RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 ZNF697Q5TEC3 545 aa10.26□□□□□ -0.77
VPS35-204ENST00000563884 CHD1O14646 1710 aa10.25□□□□□ -0.77
VPS35-204ENST00000563884 MAP2K5Q13163 448 aa10.25□□□□□ -0.77
VPS35-204ENST00000563884 TRIM67Q6ZTA4 783 aa10.25□□□□□ -0.77
VPS35-204ENST00000563884 SLC27A5Q9Y2P5 690 aa10.25□□□□□ -0.77
VPS35-204ENST00000563884 FMNL1O95466 1100 aaPredicted RBP10.24□□□□□ -0.77
VPS35-204ENST00000563884 PLA2G2CQ5R387 149 aa10.24□□□□□ -0.77
VPS35-204ENST00000563884 GRIPAP1Q4V328 841 aa10.23□□□□□ -0.77
VPS35-204ENST00000563884 RSF1Q96T23 1441 aaPredicted RBP10.23□□□□□ -0.77
VPS35-204ENST00000563884 IRF6O14896 467 aa10.22□□□□□ -0.77
VPS35-204ENST00000563884 THAP11Q96EK4 314 aa10.22□□□□□ -0.77
VPS35-204ENST00000563884 PKDCCQ504Y2 493 aa10.21□□□□□ -0.77
VPS35-204ENST00000563884 TNFRSF10AO00220 468 aa10.2□□□□□ -0.78
VPS35-204ENST00000563884 PRR20EP86478 221 aa10.2□□□□□ -0.78
VPS35-204ENST00000563884 PRR20CP86479 221 aa10.2□□□□□ -0.78
VPS35-204ENST00000563884 PRR20DP86480 221 aa10.2□□□□□ -0.78
VPS35-204ENST00000563884 PRR20BP86481 221 aa10.2□□□□□ -0.78
VPS35-204ENST00000563884 PRR20AP86496 221 aa10.2□□□□□ -0.78
VPS35-204ENST00000563884 MDM2Q00987 491 aaPredicted RBP10.2□□□□□ -0.78
VPS35-204ENST00000563884 MINK1Q8N4C8 1332 aaPredicted RBP10.2□□□□□ -0.78
VPS35-204ENST00000563884 FANCD2Q9BXW9 1451 aa10.2□□□□□ -0.78
VPS35-204ENST00000563884 FCF1Q9Y324 198 aaKnown RBP10.2□□□□□ -0.78
VPS35-204ENST00000563884 FAM160A2Q8N612 972 aaPredicted RBP10.19□□□□□ -0.78
VPS35-204ENST00000563884 PRDM2Q13029 1718 aa10.19□□□□□ -0.78
VPS35-204ENST00000563884 CD46P15529 392 aa10.18□□□□□ -0.78
VPS35-204ENST00000563884 BRICD5Q6PL45 260 aa10.18□□□□□ -0.78
VPS35-204ENST00000563884 SALL2Q9Y467 1007 aaPredicted RBP10.18□□□□□ -0.78
VPS35-204ENST00000563884 GDF9O60383 454 aa10.17□□□□□ -0.78
VPS35-204ENST00000563884 DGAT1O75907 488 aa10.17□□□□□ -0.78
VPS35-204ENST00000563884 PRDM9Q9NQV7 894 aa10.17□□□□□ -0.78
VPS35-204ENST00000563884 FAM187AA6NFU0 413 aa10.16□□□□□ -0.78
VPS35-204ENST00000563884 FOXC1Q12948 553 aa10.16□□□□□ -0.78
VPS35-204ENST00000563884 ZNF787Q6DD87 383 aa10.16□□□□□ -0.78
VPS35-204ENST00000563884 RNF19BQ6ZMZ0 732 aa10.16□□□□□ -0.78
VPS35-204ENST00000563884 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS35-204ENST00000563884 CCDC102AQ96A19 550 aa10.16□□□□□ -0.78
VPS35-204ENST00000563884 KDM4AO75164 1064 aa10.15□□□□□ -0.78
VPS35-204ENST00000563884 CD2BP2O95400 341 aaKnown RBP10.15□□□□□ -0.78
VPS35-204ENST00000563884 RPIAP49247 311 aa10.15□□□□□ -0.78
VPS35-204ENST00000563884 Q3C1V9 767 aa10.15□□□□□ -0.78
VPS35-204ENST00000563884 EIF4G3O43432 1585 aaKnown RBP10.14□□□□□ -0.79
VPS35-204ENST00000563884 IFT140Q96RY7 1462 aa10.14□□□□□ -0.79
VPS35-204ENST00000563884 URB2Q14146 1524 aaKnown RBP10.13□□□□□ -0.79
VPS35-204ENST00000563884 MSS51Q4VC12 460 aa10.13□□□□□ -0.79
VPS35-204ENST00000563884 KRI1Q8N9T8 703 aaKnown RBP10.13□□□□□ -0.79
VPS35-204ENST00000563884 ZBTB24O43167 697 aaPredicted RBP10.12□□□□□ -0.79
VPS35-204ENST00000563884 MYT1Q01538 1121 aa10.12□□□□□ -0.79
VPS35-204ENST00000563884 CLCN1P35523 988 aa10.11□□□□□ -0.79
VPS35-204ENST00000563884 USP46P62068 366 aa10.11□□□□□ -0.79
VPS35-204ENST00000563884 GPCPD1Q9NPB8 672 aa10.11□□□□□ -0.79
VPS35-204ENST00000563884 PKD2L1Q9P0L9 805 aa10.11□□□□□ -0.79
VPS35-204ENST00000563884 LMOD2Q6P5Q4 547 aa10.1□□□□□ -0.79
VPS35-204ENST00000563884 HLA-CQ95604 372 aa10.09□□□□□ -0.79
VPS35-204ENST00000563884 USB1Q9BQ65 265 aaKnown RBP10.08□□□□□ -0.8
VPS35-204ENST00000563884 ZNF608Q9ULD9 1512 aaPredicted RBP10.07□□□□□ -0.8
VPS35-204ENST00000563884 HOXA2O43364 376 aa10.07□□□□□ -0.8
VPS35-204ENST00000563884 CYP4X1Q8N118 509 aa10.07□□□□□ -0.8
VPS35-204ENST00000563884 FAM217BQ9NTX9 383 aaPredicted RBP10.07□□□□□ -0.8
VPS35-204ENST00000563884 MMP16P51512 607 aa10.06□□□□□ -0.8
VPS35-204ENST00000563884 NUTM1Q86Y26 1132 aa10.06□□□□□ -0.8
VPS35-204ENST00000563884 ERCC6L2Q5T890 1561 aa10.05□□□□□ -0.8
VPS35-204ENST00000563884 CFTRP13569 1480 aa10.04□□□□□ -0.8
VPS35-204ENST00000563884 GUCA2AQ02747 115 aa10.04□□□□□ -0.8
VPS35-204ENST00000563884 CCDC24Q8N4L8 307 aa10.04□□□□□ -0.8
VPS35-204ENST00000563884 SYNJ1O43426 1573 aa10.04□□□□□ -0.8
VPS35-204ENST00000563884 ST8SIA5O15466 376 aa10.03□□□□□ -0.8
VPS35-204ENST00000563884 KIF13AQ9H1H9 1805 aa10.03□□□□□ -0.8
VPS35-204ENST00000563884 CLASP1Q7Z460 1538 aa10.02□□□□□ -0.8
VPS35-204ENST00000563884 MROH2BQ7Z745 1585 aa10.02□□□□□ -0.81
VPS35-204ENST00000563884 DXOO77932 396 aaKnown RBP10.02□□□□□ -0.81
VPS35-204ENST00000563884 TRIM32Q13049 653 aa10.02□□□□□ -0.81
VPS35-204ENST00000563884 TOR4AQ9NXH8 423 aa10.02□□□□□ -0.81
VPS35-204ENST00000563884 TTC24A2A3L6 582 aaPredicted RBP10.01□□□□□ -0.81
VPS35-204ENST00000563884 AAASQ9NRG9 546 aa10.01□□□□□ -0.81
VPS35-204ENST00000563884 SSTR3P32745 418 aaPredicted RBP10□□□□□ -0.81
VPS35-204ENST00000563884 TTLL12Q14166 644 aaPredicted RBP10□□□□□ -0.81
VPS35-204ENST00000563884 BARGINQ6ZT62 677 aa10□□□□□ -0.81
VPS35-204ENST00000563884 SYMPKQ92797 1274 aaKnown RBP10□□□□□ -0.81
VPS35-204ENST00000563884 REPIN1Q9BWE0 567 aaKnown RBP10□□□□□ -0.81
VPS35-204ENST00000563884 POTECB2RU33 542 aa9.99□□□□□ -0.81
VPS35-204ENST00000563884 ZNF775Q96BV0 537 aaPredicted RBP9.99□□□□□ -0.81
VPS35-204ENST00000563884 BCANQ96GW7 911 aa9.99□□□□□ -0.81
VPS35-204ENST00000563884 WNT7AO00755 349 aa9.98□□□□□ -0.81
VPS35-204ENST00000563884 ZMYND10O75800 440 aa9.98□□□□□ -0.81
VPS35-204ENST00000563884 ZC3H15Q8WU90 426 aaKnown RBP9.98□□□□□ -0.81
VPS35-204ENST00000563884 ABCC8Q09428 1581 aa9.97□□□□□ -0.81
VPS35-204ENST00000563884 FDX1P10109 184 aa9.97□□□□□ -0.81
VPS35-204ENST00000563884 JUNDP17535 347 aa9.97□□□□□ -0.81
VPS35-204ENST00000563884 C6orf229H3BNL8 230 aa9.96□□□□□ -0.82
VPS35-204ENST00000563884 AXIN1O15169 862 aa9.96□□□□□ -0.82
VPS35-204ENST00000563884 RETREG3Q86VR2 466 aa9.96□□□□□ -0.82
VPS35-204ENST00000563884 AVPP01185 164 aa9.95□□□□□ -0.82
VPS35-204ENST00000563884 SNIP1Q8TAD8 396 aaKnown RBP9.95□□□□□ -0.82
VPS35-204ENST00000563884 MRGPRX2Q96LB1 330 aa9.95□□□□□ -0.82
VPS35-204ENST00000563884 WDR97A6NE52 1622 aa9.95□□□□□ -0.82
VPS35-204ENST00000563884 WIZO95785 1651 aa9.94□□□□□ -0.82
VPS35-204ENST00000563884 TARBP1Q13395 1621 aaKnown RBP9.94□□□□□ -0.82
VPS35-204ENST00000563884 TOPBP1Q92547 1522 aa9.94□□□□□ -0.82
VPS35-204ENST00000563884 CRIPAKQ8N1N5 446 aa9.94□□□□□ -0.82
VPS35-204ENST00000563884 SPIRE2Q8WWL2 714 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms