RNA–Protein interactions for RNA: ENST00000564582.2

CHD9-210, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 3

Gene CHD9, Length 968 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-210ENST00000564582 TUSC1Q2TAM9 212 aa9.41□□□□□ -0.9
CHD9-210ENST00000564582 GOPCQ9HD26 462 aa9.41□□□□□ -0.9
CHD9-210ENST00000564582 SPDYE5A6NIY4 337 aa9.4□□□□□ -0.9
CHD9-210ENST00000564582 C6orf229H3BNL8 230 aa9.4□□□□□ -0.9
CHD9-210ENST00000564582 PRPF38BQ5VTL8 546 aaKnown RBP9.4□□□□□ -0.9
CHD9-210ENST00000564582 BRICD5Q6PL45 260 aa9.4□□□□□ -0.9
CHD9-210ENST00000564582 POLR3EQ9NVU0 708 aa9.4□□□□□ -0.9
CHD9-210ENST00000564582 TLL1O43897 1013 aa9.39□□□□□ -0.91
CHD9-210ENST00000564582 MTMR2Q13614 643 aa9.39□□□□□ -0.91
CHD9-210ENST00000564582 THAP11Q96EK4 314 aa9.39□□□□□ -0.91
CHD9-210ENST00000564582 PCMTD1Q96MG8 357 aaPredicted RBP9.39□□□□□ -0.91
CHD9-210ENST00000564582 ZBTB3Q9H5J0 574 aa9.39□□□□□ -0.91
CHD9-210ENST00000564582 CSPP1Q1MSJ5 1256 aa9.38□□□□□ -0.91
CHD9-210ENST00000564582 RNF19BQ6ZMZ0 732 aa9.38□□□□□ -0.91
CHD9-210ENST00000564582 USB1Q9BQ65 265 aaKnown RBP9.38□□□□□ -0.91
CHD9-210ENST00000564582 PCDHGC3Q9UN70 934 aa9.38□□□□□ -0.91
CHD9-210ENST00000564582 MSS51Q4VC12 460 aa9.37□□□□□ -0.91
CHD9-210ENST00000564582 RETREG3Q86VR2 466 aa9.37□□□□□ -0.91
CHD9-210ENST00000564582 SLC6A16Q9GZN6 736 aa9.37□□□□□ -0.91
CHD9-210ENST00000564582 LIMD1Q9UGP4 676 aa9.37□□□□□ -0.91
CHD9-210ENST00000564582 NUTM2BA6NNL0 878 aaPredicted RBP9.36□□□□□ -0.91
CHD9-210ENST00000564582 NUTM2EB1AL46 878 aaPredicted RBP9.36□□□□□ -0.91
CHD9-210ENST00000564582 NUTM2DQ5VT03 806 aaPredicted RBP9.36□□□□□ -0.91
CHD9-210ENST00000564582 NUTM2AQ8IVF1 878 aaPredicted RBP9.36□□□□□ -0.91
CHD9-210ENST00000564582 NKX2-3Q8TAU0 364 aa9.36□□□□□ -0.91
CHD9-210ENST00000564582 PCDHB15Q9Y5E8 787 aa9.36□□□□□ -0.91
CHD9-210ENST00000564582 A0A0G2JS52 829 aa9.34□□□□□ -0.91
CHD9-210ENST00000564582 MYT1Q01538 1121 aa9.34□□□□□ -0.91
CHD9-210ENST00000564582 SYMPKQ92797 1274 aaKnown RBP9.34□□□□□ -0.91
CHD9-210ENST00000564582 HRCP23327 699 aa9.33□□□□□ -0.92
CHD9-210ENST00000564582 LILRB3O75022 631 aa9.32□□□□□ -0.92
CHD9-210ENST00000564582 S1PR4O95977 384 aa9.32□□□□□ -0.92
CHD9-210ENST00000564582 TMEM132AQ24JP5 1023 aa9.32□□□□□ -0.92
CHD9-210ENST00000564582 PPP1R18Q6NYC8 613 aa9.32□□□□□ -0.92
CHD9-210ENST00000564582 FAM160A2Q8N612 972 aaPredicted RBP9.32□□□□□ -0.92
CHD9-210ENST00000564582 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.32□□□□□ -0.92
CHD9-210ENST00000564582 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.32□□□□□ -0.92
CHD9-210ENST00000564582 PROCA1Q8NCQ7 364 aaPredicted RBP9.31□□□□□ -0.92
CHD9-210ENST00000564582 PRR7Q8TB68 274 aa9.31□□□□□ -0.92
CHD9-210ENST00000564582 CABLES1Q8TDN4 633 aa9.31□□□□□ -0.92
CHD9-210ENST00000564582 JUNDP17535 347 aa9.3□□□□□ -0.92
CHD9-210ENST00000564582 QPCTQ16769 361 aa9.3□□□□□ -0.92
CHD9-210ENST00000564582 DESI1Q6ICB0 168 aa9.3□□□□□ -0.92
CHD9-210ENST00000564582 MMP16P51512 607 aa9.29□□□□□ -0.92
CHD9-210ENST00000564582 HELBQ8NG08 1087 aaPredicted RBP9.29□□□□□ -0.92
CHD9-210ENST00000564582 DXOO77932 396 aaKnown RBP9.28□□□□□ -0.92
CHD9-210ENST00000564582 PPP2R2DQ66LE6 453 aa9.28□□□□□ -0.92
CHD9-210ENST00000564582 ANKLE1Q8NAG6 615 aa9.28□□□□□ -0.92
CHD9-210ENST00000564582 TSC1Q92574 1164 aa9.28□□□□□ -0.92
CHD9-210ENST00000564582 PRDM9Q9NQV7 894 aa9.28□□□□□ -0.92
CHD9-210ENST00000564582 RNF223E7ERA6 249 aa9.27□□□□□ -0.93
CHD9-210ENST00000564582 CFAP99D6REC4 459 aa9.26□□□□□ -0.93
CHD9-210ENST00000564582 RTL5Q5HYW3 569 aaPredicted RBP9.26□□□□□ -0.93
CHD9-210ENST00000564582 FCF1Q9Y324 198 aaKnown RBP9.25□□□□□ -0.93
CHD9-210ENST00000564582 RFC5P40937 340 aa9.24□□□□□ -0.93
CHD9-210ENST00000564582 PTPRNQ16849 979 aa9.24□□□□□ -0.93
CHD9-210ENST00000564582 NUDT12Q9BQG2 462 aa9.24□□□□□ -0.93
CHD9-210ENST00000564582 PPEF1O14829 653 aaPredicted RBP9.23□□□□□ -0.93
CHD9-210ENST00000564582 RGS20O76081 388 aa9.23□□□□□ -0.93
CHD9-210ENST00000564582 TMEM259Q4ZIN3 620 aa9.23□□□□□ -0.93
CHD9-210ENST00000564582 CCDC24Q8N4L8 307 aa9.23□□□□□ -0.93
CHD9-210ENST00000564582 ZBTB24O43167 697 aaPredicted RBP9.22□□□□□ -0.93
CHD9-210ENST00000564582 CCNYL3P0C7X3 344 aa9.22□□□□□ -0.93
CHD9-210ENST00000564582 LYPD8Q6UX82 237 aa9.22□□□□□ -0.93
CHD9-210ENST00000564582 AP1G2O75843 785 aa9.21□□□□□ -0.94
CHD9-210ENST00000564582 CTHP32929 405 aa9.18□□□□□ -0.94
CHD9-210ENST00000564582 EVA1BQ9NVM1 165 aa9.18□□□□□ -0.94
CHD9-210ENST00000564582 V9GY48 417 aaPredicted RBP9.18□□□□□ -0.94
CHD9-210ENST00000564582 SLC19A1P41440 591 aa9.17□□□□□ -0.94
CHD9-210ENST00000564582 RPIAP49247 311 aa9.17□□□□□ -0.94
CHD9-210ENST00000564582 CTDSPL2Q05D32 466 aa9.17□□□□□ -0.94
CHD9-210ENST00000564582 FBXO31Q5XUX0 539 aaPredicted RBP9.17□□□□□ -0.94
CHD9-210ENST00000564582 BANK1Q8NDB2 785 aa9.17□□□□□ -0.94
CHD9-210ENST00000564582 PRKD2Q9BZL6 878 aa9.17□□□□□ -0.94
CHD9-210ENST00000564582 CD2BP2O95400 341 aaKnown RBP9.16□□□□□ -0.94
CHD9-210ENST00000564582 USP17L8P0C7I0 530 aa9.16□□□□□ -0.94
CHD9-210ENST00000564582 KCNH2Q12809 1159 aa9.16□□□□□ -0.94
CHD9-210ENST00000564582 APBB1O00213 710 aa9.15□□□□□ -0.94
CHD9-210ENST00000564582 PER1O15534 1290 aaPredicted RBP9.15□□□□□ -0.94
CHD9-210ENST00000564582 PLA2G2CQ5R387 149 aa9.14□□□□□ -0.95
CHD9-210ENST00000564582 PNMA1Q8ND90 353 aa9.14□□□□□ -0.95
CHD9-210ENST00000564582 ARMC2Q8NEN0 867 aa9.14□□□□□ -0.95
CHD9-210ENST00000564582 F12P00748 615 aaPredicted RBP9.13□□□□□ -0.95
CHD9-210ENST00000564582 UNC93B1Q9H1C4 597 aa9.13□□□□□ -0.95
CHD9-210ENST00000564582 TRIM32Q13049 653 aa9.12□□□□□ -0.95
CHD9-210ENST00000564582 LIAT1Q6ZQX7 453 aa9.12□□□□□ -0.95
CHD9-210ENST00000564582 LRRN4Q8WUT4 740 aa9.12□□□□□ -0.95
CHD9-210ENST00000564582 MAP10Q9P2G4 905 aa9.12□□□□□ -0.95
CHD9-210ENST00000564582 SOCS7O14512 581 aa9.11□□□□□ -0.95
CHD9-210ENST00000564582 SPRYD7Q5W111 196 aa9.11□□□□□ -0.95
CHD9-210ENST00000564582 PTCRAQ6ISU1 281 aaPredicted RBP9.1□□□□□ -0.95
CHD9-210ENST00000564582 ZNF598Q86UK7 904 aaKnown RBP9.1□□□□□ -0.95
CHD9-210ENST00000564582 ZNF697Q5TEC3 545 aa9.09□□□□□ -0.95
CHD9-210ENST00000564582 NBPF14Q5TI25 921 aa9.09□□□□□ -0.95
CHD9-210ENST00000564582 PRM3Q9NNZ6 103 aa9.09□□□□□ -0.95
CHD9-210ENST00000564582 WNT7BP56706 349 aa9.08□□□□□ -0.96
CHD9-210ENST00000564582 NR6A1Q15406 480 aa9.08□□□□□ -0.96
CHD9-210ENST00000564582 GPKOWQ92917 476 aaPredicted RBP eCLIP9.08□□□□□ -0.96
CHD9-210ENST00000564582 EMID1Q96A84 441 aaPredicted RBP9.08□□□□□ -0.96
CHD9-210ENST00000564582 FLIIQ13045 1269 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms