0.93
TCF4-228ENST00000565393 A0A0G2JS52 829 aa9.23□□□□□ -0.93
TCF4-228ENST00000565393 MYT1Q01538 1121 aa9.23□□□□□ -0.93
TCF4-228ENST00000565393 L3MBTL2Q969R5 705 aa9.23□□□□□ -0.93
TCF4-228ENST00000565393 PRR36Q9H6K5 1346 aa9.23□□□□□ -0.93
TCF4-228ENST00000565393 SBNO1A3KN83 1393 aa9.23□□□□□ -0.93
TCF4-228ENST00000565393 ARHGEF10O15013 1369 aa9.23□□□□□ -0.93
TCF4-228ENST00000565393 EIF3AQ14152 1382 aaKnown RBP9.23□□□□□ -0.93
TCF4-228ENST00000565393 RGS12O14924 1447 aa9.22□□□□□ -0.93
TCF4-228ENST00000565393 BCL9LQ86UU0 1499 aa9.22□□□□□ -0.93
TCF4-228ENST00000565393 SRPK2P78362 688 aaKnown RBP9.22□□□□□ -0.93
TCF4-228ENST00000565393 NUTM2GQ5VZR2 741 aa9.22□□□□□ -0.93
TCF4-228ENST00000565393 SEPT12Q8IYM1 358 aa9.22□□□□□ -0.93
TCF4-228ENST00000565393 CCDC61Q9Y6R9 512 aa9.22□□□□□ -0.93
TCF4-228ENST00000565393 ATAD2Q6PL18 1390 aa9.22□□□□□ -0.93
TCF4-228ENST00000565393 ATRNO75882 1429 aa9.22□□□□□ -0.93
TCF4-228ENST00000565393 ANKARQ7Z5J8 1434 aa9.22□□□□□ -0.93
TCF4-228ENST00000565393 VPS72Q15906 364 aa9.21□□□□□ -0.94
TCF4-228ENST00000565393 NBPF8Q3BBV2 869 aa9.21□□□□□ -0.94
TCF4-228ENST00000565393 CCDC125Q86Z20 511 aa9.21□□□□□ -0.94
TCF4-228ENST00000565393 BTG4Q9NY30 223 aa9.21□□□□□ -0.94
TCF4-228ENST00000565393 TNS3Q68CZ2 1445 aa9.21□□□□□ -0.94
TCF4-228ENST00000565393 DLC1Q96QB1 1528 aa9.21□□□□□ -0.94
TCF4-228ENST00000565393 LAMC1P11047 1609 aa9.2□□□□□ -0.94
TCF4-228ENST00000565393 IFT172Q9UG01 1749 aa9.2□□□□□ -0.94
TCF4-228ENST00000565393 EVA1CP58658 441 aa9.2□□□□□ -0.94
TCF4-228ENST00000565393 ZC3H6P61129 1189 aaKnown RBP9.2□□□□□ -0.94
TCF4-228ENST00000565393 SF3B2Q13435 895 aaKnown RBP9.2□□□□□ -0.94
TCF4-228ENST00000565393 ABTB2Q8N961 1025 aa9.19□□□□□ -0.94
TCF4-228ENST00000565393 CABP2Q9NPB3 220 aa9.19□□□□□ -0.94
TCF4-228ENST00000565393 PRDM11Q9NQV5 511 aa9.19□□□□□ -0.94
TCF4-228ENST00000565393 ACEP12821 1306 aa9.19□□□□□ -0.94
TCF4-228ENST00000565393 ADGRB1O14514 1584 aa9.19□□□□□ -0.94
TCF4-228ENST00000565393 PLEKHG3A1L390 1219 aa9.18□□□□□ -0.94
TCF4-228ENST00000565393 ONECUT3O60422 494 aaPredicted RBP9.18□□□□□ -0.94
TCF4-228ENST00000565393 CHRNA2Q15822 529 aa9.18□□□□□ -0.94
TCF4-228ENST00000565393 FAM98CQ17RN3 349 aaKnown RBP9.18□□□□□ -0.94
TCF4-228ENST00000565393 CENPJQ9HC77 1338 aaPredicted RBP9.18□□□□□ -0.94
TCF4-228ENST00000565393 CABP1Q9NZU7 370 aa9.18□□□□□ -0.94
TCF4-228ENST00000565393 ZRANB1Q9UGI0 708 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms